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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000040 ID=TCONS_00000040|Name=TCONS_00000040|organism=Clytia hemisphaerica|type=transcript|length=5127bpRun BLAST on NCBI protein sequence of TCONS_00000040-protein >TCONS_00000040-protein ID=TCONS_00000040-protein|Name=TCONS_00000040-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1322bp MKKRRCFTVVCHFPSLCQPVKVGRSLVHVAFVNRNGESVYIKDETPNQLDRun BLAST on NCBI transcript from alignment at sc0000001:1055158..1070141+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000040 ID=TCONS_00000040|Name=TCONS_00000040|organism=Clytia hemisphaerica|type=transcript|length=14984bp|location=Sequence derived from alignment at sc0000001:1055158..1070141+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:1055158..1070141+ >TCONS_00000040 ID=TCONS_00000040|Name=TCONS_00000040|organism=Clytia hemisphaerica|type=CDS|length=35694bp|location=Sequence derived from alignment at sc0000001:1055158..1070141+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000040 vs. Swiss-Prot (Human)
Match: MATN2 (Matrilin-2 OS=Homo sapiens GN=MATN2 PE=1 SV=4) HSP 1 Score: 92.8189 bits (229), Expect = 1.087e-18 Identity = 50/124 (40.32%), Postives = 66/124 (53.23%), Query Frame = 2
Query: 4751 CSSTKYGCEHFCITLLHGGPRCMCRNGYQLALDGQHCLYEGECEPKAHGCDQACKFVTDGFQCQCRSGYVLKKTAYKSSCQDLDECAMDMHSCSHGCLNTPGSYVCQCPGGYQLGTDRLTCQLI 5122
CS+ ++ C HFCI + G C C+ GY L D C + C + H C+Q C V F CQC SGY L + + C +D CA + H C H C+N GSY+CQC G+ L D+ TC I
Sbjct: 242 CSTLEHNCAHFCINI-PGSYVCRCKQGYILNSDQTTCRIQDLCAMEDHNCEQLCVNVPGSFVCQCYSGYALAEDGKR--CVAVDYCASENHGCEHECVNADGSYLCQCHEGFALNPDKKTCTKI 362 HSP 2 Score: 86.2705 bits (212), Expect = 1.074e-16 Identity = 45/124 (36.29%), Postives = 62/124 (50.00%), Query Frame = 2
Query: 4751 CSSTKYGCEHFCITLLHGGPRCMCRNGYQLALDGQHCLYEGECEPKAHGCDQACKFVTDGFQCQCRSGYVLKKTAYKSSCQDLDECAMDMHSCSHGCLNTPGSYVCQCPGGYQLGTDRLTCQLI 5122
C+ + CE C+ + G C C +GY LA DG+ C+ C + HGC+ C + CQC G+ L K +C +D CA H C H C+NT SY C C G+ L D+ TC+ I
Sbjct: 283 CAMEDHNCEQLCVNV-PGSFVCQCYSGYALAEDGKRCVAVDYCASENHGCEHECVNADGSYLCQCHEGFALNPD--KKTCTKIDYCASSNHGCQHECVNTDDSYSCHCLKGFTLNPDKKTCRRI 403 The following BLAST results are available for this feature:
BLAST of TCONS_00000040 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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