TCONS_00000052 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000052
Unique NameTCONS_00000052
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000052 ID=TCONS_00000052|Name=TCONS_00000052|organism=Clytia hemisphaerica|type=transcript|length=2373bp
ACCACCAATCAACCCTCAAAACCCATTGgaggaaaacaaaatcaaattca
TGCAACCTGACAAAAGGCTTTCGTTGCCCGACAATTTATTCGTCTCCACT
CACCAAGGTGATAAAAAGAACCGACGACATTCCGACGACATTCGATCAGT
TGTCGAACTATTTTCCATACGTCGAAACACCATGTGTAGCCTGAATTCCG
TCATCTCGAACGAGCTACGAAGTGATGTAAAGGCTCTAGACGAACATTCA
TAATACATGAAGTGTAGACATCTGGTACATGCTAAATATTATTTGACAAT
GATGCTGTATCTAACATTCAACCTACACGCTATCACGGTTTTACAGTTAA
TACTAACATTTACTCACACGTTTGCATCAAACCAAACATATATGTGGCAA
TCGACAAACATCACCAGACAACAAACACATGTACAGTATATGCGATTCAA
GAAATTAACTCGTGGATATAAGGTATGGGCTACACTCGGTAGACATATCG
ATTGTAATTTCAGTGGCTCCTCTAAAATGGAATGTGCTGATACTTGTATG
AGAAAACCAATGTGTGTTACCTGGACATGGCGAGAACATTATGGGTTATG
TCGCTGTTCTGCCGAAGTATACCGTGTCTCTCCTACTTACATTTTACAGG
ATAACCAATTTGATGCTTATGAAATTTGGAATCCCTGTATGCAGAATGCA
TTGTTATGTGAACATGGAAGTATTTGCTCACCGAACCGCTTGACTAAAAC
ATATCAATGTCTCCATTGTTTCCCTCCATACACTGGCAAACATTGCAATG
AAACTGgtCCATCGATACCCTCGACGATTTCGCAAGACATTTTACTTGGT
AAAAACGCTTCCTGTATTGCTTTGAAAGAACATTTCAATATACCAAACGG
TTTGCAACAATACACAATACATCCATGGAGAGACCAACGAAAAATTCATA
TAAAATGTTCAGgAAAAGTTATGAGATTTACCCGACTAGACACAAGAGAC
CAAGCTCCAGTGAAGGAACTAAAAGCTGCGTCAATGGAAGATGGTCTTGT
GCTTGAGAATAATTATCGTGCGCATGCGTCCTTTCTACGCATGGCTAAAA
TACTAATGAACTTTGAAACCATACGCATGAAATGTGTTCGAAACACAACA
GAATTAGTTTCACTGGGCAACAAAAGACAAGCTTCTGATGCCGATTTCAA
TGTTATACGATATTTCTCAGGAGAAAGTGATAGCCGACCTGTGGAGACGA
CAAGTATTTGGAGATCCAGGCTGAATGGGGTGTGGGATGATTACCCAATT
GATGCAGTCGACGACCTGTTATCTGCTGACAATGTTGAAAAAGAATATCG
ACCTTTCAAAGATATTTATATAGGTAATGATGGTTTAAAAATGACATTCA
CAAATGAATCACAACAATGCTTTGGTCCTGAAGGCGATTTTAACCATTAT
TTACTCGAAGTTTATTGATGAGAAATGGAAAcatatttctgacaaaaaaa
tGACCTTTCAAAGATATTTATATAGGTAATGATGGTTTAAAAATGACAGT
ATNCGACAGAATAATGACCTTTCAAAGATATTTATATAGGTAATGATGat
ttaaaaatgacattcaCCAATGAATCGCAACAATGTTTTGGTCCTGAAGG
CGATTTTAACCATTATTTACTCGAAGTTTATTGATGAGAAATGGAAACAT
ATTTCTGAAAGAATATCGACCTTTCAAAGATATTTATATAGGTAATGATG
GTTTAAAAATGACAGTATGATACTGGTCCGAACTTCCTATATCTGTAACC
GAAAAATGAATCGATTTTAGACACCGAAGTTTTTGCTTTCGTTTAGGTAC
TCGGTATCGTACTTTTGTGAGGGAGATTAataccaatgaagtataagccc
gaagggctagaagagAATCTTTGACCtgtctcaggcaagaaaaagtgaag
ccttaaaatgggcgctgcatttttgacgacgggTTGAATGTAGCAGTCCT
TTTGTTTTctagtgatattttttttcgaaatttagtggtaaattttagtt
tcaatcagccacgtgtgtaaaaaccaggtggCTGGCGcaattttggtagg
atttgttggcttcaaatcctaccaaggagattcacTTCTATTTCATTCAA
TTCATTGGTTAATAATTTGGGCCATTAATGGATCTTTTTCGGAGGGGGGG
TTATTATTTTTAGCTGATCACTGAAATTATTCttcaatttaattatgttt
tcTAAGACTGTACATTTTTGTTCTTacatttacaatttttcatctttggA
AGAAACTGAGCATAATTTTAGCCAAAACAACTAAGTAACTATTTTTCCAA
TTGAATTAAACTTCAATTAATTA
Run BLAST on NCBI

transcript from alignment at sc0000001:1153534..1170895+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000052 ID=TCONS_00000052|Name=TCONS_00000052|organism=Clytia hemisphaerica|type=transcript|length=17362bp|location=Sequence derived from alignment at sc0000001:1153534..1170895+ (Clytia hemisphaerica)
ACCACCAATCAACCCTCAAAACCCATTGgaggaaaacaaaatcaaattca
TGCAACCTGACAAAAGGCTTTCGTTGCCCGACAATTTATTCGTCTCCACT
CACCAAGGTGATAAAAAGAACCGACGACATTCCGACGACATTCGATCAGT
TGTCGAACTATTTTCCATACGTCGAAACACCATGTGTAGCCTGAATTCCG
TCATCTCGAACGAGGTCAGTCTAAAGCCAGTTCATTCTATACAATCTTTT
GGGCATCTGTCGATCGCTCATAATATACCCTCAAACAGAGGCGCTCCCAC
AAATCTAACAGTCATTCAAGTCTATCAAAACCCGACAAATACCGACGAAC
TACAACGTCAGTTTCTAAATAAACCACAAACGACGAATTTGACGAGTGAC
GAAATTCGGCATATACGAGACAGGCTTTATACACCACTGACAACTGCACA
CAAAGATAGCATAATAGCGGACTGTTTACCGTACAACCGGACGGACTTAG
AGCCGGACTTAATCTCAAGTGCAGTTGAATTGAGACAAAGTGTTAGAAAT
CATGAATTTTATAACTCGATTGAATTGATTGAGTCATTAAGTATCCATAG
TACGAAAATTTGAGATAGTGCACCCCTGTATAGAATTGTAATATGAAGAT
ATCTAATCCACAGATCCAGAACTATACTCCGAACTTACTCAATAGATTAA
CAATTTCGCTACAGAGGACCTGGTCAATGCAGTAGCTTCAGGCGGGGGAG
GGGGTATTTAACTCCCTTTTTAGAAAGTGATCTGTTTCTAAAACTGACTA
TTTTCGTTTCTCTTTATCTGAACAAATTCTTTGAGTTTTTAGTTCTAAGG
GAAGAAATATTTGCGCAAATTAATTTTGCGGCTCACAGCTTTAAATTTGG
AAGTCTCGGTCAGTTTCATTTTGCGGTTGAGAGagctttttgtttataaa
atggCCTATCTTGCCATTAATAGACCATTTTAGAGGTGTTTTTTTAAATC
CTGTGAATATTTGTGTTTCgctgaatttaatttcgtggatttgtcaaaaa
agtgcgaaattaaattctgcgaaaatttATTCCCGCGAAAATGCTTCACG
CGGTACAATACCGAATCTCGGGAAGTTAGATCTCAATGAGTTGGTTGGCA
ATGGTCAATTCgcttaccctgagtatcagaggttaagttttcaaagaata
tattaacctcggaagaccaataataggaattttatcgcgcatgtgtcaat
ctaatcactgtagaaagaatcaaagatgaagagcaaatattaccttatta
atgtctagcagactgtatcagtatgcagtttactatttatatgaattccc
cagaaacctccaggtgtaatcgaagtgagtttctttcaaaataaatcttt
tacatgatccccaaatgtataacagtaattactaagctattgattatgga
aatgtcacttttaattgaatcgaaataatagacagactttatgttatgat
tctctatcactgactctttttaaaaagcattgatgatattttttgttgta
ttttcaacgacaggaataaaaatatcaactttgaacttcatccaagatct
taaatggtcgtcatggttacttttgtcttcgttgattgcgcgatgaatct
ctattcgtcggcacagcgtcaatatatgattttgacctgtgcttttcatg
GTACAATTCGCTACTTGTTAAAATGAATCGgcataatattttttgaatca
atattatttctatgttttttttttccttttccgTGGAGACATCCTGTATC
TTTTTCATTGGGCCACCCCCACAGTCAAAAATTGAACCTCCTTGACAATT
CATTCAGTGTTACTATGTCactttcaacacaaaatcaaaatagtTCAATA
TTGAAAGGTTGAATCAAAATTATACAATAAAGTTTCACAATCATATGTTT
TAAGTTGAATCGATGAAACTACATTTCACATGAAATTATTTTCAGTCATC
TTCATCAATAttattcttatttaaaacaaaatcaacttatTTTTTCGATC
ACTGACAGGTTCAATTGGGAATGAATGTAAACTAACCTCGTTTCGTTAAC
GTACGTTTTTAGCGTGTTTTTAATTCGTGAATTAAATAATGGTTTTCTGC
TCGTCAAATATATTCATGaatgaaatattatttaaatgttttgtttttac
ataagtgttcccgtttcatatcagacacatatttcatatcgggacagCGT
CTTCCTTCCTTTTGTTATGTTATGCTggtataagcaaaaaatattttttt
cctctttcagACCAATCTTGCTCCTCATTTGTGTCAATCCAATTCGAAAA
AGCTTAGTTAAAATTGATCAGTAAGCAAACGGTATCACTCTAAACAAGac
ctttaaagtaaaaaaataagaaagagTTGAAAGCGAAGattcaaaatgaa
gaagacaaTTACAATTAGTGAAGTTCAAATCatagtttatttttttgttt
cttcttcatcattcatctttgtttttcagGTCTTTGATATTAACACTCCA
CTCACAAATTTCCTTTCAACCAATTCATTCtcatttgaattctttttgat
atcatttaaaaaaaaacaataaatgaACGTCAAACGTcatcactttgaaa
aaaattctcaaaaataatgacgtctaaaaacgctgttttctgctgttttt
tggggtcaatcacttgttagctttgtatcataactttatattgagtaaat
attttagtgaaatttcttcacagtgacgACCTCTtaaatcaaagaatctc
tccagtgaaaatgaaagttatggcgcttctctaaaagatcttcatttttt
tcttcttcattttcatcttcgttttcagaatttttttaaaaactttttta
tttcaaattgttccactcacaaatatctctccaacgataccaaatttata
aagattgaagaattccttcaaaagttataggtaaaagaaaaaagagtgca
cacttatcgtgaatagactttaattacTTCCAAACTattcaattcttttg
aaatttgaatattgcatctaagtgcacCTAGCTCCTTTTTCCATATCTTT
CATTCAAATCACTTTGTAGTGAGTACATAGATGGCGTTTAAGTGCGCTAA
ACGCACTTAGGCGCAATTTTTTACATaagtgagtaccaagcttaaGGGAG
CTCTTGATGTTTCTTTTTGTTATGTAccctttttatttgtttttgaaatt
ttattattcTAAACTTAACTTCTAAACTTAGCGGGCTAAtcttttttcgt
tttctttactttactttactttactttaAAAGCTACGAAGTGATGTAAAG
GCTCTAGACGAACATTCATAATACATGAAGTGTAGACATCTGGTACATGC
TAAATATTATTTGACAATGATGCTGTATCTAACATTCAACCTACACGCTA
TCACGGTTTTACAGTTAATACTAACATTTACTCACACGTTTGCATCAAAC
CAAACATATATGTGGCAATCGACAAACATCACCAGACAACAAACACATGT
ACAGTATATGCGATTCAAGAAATTAACTCGTGGATATAAGGTATGGGCTA
CACTCGGTAGACATATCGATTGTAATTTCAGTGGCTCCTCTAAAATGGAA
TGTGCTGATACTTGTATGAGAAAACCAATGTGTGTTACCTGGACATGGCG
AGAACATTATGGGTTATGTCGCTGTTCTGCCGAAGTATACCGTGTCTCTC
CTACTTACATTTTACAGGATAACCAATTTGATGCTTATGAAATTTGGGTA
AGTTTATATTTATAATCTTTAAAGCAAATAATATATGCATTTAGAGGGTT
TTATGACTTCGGGCTAACTCCAGTAATGTCTCCCACCACACTACTCCTCC
TCGCTGATTTTTGTTTTCGATTTCTGACCATGGAGACTTTCATTGATGTT
TCTGAGTGACTTTAGTGATTTTgaacgaattttgaaattttcaacaattt
GGACCCAGAAGGGGTTTGAACCTGCAAACAGAAAGTTTCCTTGTGCAGTA
GTCCGATGCTCTACCGTTCGACTACAAGACCACTGTAGATAACGATAGTA
TAGTTTACTGATCCAATATATGGCAATAGTTCAAACCCTACCAGAGAACT
TAAAATGCCTCAAAAGTGTACTCTCGGGAGCTCTAACCCTGATCCTAACT
CATCAATAACCAACCCTAAACTTAActaaaagaaatgaaataattttggg
AGACATAATAGGATTTAGTCATGAATAAATTACTTTgggattgtaaaatt
tggcacATGATACCCTAGATAAGGTCGTTTGTGAAATTCTGTCAATCAAG
CGACCAAGTTTGCCCAGAACAAAGATGTAAATATAAGGTAGACCAGGTCG
ATCTGGGGGGTCTGCGTCCCCCAAGaggtgaaaaatatttgatggtgGTT
TTGGGTTGCTAAGATGCTATATTTTCAGGAATGAGTCGGTAAATAGGCTG
TTAAGGGGGCTAACTAAAATGGTAAGCTAGGTAAGTGGGGGTGTTTTTAG
CCAAAATACCAATTTGTAAGGGATTTTGCTTGACACTTGAAACACCATGG
TAACTTAGAAGTGCGATTCTGCACTATCTAAAAATCGTTATTGCTTGAAA
CTTTCCAAATATGTCACAAAtaggtaaaataaaattttgaaaaaagaaaa
attcaaaaatatttaccaGGGGGTTCTGTACCAAAGAAAACAGGGGGTAA
AACACGAAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCAAATAT
GTTACAAAtaggtaaaataaaattttgaaaaaagaaaaattcaaaaatat
ttaccaGGGGGTTCTGTACCAAAGAAAACAGGgggtaaaaaacgaaaaaa
acccCCAAAATCGTATTTTTTCAGTAGAAAAGTGGTCATAGGCAAACGAA
AAACTGTTTATGATACTTCAAAGGTTATGTGGTGATAGATCGTGATTGCT
CTCATCATAATATCAGGATTAACTATCCACTGGGGGCTTAATTCTttatt
ttcagggggtaaaacttgcaaaaatactcattttttgaccaaaattcaaa
tttttgagcTAATGTCTCGCGATTAACCCCTCAAACAGTCTACAACTATG
AAAATTCCCAATAAAAAGCCTTTAAACTAATAAATTTATCTGTTTCTAGG
ttagaaagtttcaaaatatctcaaaatcgGGGGTAAAATGtcttaaaata
ttaaatttttacaaaatatcacaattttttaaaaattaaaatcaattttt
ggacaaaaaaacaaaatcataagTCATAAccagttttcttgattttaggG
CGAAAATTGCAAAAACACCTTCTTTTCGACAAAAACTGGTAGTCCATAAG
ACTTTCAAATCGGCTAAAAGTAACAGCTTTCTATGAAAAATATACTGAGA
CAACGTAATAAAAAAGTTTATCATAATATCAATAGCTTTAGAATTATCCA
TAATAAACCAATCATAGCGATGTCAAATTAAACAACAACAAATCTTACAC
CTTCATATTATTTAGTTCTCGTCGTCATCCTCAGCTGATCTCTTCATCTT
CGTCTTCATCCGATTCGTCGTCGGAAATTTCATCTTCTCCAACTTCAGCT
TCTTCGCTGTTGTAGGTCGCATCACAAAGTATCTCCTCAACTTTAAGGGG
AAAGATTACCTCGTCAACCCAAATTGTAGATCCGTCGTTCGACCAACCAC
TTTCTGTAATATCTCCTTGTTAACCAACTTATTAATGATGATTTCCAAAG
TTTGCTAACGTAGTTTGCCTTCTTCGAGTGGAGAATCAAAATTGACTGAG
ACGGAGGAAGCATGGCCATATCGataatttttctgcttttggtgtacttc
ttttcaaacatttttgctCTCGCTACGTTGACTGATGTTTCTTTAGGATA
ACCATAAAGGGCGCAGACGAATCGTTCCAAATAATTTTGAGTTTCTTCTT
CCAAATTCCATGATTCTCCCAAGCGGCGAAAAGCTTCCACGAAATTTcta
ttcttcttcattttattGAAGCAGGTTGATTTTCCTTCTTTGAAGAATAA
TGATTATATGTAATCGTTTCCTGTAAAGGCGTGGAAACCACTCAAAGATG
TTTTGTACTTGACAGCATCTTTGCCAAGGTTGCCTGTCCAAAACCCTTTC
CGTGTCTTCCCTTTGCCGTAGTCAAGATAGATTTTGGTTGGACTTAGAAG
ACATGCTGCAAGAACAAAGATGTCAGTGTCTGCAGATGGAGATCTTAAGA
TTACTTTCGCTTCGGGATTTTCTTTCAGGACATGACTGCAGTGAGGGGTG
ACCTTTGAGTCAGCTTCCTCTTGATCAGATGACAAATTCTCTGAAATAGT
GACACCCGTTCGACTAAGACAATACGTAACACCTTCTTGAGAAAAATAGA
CCTTCGAACAATTTGTGGTCTGCAATACTCTCTGATAATTACTTCTCATT
ACTTCTGACATCAGCTCAaccaattttgttttgttttcaacattCCTCAT
GAAGTCTCCGAAGTCATAGGGAAATATCGATTCCTTGGATGCGATCATAA
CTTTTTGATCTTTACCACGCTCATTACGTTCATCACCTTTGATCGAATTG
GATCTGTATGTGTCAGCAACAATATCAATACGGTTGTACCATTTTGGCAG
GTCTCCAATGAATTTCGTCATAGTCCAAATAGCAGCAATCAGGTCAATGA
CAAAGGACTTATCTTTCTTCTTGATAGACTTCAGTGAAACATCTGATCTA
GGATCTTTCTAGTTGTCGTATCTGCAACCAGTAGTTTCATTAGCCTGCTT
TTTGGTGTTTCACGTTTTTGGTGTTTTCCATTTCCATGTGCAAGACTGAG
AGGTGCAGGAGCCAATGGGTAGACAAGAGCTGATGGAATATCAATTGCGC
GTTCATTTCTAATTGAAAACGAAAGAAGGGTACCAATGATATCCCGATTT
ACTTCTATTATtgtatttgcaaaatattgacatttaatgACTGATGTTGA
ATATGTCTTGAATATGTAGATAGGAACTCGGCTCAATCTGTCTTTCTTTG
GATTTCCTTTGACACTTGACTGCTCAAATTCGTCTCGCATTCTCTTCCCG
TCttcttctattttcaaaatcttgcttGCAAACGATTCCTCAACCATTTC
CCCAGAGAAGAAAAGTTGTATAGCCCCTCCAGACCTAAATCAAAAGGATT
GATGTATTTCCCTTTCACCACCTGAAAAATTTTTGTCACATGCTTTTCAC
TGGCAAGAATCTTGGACGGTCTCATAGGCTTGTATTTATCACATAATCTT
AAAGTGCCAGCCATCTTTTTTAATTCAGAGGTTGTTTTAGCTATGTCAGC
TCGATTCAAACACCATTTTAGAACTGCGTCCTTTTTGTTCGCAAAAAACT
TGATTCCACCTGAAAATGACGAATTTTTCTGTAGTAACCCTTCTATTTGA
TTTATCTCCAGTGATCAAACGCGAGGTAAATACATATTGATTTTGATTGG
GAAAGATTTCATATTGAACCTAATTCCCTATTAATGTAATTATTTATCTG
AGGTTTTAGCATCGCGGTTGATCGACTGTTCTCCACGCTGATCTGTGGAA
GGATAAGCTGATTGAGCTTGGACAGAAATTCCAGACATTTTGAAGGTCTC
TGTCAAGCCAGGGTATCGCAGATCAATCTCCttcattacacgtttttttt
tttatgaacgtcaaaaattttcgaagccttcagatgttcttagttttttg
aatttgaagcctaaaaatgttcttaaaatgttcttattttcagcattttt
tgagcattttgatgtaatttcttaagaaaatgNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtccaaa
gccttagaatgttcttagaatgttcttaaatttttgggcctcgaagcctt
atgttcttatatagtttgttcttataaaaaaaaacgtgtatttggaCATA
CCACAAGACATATCTTGCATAGTTGGTTTTGTTAAATGCAAAATAGAAAG
GCAACATCTCATCCCACGCAAGGCAGCATCTCATCCCACGCTTGCAATCT
CATCTCGAAGTTGTTTGTTTGGACGGCTGTGTGAATCTTGTGCTGAATTC
TCACGATGTTCAGGTGTACCATCCAAAACTAGGCTGTTTTGCCGACTTTC
CAATCTCGAACATCTTGACCGTAGCGCTCGTATCTTTGTAAGAATTCGTT
CCAATTCGGAGGTATCATGCTGTCAAAGCTCTCAGGGTCAGAACTGATGT
CGTACAAACAATCGGGCACTTTCGGagctttttgaaataaaactcacGCA
ACCCACGCACTTAAACATGATAACTTAAACACGGCACTTTTCAGAGATTC
TTTTAacaaaaatgttacaaaatttaCATTACAAACGTTTTGAATAACTG
AAAACACTCTCTAGATTAGATTGAAAATCCAACGTAACACATTGTGTAAT
GAGATAAGGCTGATTATTGCTGATAATTAGATATAAATTGGTCACAAAAG
GTTTCTAGATCTATAAAGGTGTCATATTTTTCTTTCGATTAAACTGACTA
CAACCAAATTTGAGCCTAATTGGTGTAATTCTGATTTGTGTGAACCGCAC
TGTCATTAAAGTCTCTTTGGTagtctttaattttgaaaaaaagtgatttt
tttgtaaagATCTAACATTTTTGGACATTTTACCCCGGATTTGaggtatt
ttgaaattttctaactTAAAAACTGATAAATTTATTAGTTTAAAGGCTTT
TTATTGGGAATTTTAATAGTTTTAGACTGTTTGAGGGGTTAATCGCGAGA
CATTAgctcaaaaatttgaattttggtcaaaaaatgagtattttttgcaa
tttttaccccctgaaaataaAGAATTAAGCCCCCAGTGGATAGTTAATCC
TGATATTATGATGAGAGCAATCACGATCTATCACCACATAACCTTTGAAG
TATCATAAACAGTTTTTCGTTTGCGTAGGACCACTTTTCTGCTGAAAAAA
TACGATTTTGGGGGTTTTTTTCGTGTTTTACCCCCTGTTTTCTTTGGTAC
AGAACCCCCtggtaaatatttttgaattttcttttttcaaaatgttattT
TACCTATTTGTAACATATTTGGAAAGTTTCAAGCAATAACGATTTTTAGA
TAGTGCAGAATCGCACTTCTAAGTTACCATGGTGTTTCAAGTCTCAAGCA
AAATCCCTTACAAATTGGTATTTTGGCTAAAAACACCCCCACTTACCTAG
CTTACCATTTTAGTTAGCCCCCTTAACAGCCTATTTACCGTCTCATTCCT
GAAAATATAGCATCTTAGCAACCCAAAACCACCATCAAACATTTTTCACC
TCTTGGGGGACGCAGACCCCCCAGATCGACCTGGTCTAAGGATAGAAAGT
TAGATAGACATTTTACAAATTACGGcacgttttgaaattattgccatgat
gattaactcccagcggattttattacaactacttattcttttcataaaaa
accaTTTAATGTCTCCAGGGATGtgatcaccatggtaattgtttgaatac
gaggcaagtgatgttcgtgacgtaatttatgaaaaggtctattatggaAT
TTTTTCGTTTCAGAATCCCTGTATGCAGAATGCATTGTTATGTGAACATG
GAAGTATTTGCTCACCGAACCGCTTGACTAAAACATATCAATGTCTCCAT
TGTTTCCCTCCATACACTGGCAAACATTGCAATGAAACTGGTAATTATTA
TTATTGATATGCGTAAGCCAAGATTACGTCGTTTTTCATATCGAAAACAC
TGGAATTTTACCCCTGagtgttacacgttttttttttaagaaaaacgagg
ttcagaatgcctaaaaactaagaaacatgctgaggctgagaatgagaaaa
taaaattttttaattcgttttttaagAGCTTTGCaaacaaaacaaatgtt
ttttatttctttccatgaaaaataggctgtcaatctaatcactgtagaaa
gaattcAACAAAGATGAAgggcaaatattaccatattaatgtctagcaga
ctgtattaATATACATATTTACTATTGACGAATTCCTCAGAAatctccaa
gtgtaattgaaattggtttctttcaaaaaaatcttctacatgattcccaa
atgtataacagtaattactaagtTATTTATTATGGTAATGTTACTttaat
ggaatcgaaataattGACCAAATCTTTTTGTTACGATTCTTGACTCTTTT
TAAAAGGCGttgatgacatttttaagttgtgttttcaatgacgcgaaaaa
aataatatcaactttgaacttaatccaagatcttaaatggtcgtcatggt
tacttttctctgccttgattgcgcgctgaatagaatccgGATGGTCGGCA
CCGGGCGATGTATGATTTCAGCCTGTGCTTTCACAGTAAAGATTGGCTCC
actcatttaccttgagtgccacCCCCCCCTCCCCACGGTTTTATCCCGTG
GAATCGAAAACTTCGGTTTCTCTGTGTAAATTAATTACAATTTAAGATTT
AACCAATGCTGGGCTACATATTACCAtctagtagggggaaatttgttcgt
ttttttgaggtcgctcgatttttttagtcaaagcacttgttatacatttt
tggaaagctaaggggtaggggaatcaaaataNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgctttga
ctaaaaaaatcgagcgattttacaaatttccccctactaatccTTCATTT
TAAACATAAAACCTCAAAGGCCAGAAATTTGAAGTTATCTCTTGTGTAGA
CTGTAGCAATGCTGGTTTAATTTTCTTGATTATTTTGTCATTTCTTCTCC
CTCTCTCTTTGAGGCGGCCGGTCGGGCAAGGGACGCCAAACCGGGTTCTA
GACTTTTCAACCTTTCCTTTTCTGCTATACTTAACTATATGGTTAGACTT
TGTGCCtatgttttaatttctttcttcttgttaAGCTGACAGGTGACTCT
AGAGTGGCAGGAGATGCTTAATCAAGCTAGCGCACCTGATCTCAAACTTC
GGTCTTCAGCTTATCACTTCCTTTTGTGTCTTGTGCAttccttttgtttt
ttactttttggacctaccccggtggggtggaggtcctataaattaaccca
tgttcgttagttagttagtacgttagttaccaacttttctcgagattggc
tcatttaatttttctgattttttgcacaaaggtgttactataaaccctcg
aatgtgacggagcccgattttcgaaaaaaaaaattttccggccggtagaa
ccggaaatgtcccgaaaaaagcggttttttgagattNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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atatataaatcgaaatttaaaattatacattacttccattaaattctaat
tattcgttttataaataggtaggtccattaaagtattacttgttttattt
ctttcttcATTGGGTTTTTATTACAGATTGTCATGGTTAGTCGCTAGTTT
GTATCTTCTTCAGTGTATATAACTTcactatatttctttttttaaggtCC
ATCGATACCCTCGACGATTTCGCAAGGTAAGATAAAAAAGGGTGCGACAA
TTTCGTTGCTCCGAGGAAAATAGAGATCTTTCAGGCTTTTGGTGGGTTGT
TTAACgaaagaaaatattattattattctagACGTCTATTGGtaaatttt
gaactttgaaatctattttttttaaatgcaatGTAAAGATACATCCAGGT
TTCCTTGTGAAAAGGGAAGGTCTTTGTGGGGTTTTTATGCATGATCGTTG
ATCTTGAAAATGTTATCTTAAATCGTTTTTGGTTGGTTTTATGTTCTATC
CAcaacagggtgtccggaaaaaagtatcgagctgaaacacaactatgagt
aaaaataatttatgtgtatgttcacaaagttgtattttaaggcttgggga
cacgagaagttttttttcacgtttgtgcaatgcaacatgcgggaacatgc
tccatcccaccaacacaagaaaaaagtgcttgtcctatggtttctttttt
tgttcatgggacaaaaagtgagggaaatacctaaaagacacgctgatttt
gtcccaaaAAGaagattcgaatcaattttgctccattgtcccagggacaa
gaaagaaagaaaaatggggttgAGACACGaaaaagcgtttcaggttggtg
ggatggtgtccccaagcctttaagtTCCCCCTCCTTTTTTGAAGATGTAT
ATTTTGTCCAACAAAGGATTTTTAAAAAAGGTTATCGATTAATGCCTTTT
AGAAAACAAACTTTTCTATATAATAAGGCTGTGATTTCTCATATTTCGGC
GTGGATCATCACAAACTTATCTCcacaataatattttcaaactcGATGCT
TTTTTCCAGACAGCATGTACAATCTGGATAACGTTTTTTTACAAactctt
tattttcattgtttttaaaagtagaaaaaaactttttcaaaagtcgTTTT
TAAACTATTATCCAATTGACAGTGAGCTGATTTCACAAAATTCGTTTACC
AAATCAATCATCTATTTTTAAGACATTTTACTTGGTAAAAACGCTTCCTG
TATTGCTTTGAAAGAACATTTCAATATACCAAACGGTTTGCAACAATACA
CAATACATCCATGGAGAGACCAACGAAAAATTCATATAAAATGTTCAGGT
TCGGAAGATAATTACATTTACTTTGAAGGAAGAATATTGTtccaattttt
gtaaattttaggTAGACtcgctaattttttttccaaagctATTTCGcgag
attttattttatttcaagtaTCATTTCATCAGATAGATATGCAGTTCTTT
AAGGAACTAAAAATttgattcgaattacagagagtaatttcaGGAAAACT
CGAATGATAAGAATTTGAATTAGAACGAGTTGACTGTATGTCTACACTTT
TCTGAAACTTTTAAACTAGctgatatattttctttttctttttaaaatca
ggAAAAGTTATGAGATTTACCCGACTAGACACAAGAGACCAAGCTCCAGT
GAAGGAACTAAAAGCTGCGTCAATGGAAGATGGTCTTGTGCTTGAGAATA
ATTATCGTGCGCATGCGTCCTTTCTACGCATGGCTAAAATACTAATGAAC
TTTGAAACCATACGCATGAAATGTGTTCGAAACACAACAGAATTAGTTTC
ACTGGGCAACAAAAGACAAGCTTCTGATGCCGATTTCAATGTTATACGAT
ATTTCTCAGGAGAAAGTGATAGCCGACCTGTGGAGACGACAAGTATTTGG
AGATCCAGGCTGAATGGGGTGTGGGATGATTACCCAATTGATGCAGTCGA
CGACCTGTTATCTGCTGACAATGTTGAAAAAGAATATCGACCTTTCAAAG
ATATTTATATAGGTAATGATGGTTTAAAAATGACATTCACAAATGAATCA
CAACAATGCTTTGGTCCTGAAGGCGATTTTAACCATTATTTACTCGAAGT
TTATTGATGAGAAATGGAAAcatatttctgacaaaaaaatGACCTTTCAA
AGATATTTATATAGGTAATGATGGTTTAAAAATGACAGTATNCGACAGAA
TAATGACCTTTCAAAGATATTTATATAGGTAATGATGatttaaaaatgac
attcaCCAATGAATCGCAACAATGTTTTGGTCCTGAAGGCGATTTTAACC
ATTATTTACTCGAAGTTTATTGATGAGAAATGGAAACATATTTCTGAAAG
AATATCGACCTTTCAAAGATATTTATATAGGTAATGATGGTTTAAAAATG
ACAGTATGATACTGGTCCGAACTTCCTATATCTGTAACCGAAAAATGAAT
CGATTTTAGACACCGAAGTTTTTGCTTTCGTTTAGGTACTCGGTATCGTA
CTTTTGTGAGGGAGATTAataccaatgaagtataagcccgaagggctaga
agagAATCTTTGACCtgtctcaggcaagaaaaagtgaagccttaaaatgg
gcgctgcatttttgacgacgggTTGAATGTAGCAGTCCTTTTGTTTTcta
gtgatattttttttcgaaatttagtggtaaattttagtttcaatcagcca
cgtgtgtaaaaaccaggtggCTGGCGcaattttggtaggatttgttggct
tcaaatcctaccaaggagattcacTTCTATTTCATTCAATTCATTGGTTA
ATAATTTGGGCCATTAATGGATCTTTTTCGGAGGGGGGGTTATTATTTTT
AGCTGATCACTGAAATTATTCttcaatttaattatgttttcTAAGACTGT
ACATTTTTGTTCTTacatttacaatttttcatctttggAAGAAACTGAGC
ATAATTTTAGCCAAAACAACTAAGTAACTATTTTTCCAATTGAATTAAAC
TTCAATTAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000028XLOC_000028Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000052-exon-sc0000001-1491911889:1153534..1153747TCONS_00000052-exon-sc0000001-1491911889:1153534..1153747Clytia hemisphaericaexon
TCONS_00000052-exon-sc0000001-1510915933:1153534..1153747TCONS_00000052-exon-sc0000001-1510915933:1153534..1153747Clytia hemisphaericaexon
TCONS_00000052-exon-sc0000001-1575043694:1153534..1153747TCONS_00000052-exon-sc0000001-1575043694:1153534..1153747Clytia hemisphaericaexon
TCONS_00000052-exon-sc0000001-1491911889:1156866..1157330TCONS_00000052-exon-sc0000001-1491911889:1156866..1157330Clytia hemisphaericaexon
TCONS_00000052-exon-sc0000001-1510915933:1156866..1157330TCONS_00000052-exon-sc0000001-1510915933:1156866..1157330Clytia hemisphaericaexon
TCONS_00000052-exon-sc0000001-1575043694:1156866..1157330TCONS_00000052-exon-sc0000001-1575043694:1156866..1157330Clytia hemisphaericaexon
TCONS_00000052-exon-sc0000001-1491911889:1163397..1163523TCONS_00000052-exon-sc0000001-1491911889:1163397..1163523Clytia hemisphaericaexon
TCONS_00000052-exon-sc0000001-1510915933:1163397..1163523TCONS_00000052-exon-sc0000001-1510915933:1163397..1163523Clytia hemisphaericaexon
TCONS_00000052-exon-sc0000001-1575043694:1163397..1163523TCONS_00000052-exon-sc0000001-1575043694:1163397..1163523Clytia hemisphaericaexon
TCONS_00000052-exon-sc0000001-1491911889:1168030..1168059TCONS_00000052-exon-sc0000001-1491911889:1168030..1168059Clytia hemisphaericaexon
TCONS_00000052-exon-sc0000001-1510915933:1168030..1168059TCONS_00000052-exon-sc0000001-1510915933:1168030..1168059Clytia hemisphaericaexon
TCONS_00000052-exon-sc0000001-1575043694:1168030..1168059TCONS_00000052-exon-sc0000001-1575043694:1168030..1168059Clytia hemisphaericaexon
TCONS_00000052-exon-sc0000001-1491911889:1169056..1169181TCONS_00000052-exon-sc0000001-1491911889:1169056..1169181Clytia hemisphaericaexon
TCONS_00000052-exon-sc0000001-1510915933:1169056..1169181TCONS_00000052-exon-sc0000001-1510915933:1169056..1169181Clytia hemisphaericaexon
TCONS_00000052-exon-sc0000001-1575043694:1169056..1169181TCONS_00000052-exon-sc0000001-1575043694:1169056..1169181Clytia hemisphaericaexon
TCONS_00000052-exon-sc0000001-1491911889:1169485..1170895TCONS_00000052-exon-sc0000001-1491911889:1169485..1170895Clytia hemisphaericaexon
TCONS_00000052-exon-sc0000001-1510915933:1169485..1170895TCONS_00000052-exon-sc0000001-1510915933:1169485..1170895Clytia hemisphaericaexon
TCONS_00000052-exon-sc0000001-1575043694:1169485..1170895TCONS_00000052-exon-sc0000001-1575043694:1169485..1170895Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1153534..1170895 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0111106	0	0	0	0	0	0.0953281	0	0	0	0	0	0.172738	0.328118	0.16396	4.11545e-09	0	0.000335592	0	0	0.881059	0.337814	0	0.70771	0.209233	5.82823e-10	0.37801
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000052 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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