TCONS_00000055 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000055
Unique NameTCONS_00000055
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000055 ID=TCONS_00000055|Name=TCONS_00000055|organism=Clytia hemisphaerica|type=transcript|length=2363bp
AGATGGCGTTTAAGTGCGCTAAACGCACTTAGGCGCAATTTTTTACATaa
gtgagtaccaagcttaaGGGAGCTCTTGATGTTTCTTTTTGTTATGTAcc
ctttttatttgtttttgaaattttattattcTAAACTTAACTTCTAAACT
TAGCGGGCTAAtcttttttcgttttctttactttactttactttacttta
AAAGCTACGAAGTGATGTAAAGGCTCTAGACGAACATTCATAATACATGA
AGTGTAGACATCTGGTACATGCTAAATATTATTTGACAATGATGCTGTAT
CTAACATTCAACCTACACGCTATCACGGTTTTACAGTTAATACTAACATT
TACTCACACGTTTGCATCAAACCAAACATATATGTGGCAATCGACAAACA
TCACCAGACAACAAACACATGTACAGTATATGCGATTCAAGAAATTAACT
CGTGGATATAAGGTATGGGCTACACTCGGTAGACATATCGATTGTAATTT
CAGTGGCTCCTCTAAAATGGAATGTGCTGATACTTGTATGAGAAAACCAA
TGTGTGTTACCTGGACATGGCGAGAACATTATGGGTTATGTCGCTGTTCT
GCCGAAGTATACCGTGTCTCTCCTACTTACATTTTACAGGATAACCAATT
TGATGCTTATGAAATTTGGAATCCCTGTATGCAGAATGCATTGTTATGTG
AACATGGAAGTATTTGCTCACCGAACCGCTTGACTAAAACATATCAATGT
CTCCATTGTTTCCCTCCATACACTGGCAAACATTGCAATGAAACTGgtCC
ATCGATACCCTCGACGATTTCGCAAGACATTTTACTTGGTAAAAACGCTT
CCTGTATTGCTTTGAAAGAACATTTCAATATACCAAACGGTTTGCAACAA
TACACAATACATCCATGGAGAGACCAACGAAAAATTCATATAAAATGTTC
AGgAAAAGTTATGAGATTTACCCGACTAGACACAAGAGACCAAGCTCCAG
TGAAGGAACTAAAAGCTGCGTCAATGGAAGATGGTCTTGTGCTTGAGAAT
AATTATCGTGCGCATGCGTCCTTTCTACGCATGGCTAAAATACTAATGAA
CTTTGAAACCATACGCATGAAATGTGTTCGAAACACAACAGAATTAGTTT
CACTGGGCAACAAAAGACAAGCTTCTGATGCCGATTTCAATGTTATACGA
TATTTCTCAGGAGAAAGTGATAGCCGACCTGTGGAGACGACAAGTATTTG
GAGATCCAGGCTGAATGGGGTGTGGGATGATTACCCAATTGATGCAGTCG
ACGACCTGTTATCTGCTGACAATGTTGAAAAAGAATATCGACCTTTCAAA
GATATTTATATAGGTAATGATGGTTTAAAAATGACATTCACAAATGAATC
ACAACAATGCTTTGGTCCTGAAGGCGATTTTAACCATTATTTACTCGAAG
TTTATTGATGAGAAATGGAAAcatatttctgacaaaaaaatGACCTTTCA
AAGATATTTATATAGGTAATGATGGTTTAAAAATGACAGTATNCGACAGA
ATAATGACCTTTCAAAGATATTTATATAGGTAATGATGatttaaaaatga
cattcaCCAATGAATCGCAACAATGTTTTGGTCCTGAAGGCGATTTTAAC
CATTATTTACTCGAAGTTTATTGATGAGAAATGGAAACATATTTCTGAAA
GAATATCGACCTTTCAAAGATATTTATATAGGTAATGATGGTTTAAAAAT
GACAGTATGATACTGGTCCGAACTTCCTATATCTGTAACCGAAAAATGAA
TCGATTTTAGACACCGAAGTTTTTGCTTTCGTTTAGGTACTCGGTATCGT
ACTTTTGTGAGGGAGATTAataccaatgaagtataagcccgaagggctag
aagagAATCTTTGACCtgtctcaggcaagaaaaagtgaagccttaaaatg
ggcgctgcatttttgacgacgggTTGAATGTAGCAGTCCTTTTGTTTTct
agtgatattttttttcgaaatttagtggtaaattttagtttcaatcagcc
acgtgtgtaaaaaccaggtggCTGGCGcaattttggtaggatttgttggc
ttcaaatcctaccaaggagattcacTTCTATTTCATTCAATTCATTGGTT
AATAATTTGGGCCATTAATGGATCTTTTTCGGAGGGGGGGTTATTATTTT
TAGCTGATCACTGAAATTATTCttcaatttaattatgttttcTAAGACTG
TACATTTTTGTTCTTacatttacaatttttcatctttggAAGAAACTGAG
CATAATTTTAGCCAAAACAACTAAGTAACTATTTTTCCAATTGAATTAAA
CTTCAATTAATTA
Run BLAST on NCBI

transcript from alignment at sc0000001:1156662..1170895+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000055 ID=TCONS_00000055|Name=TCONS_00000055|organism=Clytia hemisphaerica|type=transcript|length=14234bp|location=Sequence derived from alignment at sc0000001:1156662..1170895+ (Clytia hemisphaerica)
AGATGGCGTTTAAGTGCGCTAAACGCACTTAGGCGCAATTTTTTACATaa
gtgagtaccaagcttaaGGGAGCTCTTGATGTTTCTTTTTGTTATGTAcc
ctttttatttgtttttgaaattttattattcTAAACTTAACTTCTAAACT
TAGCGGGCTAAtcttttttcgttttctttactttactttactttacttta
AAAGCTACGAAGTGATGTAAAGGCTCTAGACGAACATTCATAATACATGA
AGTGTAGACATCTGGTACATGCTAAATATTATTTGACAATGATGCTGTAT
CTAACATTCAACCTACACGCTATCACGGTTTTACAGTTAATACTAACATT
TACTCACACGTTTGCATCAAACCAAACATATATGTGGCAATCGACAAACA
TCACCAGACAACAAACACATGTACAGTATATGCGATTCAAGAAATTAACT
CGTGGATATAAGGTATGGGCTACACTCGGTAGACATATCGATTGTAATTT
CAGTGGCTCCTCTAAAATGGAATGTGCTGATACTTGTATGAGAAAACCAA
TGTGTGTTACCTGGACATGGCGAGAACATTATGGGTTATGTCGCTGTTCT
GCCGAAGTATACCGTGTCTCTCCTACTTACATTTTACAGGATAACCAATT
TGATGCTTATGAAATTTGGGTAAGTTTATATTTATAATCTTTAAAGCAAA
TAATATATGCATTTAGAGGGTTTTATGACTTCGGGCTAACTCCAGTAATG
TCTCCCACCACACTACTCCTCCTCGCTGATTTTTGTTTTCGATTTCTGAC
CATGGAGACTTTCATTGATGTTTCTGAGTGACTTTAGTGATTTTgaacga
attttgaaattttcaacaatttGGACCCAGAAGGGGTTTGAACCTGCAAA
CAGAAAGTTTCCTTGTGCAGTAGTCCGATGCTCTACCGTTCGACTACAAG
ACCACTGTAGATAACGATAGTATAGTTTACTGATCCAATATATGGCAATA
GTTCAAACCCTACCAGAGAACTTAAAATGCCTCAAAAGTGTACTCTCGGG
AGCTCTAACCCTGATCCTAACTCATCAATAACCAACCCTAAACTTAActa
aaagaaatgaaataattttgggAGACATAATAGGATTTAGTCATGAATAA
ATTACTTTgggattgtaaaatttggcacATGATACCCTAGATAAGGTCGT
TTGTGAAATTCTGTCAATCAAGCGACCAAGTTTGCCCAGAACAAAGATGT
AAATATAAGGTAGACCAGGTCGATCTGGGGGGTCTGCGTCCCCCAAGagg
tgaaaaatatttgatggtgGTTTTGGGTTGCTAAGATGCTATATTTTCAG
GAATGAGTCGGTAAATAGGCTGTTAAGGGGGCTAACTAAAATGGTAAGCT
AGGTAAGTGGGGGTGTTTTTAGCCAAAATACCAATTTGTAAGGGATTTTG
CTTGACACTTGAAACACCATGGTAACTTAGAAGTGCGATTCTGCACTATC
TAAAAATCGTTATTGCTTGAAACTTTCCAAATATGTCACAAAtaggtaaa
ataaaattttgaaaaaagaaaaattcaaaaatatttaccaGGGGGTTCTG
TACCAAAGAAAACAGGGGGTAAAACACGAAAAAACNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTCCAAATATGTTACAAAtaggtaaaataaaattttga
aaaaagaaaaattcaaaaatatttaccaGGGGGTTCTGTACCAAAGAAAA
CAGGgggtaaaaaacgaaaaaaacccCCAAAATCGTATTTTTTCAGTAGA
AAAGTGGTCATAGGCAAACGAAAAACTGTTTATGATACTTCAAAGGTTAT
GTGGTGATAGATCGTGATTGCTCTCATCATAATATCAGGATTAACTATCC
ACTGGGGGCTTAATTCTttattttcagggggtaaaacttgcaaaaatact
cattttttgaccaaaattcaaatttttgagcTAATGTCTCGCGATTAACC
CCTCAAACAGTCTACAACTATGAAAATTCCCAATAAAAAGCCTTTAAACT
AATAAATTTATCTGTTTCTAGGttagaaagtttcaaaatatctcaaaatc
gGGGGTAAAATGtcttaaaatattaaatttttacaaaatatcacaatttt
ttaaaaattaaaatcaatttttggacaaaaaaacaaaatcataagTCATA
AccagttttcttgattttaggGCGAAAATTGCAAAAACACCTTCTTTTCG
ACAAAAACTGGTAGTCCATAAGACTTTCAAATCGGCTAAAAGTAACAGCT
TTCTATGAAAAATATACTGAGACAACGTAATAAAAAAGTTTATCATAATA
TCAATAGCTTTAGAATTATCCATAATAAACCAATCATAGCGATGTCAAAT
TAAACAACAACAAATCTTACACCTTCATATTATTTAGTTCTCGTCGTCAT
CCTCAGCTGATCTCTTCATCTTCGTCTTCATCCGATTCGTCGTCGGAAAT
TTCATCTTCTCCAACTTCAGCTTCTTCGCTGTTGTAGGTCGCATCACAAA
GTATCTCCTCAACTTTAAGGGGAAAGATTACCTCGTCAACCCAAATTGTA
GATCCGTCGTTCGACCAACCACTTTCTGTAATATCTCCTTGTTAACCAAC
TTATTAATGATGATTTCCAAAGTTTGCTAACGTAGTTTGCCTTCTTCGAG
TGGAGAATCAAAATTGACTGAGACGGAGGAAGCATGGCCATATCGataat
ttttctgcttttggtgtacttcttttcaaacatttttgctCTCGCTACGT
TGACTGATGTTTCTTTAGGATAACCATAAAGGGCGCAGACGAATCGTTCC
AAATAATTTTGAGTTTCTTCTTCCAAATTCCATGATTCTCCCAAGCGGCG
AAAAGCTTCCACGAAATTTctattcttcttcattttattGAAGCAGGTTG
ATTTTCCTTCTTTGAAGAATAATGATTATATGTAATCGTTTCCTGTAAAG
GCGTGGAAACCACTCAAAGATGTTTTGTACTTGACAGCATCTTTGCCAAG
GTTGCCTGTCCAAAACCCTTTCCGTGTCTTCCCTTTGCCGTAGTCAAGAT
AGATTTTGGTTGGACTTAGAAGACATGCTGCAAGAACAAAGATGTCAGTG
TCTGCAGATGGAGATCTTAAGATTACTTTCGCTTCGGGATTTTCTTTCAG
GACATGACTGCAGTGAGGGGTGACCTTTGAGTCAGCTTCCTCTTGATCAG
ATGACAAATTCTCTGAAATAGTGACACCCGTTCGACTAAGACAATACGTA
ACACCTTCTTGAGAAAAATAGACCTTCGAACAATTTGTGGTCTGCAATAC
TCTCTGATAATTACTTCTCATTACTTCTGACATCAGCTCAaccaattttg
ttttgttttcaacattCCTCATGAAGTCTCCGAAGTCATAGGGAAATATC
GATTCCTTGGATGCGATCATAACTTTTTGATCTTTACCACGCTCATTACG
TTCATCACCTTTGATCGAATTGGATCTGTATGTGTCAGCAACAATATCAA
TACGGTTGTACCATTTTGGCAGGTCTCCAATGAATTTCGTCATAGTCCAA
ATAGCAGCAATCAGGTCAATGACAAAGGACTTATCTTTCTTCTTGATAGA
CTTCAGTGAAACATCTGATCTAGGATCTTTCTAGTTGTCGTATCTGCAAC
CAGTAGTTTCATTAGCCTGCTTTTTGGTGTTTCACGTTTTTGGTGTTTTC
CATTTCCATGTGCAAGACTGAGAGGTGCAGGAGCCAATGGGTAGACAAGA
GCTGATGGAATATCAATTGCGCGTTCATTTCTAATTGAAAACGAAAGAAG
GGTACCAATGATATCCCGATTTACTTCTATTATtgtatttgcaaaatatt
gacatttaatgACTGATGTTGAATATGTCTTGAATATGTAGATAGGAACT
CGGCTCAATCTGTCTTTCTTTGGATTTCCTTTGACACTTGACTGCTCAAA
TTCGTCTCGCATTCTCTTCCCGTCttcttctattttcaaaatcttgcttG
CAAACGATTCCTCAACCATTTCCCCAGAGAAGAAAAGTTGTATAGCCCCT
CCAGACCTAAATCAAAAGGATTGATGTATTTCCCTTTCACCACCTGAAAA
ATTTTTGTCACATGCTTTTCACTGGCAAGAATCTTGGACGGTCTCATAGG
CTTGTATTTATCACATAATCTTAAAGTGCCAGCCATCTTTTTTAATTCAG
AGGTTGTTTTAGCTATGTCAGCTCGATTCAAACACCATTTTAGAACTGCG
TCCTTTTTGTTCGCAAAAAACTTGATTCCACCTGAAAATGACGAATTTTT
CTGTAGTAACCCTTCTATTTGATTTATCTCCAGTGATCAAACGCGAGGTA
AATACATATTGATTTTGATTGGGAAAGATTTCATATTGAACCTAATTCCC
TATTAATGTAATTATTTATCTGAGGTTTTAGCATCGCGGTTGATCGACTG
TTCTCCACGCTGATCTGTGGAAGGATAAGCTGATTGAGCTTGGACAGAAA
TTCCAGACATTTTGAAGGTCTCTGTCAAGCCAGGGTATCGCAGATCAATC
TCCttcattacacgtttttttttttatgaacgtcaaaaattttcgaagcc
ttcagatgttcttagttttttgaatttgaagcctaaaaatgttcttaaaa
tgttcttattttcagcattttttgagcattttgatgtaatttcttaagaa
aatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNtccaaagccttagaatgttcttagaatgttctta
aatttttgggcctcgaagccttatgttcttatatagtttgttcttataaa
aaaaaacgtgtatttggaCATACCACAAGACATATCTTGCATAGTTGGTT
TTGTTAAATGCAAAATAGAAAGGCAACATCTCATCCCACGCAAGGCAGCA
TCTCATCCCACGCTTGCAATCTCATCTCGAAGTTGTTTGTTTGGACGGCT
GTGTGAATCTTGTGCTGAATTCTCACGATGTTCAGGTGTACCATCCAAAA
CTAGGCTGTTTTGCCGACTTTCCAATCTCGAACATCTTGACCGTAGCGCT
CGTATCTTTGTAAGAATTCGTTCCAATTCGGAGGTATCATGCTGTCAAAG
CTCTCAGGGTCAGAACTGATGTCGTACAAACAATCGGGCACTTTCGGagc
tttttgaaataaaactcacGCAACCCACGCACTTAAACATGATAACTTAA
ACACGGCACTTTTCAGAGATTCTTTTAacaaaaatgttacaaaatttaCA
TTACAAACGTTTTGAATAACTGAAAACACTCTCTAGATTAGATTGAAAAT
CCAACGTAACACATTGTGTAATGAGATAAGGCTGATTATTGCTGATAATT
AGATATAAATTGGTCACAAAAGGTTTCTAGATCTATAAAGGTGTCATATT
TTTCTTTCGATTAAACTGACTACAACCAAATTTGAGCCTAATTGGTGTAA
TTCTGATTTGTGTGAACCGCACTGTCATTAAAGTCTCTTTGGTagtcttt
aattttgaaaaaaagtgatttttttgtaaagATCTAACATTTTTGGACAT
TTTACCCCGGATTTGaggtattttgaaattttctaactTAAAAACTGATA
AATTTATTAGTTTAAAGGCTTTTTATTGGGAATTTTAATAGTTTTAGACT
GTTTGAGGGGTTAATCGCGAGACATTAgctcaaaaatttgaattttggtc
aaaaaatgagtattttttgcaatttttaccccctgaaaataaAGAATTAA
GCCCCCAGTGGATAGTTAATCCTGATATTATGATGAGAGCAATCACGATC
TATCACCACATAACCTTTGAAGTATCATAAACAGTTTTTCGTTTGCGTAG
GACCACTTTTCTGCTGAAAAAATACGATTTTGGGGGTTTTTTTCGTGTTT
TACCCCCTGTTTTCTTTGGTACAGAACCCCCtggtaaatatttttgaatt
ttcttttttcaaaatgttattTTACCTATTTGTAACATATTTGGAAAGTT
TCAAGCAATAACGATTTTTAGATAGTGCAGAATCGCACTTCTAAGTTACC
ATGGTGTTTCAAGTCTCAAGCAAAATCCCTTACAAATTGGTATTTTGGCT
AAAAACACCCCCACTTACCTAGCTTACCATTTTAGTTAGCCCCCTTAACA
GCCTATTTACCGTCTCATTCCTGAAAATATAGCATCTTAGCAACCCAAAA
CCACCATCAAACATTTTTCACCTCTTGGGGGACGCAGACCCCCCAGATCG
ACCTGGTCTAAGGATAGAAAGTTAGATAGACATTTTACAAATTACGGcac
gttttgaaattattgccatgatgattaactcccagcggattttattacaa
ctacttattcttttcataaaaaaccaTTTAATGTCTCCAGGGATGtgatc
accatggtaattgtttgaatacgaggcaagtgatgttcgtgacgtaattt
atgaaaaggtctattatggaATTTTTTCGTTTCAGAATCCCTGTATGCAG
AATGCATTGTTATGTGAACATGGAAGTATTTGCTCACCGAACCGCTTGAC
TAAAACATATCAATGTCTCCATTGTTTCCCTCCATACACTGGCAAACATT
GCAATGAAACTGGTAATTATTATTATTGATATGCGTAAGCCAAGATTACG
TCGTTTTTCATATCGAAAACACTGGAATTTTACCCCTGagtgttacacgt
tttttttttaagaaaaacgaggttcagaatgcctaaaaactaagaaacat
gctgaggctgagaatgagaaaataaaattttttaattcgttttttaagAG
CTTTGCaaacaaaacaaatgttttttatttctttccatgaaaaataggct
gtcaatctaatcactgtagaaagaattcAACAAAGATGAAgggcaaatat
taccatattaatgtctagcagactgtattaATATACATATTTACTATTGA
CGAATTCCTCAGAAatctccaagtgtaattgaaattggtttctttcaaaa
aaatcttctacatgattcccaaatgtataacagtaattactaagtTATTT
ATTATGGTAATGTTACTttaatggaatcgaaataattGACCAAATCTTTT
TGTTACGATTCTTGACTCTTTTTAAAAGGCGttgatgacatttttaagtt
gtgttttcaatgacgcgaaaaaaataatatcaactttgaacttaatccaa
gatcttaaatggtcgtcatggttacttttctctgccttgattgcgcgctg
aatagaatccgGATGGTCGGCACCGGGCGATGTATGATTTCAGCCTGTGC
TTTCACAGTAAAGATTGGCTCCactcatttaccttgagtgccacCCCCCC
CTCCCCACGGTTTTATCCCGTGGAATCGAAAACTTCGGTTTCTCTGTGTA
AATTAATTACAATTTAAGATTTAACCAATGCTGGGCTACATATTACCAtc
tagtagggggaaatttgttcgtttttttgaggtcgctcgatttttttagt
caaagcacttgttatacatttttggaaagctaaggggtaggggaatcaaa
ataNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNtgctttgactaaaaaaatcgagcgattttacaaatt
tccccctactaatccTTCATTTTAAACATAAAACCTCAAAGGCCAGAAAT
TTGAAGTTATCTCTTGTGTAGACTGTAGCAATGCTGGTTTAATTTTCTTG
ATTATTTTGTCATTTCTTCTCCCTCTCTCTTTGAGGCGGCCGGTCGGGCA
AGGGACGCCAAACCGGGTTCTAGACTTTTCAACCTTTCCTTTTCTGCTAT
ACTTAACTATATGGTTAGACTTTGTGCCtatgttttaatttctttcttct
tgttaAGCTGACAGGTGACTCTAGAGTGGCAGGAGATGCTTAATCAAGCT
AGCGCACCTGATCTCAAACTTCGGTCTTCAGCTTATCACTTCCTTTTGTG
TCTTGTGCAttccttttgttttttactttttggacctaccccggtggggt
ggaggtcctataaattaacccatgttcgttagttagttagtacgttagtt
accaacttttctcgagattggctcatttaatttttctgattttttgcaca
aaggtgttactataaaccctcgaatgtgacggagcccgattttcgaaaaa
aaaaattttccggccggtagaaccggaaatgtcccgaaaaaagcggtttt
ttgagattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNaatagatatataaatcgaaatttaaaattatac
attacttccattaaattctaattattcgttttataaataggtaggtccat
taaagtattacttgttttatttctttcttcATTGGGTTTTTATTACAGAT
TGTCATGGTTAGTCGCTAGTTTGTATCTTCTTCAGTGTATATAACTTcac
tatatttctttttttaaggtCCATCGATACCCTCGACGATTTCGCAAGGT
AAGATAAAAAAGGGTGCGACAATTTCGTTGCTCCGAGGAAAATAGAGATC
TTTCAGGCTTTTGGTGGGTTGTTTAACgaaagaaaatattattattattc
tagACGTCTATTGGtaaattttgaactttgaaatctattttttttaaatg
caatGTAAAGATACATCCAGGTTTCCTTGTGAAAAGGGAAGGTCTTTGTG
GGGTTTTTATGCATGATCGTTGATCTTGAAAATGTTATCTTAAATCGTTT
TTGGTTGGTTTTATGTTCTATCCAcaacagggtgtccggaaaaaagtatc
gagctgaaacacaactatgagtaaaaataatttatgtgtatgttcacaaa
gttgtattttaaggcttggggacacgagaagttttttttcacgtttgtgc
aatgcaacatgcgggaacatgctccatcccaccaacacaagaaaaaagtg
cttgtcctatggtttctttttttgttcatgggacaaaaagtgagggaaat
acctaaaagacacgctgattttgtcccaaaAAGaagattcgaatcaattt
tgctccattgtcccagggacaagaaagaaagaaaaatggggttgAGACAC
GaaaaagcgtttcaggttggtgggatggtgtccccaagcctttaagtTCC
CCCTCCTTTTTTGAAGATGTATATTTTGTCCAACAAAGGATTTTTAAAAA
AGGTTATCGATTAATGCCTTTTAGAAAACAAACTTTTCTATATAATAAGG
CTGTGATTTCTCATATTTCGGCGTGGATCATCACAAACTTATCTCcacaa
taatattttcaaactcGATGCTTTTTTCCAGACAGCATGTACAATCTGGA
TAACGTTTTTTTACAAactctttattttcattgtttttaaaagtagaaaa
aaactttttcaaaagtcgTTTTTAAACTATTATCCAATTGACAGTGAGCT
GATTTCACAAAATTCGTTTACCAAATCAATCATCTATTTTTAAGACATTT
TACTTGGTAAAAACGCTTCCTGTATTGCTTTGAAAGAACATTTCAATATA
CCAAACGGTTTGCAACAATACACAATACATCCATGGAGAGACCAACGAAA
AATTCATATAAAATGTTCAGGTTCGGAAGATAATTACATTTACTTTGAAG
GAAGAATATTGTtccaatttttgtaaattttaggTAGACtcgctaatttt
ttttccaaagctATTTCGcgagattttattttatttcaagtaTCATTTCA
TCAGATAGATATGCAGTTCTTTAAGGAACTAAAAATttgattcgaattac
agagagtaatttcaGGAAAACTCGAATGATAAGAATTTGAATTAGAACGA
GTTGACTGTATGTCTACACTTTTCTGAAACTTTTAAACTAGctgatatat
tttctttttctttttaaaatcaggAAAAGTTATGAGATTTACCCGACTAG
ACACAAGAGACCAAGCTCCAGTGAAGGAACTAAAAGCTGCGTCAATGGAA
GATGGTCTTGTGCTTGAGAATAATTATCGTGCGCATGCGTCCTTTCTACG
CATGGCTAAAATACTAATGAACTTTGAAACCATACGCATGAAATGTGTTC
GAAACACAACAGAATTAGTTTCACTGGGCAACAAAAGACAAGCTTCTGAT
GCCGATTTCAATGTTATACGATATTTCTCAGGAGAAAGTGATAGCCGACC
TGTGGAGACGACAAGTATTTGGAGATCCAGGCTGAATGGGGTGTGGGATG
ATTACCCAATTGATGCAGTCGACGACCTGTTATCTGCTGACAATGTTGAA
AAAGAATATCGACCTTTCAAAGATATTTATATAGGTAATGATGGTTTAAA
AATGACATTCACAAATGAATCACAACAATGCTTTGGTCCTGAAGGCGATT
TTAACCATTATTTACTCGAAGTTTATTGATGAGAAATGGAAAcatatttc
tgacaaaaaaatGACCTTTCAAAGATATTTATATAGGTAATGATGGTTTA
AAAATGACAGTATNCGACAGAATAATGACCTTTCAAAGATATTTATATAG
GTAATGATGatttaaaaatgacattcaCCAATGAATCGCAACAATGTTTT
GGTCCTGAAGGCGATTTTAACCATTATTTACTCGAAGTTTATTGATGAGA
AATGGAAACATATTTCTGAAAGAATATCGACCTTTCAAAGATATTTATAT
AGGTAATGATGGTTTAAAAATGACAGTATGATACTGGTCCGAACTTCCTA
TATCTGTAACCGAAAAATGAATCGATTTTAGACACCGAAGTTTTTGCTTT
CGTTTAGGTACTCGGTATCGTACTTTTGTGAGGGAGATTAataccaatga
agtataagcccgaagggctagaagagAATCTTTGACCtgtctcaggcaag
aaaaagtgaagccttaaaatgggcgctgcatttttgacgacgggTTGAAT
GTAGCAGTCCTTTTGTTTTctagtgatattttttttcgaaatttagtggt
aaattttagtttcaatcagccacgtgtgtaaaaaccaggtggCTGGCGca
attttggtaggatttgttggcttcaaatcctaccaaggagattcacTTCT
ATTTCATTCAATTCATTGGTTAATAATTTGGGCCATTAATGGATCTTTTT
CGGAGGGGGGGTTATTATTTTTAGCTGATCACTGAAATTATTCttcaatt
taattatgttttcTAAGACTGTACATTTTTGTTCTTacatttacaatttt
tcatctttggAAGAAACTGAGCATAATTTTAGCCAAAACAACTAAGTAAC
TATTTTTCCAATTGAATTAAACTTCAATTAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000028XLOC_000028Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000055-exon-sc0000001-1491911889:1156662..1157330TCONS_00000055-exon-sc0000001-1491911889:1156662..1157330Clytia hemisphaericaexon
TCONS_00000055-exon-sc0000001-1510915933:1156662..1157330TCONS_00000055-exon-sc0000001-1510915933:1156662..1157330Clytia hemisphaericaexon
TCONS_00000055-exon-sc0000001-1575043694:1156662..1157330TCONS_00000055-exon-sc0000001-1575043694:1156662..1157330Clytia hemisphaericaexon
TCONS_00000055-exon-sc0000001-1491911889:1163397..1163523TCONS_00000055-exon-sc0000001-1491911889:1163397..1163523Clytia hemisphaericaexon
TCONS_00000055-exon-sc0000001-1510915933:1163397..1163523TCONS_00000055-exon-sc0000001-1510915933:1163397..1163523Clytia hemisphaericaexon
TCONS_00000055-exon-sc0000001-1575043694:1163397..1163523TCONS_00000055-exon-sc0000001-1575043694:1163397..1163523Clytia hemisphaericaexon
TCONS_00000055-exon-sc0000001-1491911889:1168030..1168059TCONS_00000055-exon-sc0000001-1491911889:1168030..1168059Clytia hemisphaericaexon
TCONS_00000055-exon-sc0000001-1510915933:1168030..1168059TCONS_00000055-exon-sc0000001-1510915933:1168030..1168059Clytia hemisphaericaexon
TCONS_00000055-exon-sc0000001-1575043694:1168030..1168059TCONS_00000055-exon-sc0000001-1575043694:1168030..1168059Clytia hemisphaericaexon
TCONS_00000055-exon-sc0000001-1491911889:1169056..1169181TCONS_00000055-exon-sc0000001-1491911889:1169056..1169181Clytia hemisphaericaexon
TCONS_00000055-exon-sc0000001-1510915933:1169056..1169181TCONS_00000055-exon-sc0000001-1510915933:1169056..1169181Clytia hemisphaericaexon
TCONS_00000055-exon-sc0000001-1575043694:1169056..1169181TCONS_00000055-exon-sc0000001-1575043694:1169056..1169181Clytia hemisphaericaexon
TCONS_00000055-exon-sc0000001-1491911889:1169485..1170895TCONS_00000055-exon-sc0000001-1491911889:1169485..1170895Clytia hemisphaericaexon
TCONS_00000055-exon-sc0000001-1510915933:1169485..1170895TCONS_00000055-exon-sc0000001-1510915933:1169485..1170895Clytia hemisphaericaexon
TCONS_00000055-exon-sc0000001-1575043694:1169485..1170895TCONS_00000055-exon-sc0000001-1575043694:1169485..1170895Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1156662..1170895 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.236884	0.791134	0	0.159993	0	0	0	0.256579	0.371937	0.837516	0	0	0	0	0	2.25308e-05	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top