TCONS_00000035 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000035
Unique NameTCONS_00000035
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length727

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000035 ID=TCONS_00000035|Name=TCONS_00000035|organism=Clytia hemisphaerica|type=transcript|length=727bp
CAAAGGACCAACTTGAAAGAGAAGGCGGAACAACAAAATGTCAAAACGAA
CACAAATCACATCAAATAGTACAAAGGACAGCGATTTCTCGACAGTCCAT
TTTGACAATGCAATGCATGTTTTAATCACCAAAGAAATCAAACAGGATGT
TCTCCCTAATGAAGAAATTCAAGTACCAGAATGGGAATTACCACCAGTCG
ATAACGAAGGCGAACAAGTTGGTGAGAGTATCCGCGAGAAAGAAGAGAAA
TGGACAGACCTGAGCACAAAACATGTTCGATAGATGGAAAACAACAAGGG
TAATGCCGATAACACCTACGGCCTAAGTTTATTCTTTAAACAGGAAGTAG
GCTTCAAGGCTATTCATTGTACTATAATACGGATACTTGATAATACGGAA
GGGACCACCAGCCAGTATGAGATACGACCGGATTACATCGGAgctgaaaa
aatcgaaaaaaatatctcaATGGAATTCATTTCAACAAATTATTTAAACA
TGGGACATGATTACACACTAGACTGTATGCTCAATGTCAATTGGTGTAGC
CTGGATGTCAATGATGGTCAGGCTAAAGTACGGTCTGGTGATTTCAAATC
GACGGAATGGACAAGTGTTTCTGGAAGGTCGAGAACAGGCAAATGGCTAA
ATTACAAACTCAAGATTAACATGGAAGATATTGCTTAATGGTTCACTTGA
TTACATCTGTCAAAACTCACACAATGA
Run BLAST on NCBI

protein sequence of TCONS_00000035-protein

>TCONS_00000035-protein ID=TCONS_00000035-protein|Name=TCONS_00000035-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MENNKGNADNTYGLSLFFKQEVGFKAIHCTIIRILDNTEGTTSQYEIRPD
YIGAEKIEKNISMEFISTNYLNMGHDYTLDCMLNVNWCSLDVNDGQAKVR
SGDFKSTEWTSVSGRSRTGKWLNYKLKINMEDIA
Run BLAST on NCBI

transcript from alignment at sc0000001:937598..953993+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000035 ID=TCONS_00000035|Name=TCONS_00000035|organism=Clytia hemisphaerica|type=transcript|length=16396bp|location=Sequence derived from alignment at sc0000001:937598..953993+ (Clytia hemisphaerica)
CAAAGGACCAACTTGAAAGAGAAGGCGGAACAACAAAATGTCAAAACGAA
CACAAATCACATCAAATAGTACAAAGGTAAAGTTTTCTAAGCATCAGTCG
AACATCTAGCCAgtgccttcccacaaaccaaatttttactTGTTAAAACG
CGATAAAAAAATCGGTTTTTGTCTAACAGGACATCGATCATCCTGCTCGA
CaccaaatatttaaaaaattcaacctCGACAGTAAATTTATTCTTCGTTG
AAGCATCCTTTAACTATAGAcggattgaaatatttttgatggtTAGAAAT
ATCCAAGCGCAATGTTCTAACCTCTTTGATGGTCGAAAATATCTTTTACG
CTCCGCGGAACATAGTTTTGATGACATTTTGTGAATCCTGGGGAATTCGT
CTTCCATAGACCCTGTAGAgtcaaaattaagaaaatattaGGCCAATATT
TTGCTTCGTGTACACTGTTTTTAAGAACGTTACGTTCAAGCGTGCATGCG
CGCTTGCGtgcatatttttaaattttagccCCTTAACCATAAATGTTCAC
ATACCCTGTTATGaaataaaaacgtgtactaTCTACCATTTTTATCTTTC
TAGGACAGCGATTTCTCGACAGTCCATTTTGACAATGCAATGCATGTTTT
AATCACCAAAGAAATCAAACAGGATGTTCTCCCTAATGAAGGTACTTAAT
AGACCTGAATAGGGTGAAAAAGATAAACTGTTTCGGCAATCTATGATTTG
TATGAAAAATGGCGCTGCTTGCATATAAAATGACATCAatggcgaaaagg
tctattgaattcTGATTTTGTTCAGCTTTTTCAGCTAAACAGGCTTTTAA
GACAAAAAACAAGGACAAAATTTTGAAGGGTCCACTCTTCGTTCTCATGT
GGCACTTACCCGCTGGTCGTTGAGGTTGATTCCCCTGGATTttgcttttt
aaatgtttatactttttacttttcaatCATTAGAAATTCAAGTACCAGAA
TGGGAATTACCACCAGTCGATAACGAAGGTGATGATTTGTTAACTTTTTA
CAAAGTccatagcgagattatgtatcggagatattctacggctacggttg
aagTGGTGAGGGTAATGGCGAGtgaggcaagtaatggcgggtgaaagcaa
gttcgatatttgacgtacggcattatgtcgacttgcttctacggtgtttt
ggtgtttttcccgtacaaagcaaagtagacaacgacacgACCCGTAcggg
cagccccgcaaccgtagccgtagaatatctccgatacataatctcgctca
TGTTACGTTCTTAACGTCCATTAGAACAACATTGTGTGTCAAATGTGTGT
AGATAACTATCAAGAGgaaaaatttcttgatattccaatgcaaaaaaatc
caaaaatttacaAGGGGGAGAGTCGCTTATTACGCACTTGAGATTGAGAG
ATCTGAGCGTTTTTTGAGAAACTTTAATCCTACGGCTGGCAAGGTTCAGA
TTTTCTAGGGGGTTTGGGTTCGATGAAAAAAAGCTCATGTAACCGTGACA
ATTTTGAGTACTGATTGAGGGTGTGAAATAGTGCTAAGGATTTTTCGTAA
TCATTTGCAAATTTCGGTGAGCCTTAACAAAATATTATTTGTACCATGCC
TGTTTGTTTGTCCCAAAAATTTCGGGTCAGCCTGGACACTTtagaaattt
ggcacacttattCCTTGGGTGTATACCTGTGAGCgttttttttgtctttg
tttttgGAGTTGGAGGCCTAGAACAATTTTCCCACTATTCCTCGATTGGA
CCCGGGAAGGGGACCTTGAATAGtcgagcccagtgcggtgcgcgCGTTCC
ACTTTTTGGAAGTTTCGTTGTTtttactaccttatcggcccttttttata
taaaacttattggcgttatttttaggctcgtggcgtaataaggaccGGTG
TTAagagggccggcgtaaaaagggccaaaattttgcaatttttacctaaa
agcggcgttaatttttaaccattttttctcaatggATTTTAGGCACGATT
AAAGGATGTAAACTATTCATTTTTGTTACTATATATCCAAAACtcaaaaa
tcaatgattttctatgcaattttcaacagtttaataataaaagatgatat
ttttacgtaaattttagttaatactCCCTGTTTTTAAACCTGAGTagcga
tttttacaagttttggcgttatttacggctTATTGGCGTAATCCctaaat
taggctgtggcggaataagggctggcgtaaagagggccgataaggtattt
gaaTATGAATTTAAGGTAAACAAACTTCGTtatctttttcattcattttt
atttcgttGATGTCAATAGGCGAACAAGTTGGTGAGAGTATCCGCGAGAA
AGAAGAGAAATGGACAGACCTGAGCACAAAACATGTTCGATAGATGGAAA
ACAACAAGGGTAAGCTACTGTTATACTCACCTTTTCTTGAATCTATATAT
TCTTCGTGACTTCAGTTGCTCtattttcgaatcttttttgTCCCTTCTCA
TACGGCCGTAGGCTgtacgcatcccctctgatatgttttgatatagggaa
tgctaatcgtgtatgaaattcccGTTCGAGAGTTAcccaaaatttgtttt
aatccatgggattttttcattcaaattcaatgaaattttatcTCTAATAT
AAACACTTTAACTAATcaagctaatcaagtttctaaaaataaaaaactct
cgAACGGgaatcccctatatcaaatcagCCTAATATTGCCGCTCAACCAA
ACGATCGACATAGCCAAAACATaatgagattttagtgtattctaacgttt
ttcagaatttaaagttcgggcgagaatagATATtgtagcacttccacttt
ctttcattgaatatttcgattttggatgggttcagtggcttctaggctat
attccaagccttattggagcaaatttgagctttgaAATCCTGAGATACTA
AGGTCGTAACTcataagtctcatgttaaaaactcagagttaaaactctac
tttccaactgtagtttaacgcgcttaaaatcatttgtggtgtttaaattT
TCACCGGGAAATaccctttgtctcaaatgttttgtccatgattgtagata
aATTATCAATATTTCGAGGGAGCCAAATATATTGTCCATCATTTCAGTTA
GATATGGTCCCTTTCAAAACAACAGACATGAGGAATGTTTAAAATTGTGG
AAAGATTTTCAGGCTCTTTGTTTGTCTCCACAATAGGGTCTTCctggaaa
aaattgaatatggggggatggaggatataaaATTTACCCCCAATGTTGAG
GATAttggtttttcgaagtatcgaaccccctggatatcctctcttataaa
gatgctttcccctggatatcgtattttttacacttgaaaagacactttac
cccctggatatccacttttgaaaaaaaattaataaccccctggatatccg
atatcctcaacaggggcacggactatttctggaaaagcctaatATGGGct
atatttttttggaaatttacctccggacattgtgacttttgacagcaggt
gtaaccccccccccttggacaagcatcagtttaccccctggacattcaaa
attaccctcaaacagagcaaagttacccaaaaatagagcaagtttacccc
ctggaaaaagcaaattttgtagatttttcactattcTCCGGACACTTTAT
CCTCCATCCCCCATTCACGGTAAAAGCACCAAAATAACGCCATCTGTTTC
CCCCAtttacggacattttctggaaaagcccaattattGATAGCTTTTCT
TGGCTCTGATTTCATTTGGTGTACCATTTAGTACAATTATTTTAAATATA
ACCAAAAATATATTACATTTCTTAAATCATAGTACATTATAAGTTAAATC
CGAAATTATgcaaataaattcatttattatgttacaaaataaaattaata
ttAAAAAGGAGTTTTTTGGGCTTTCGAAACCAGAATATTTGCCAAAAACg
ttactttttttgtttttgtttgctaaaacctctaagaaaatgaaagaaat
tagttGAAAAAGGTACCGATTCGCGAAAACGAGAATTTTACTTCGAACTT
TCTTTTGATGTTGATGGCAGCTTACCACAAATTAAGGCAAACCGTAGAgg
caaatttccaaaatttcgatTTGTTCACCCCTTTCGAAACTTGTAGACTT
TCCTTAATTCGAACTGCTATACTTATtcccagtccccgtcaaggagaaac
ccatATCAAATGCTTTCTAaagttcgaatctttctgttaGTGATTGTCAA
CTGTGTTTGTTTGGTGGTGGAATCAAAATTTTAgttcaatttcctttttt
ttttggctgaaaaaaaggaaatagcACCAAAATTGTTGATTGGAGTTATG
TAACTGCTTCGGGTAAGCCGCTTTATTCTTTGTGTTGTCTTAACCGCATT
GCTTTATGGGTATCTGTGGGTTTTGTTTCCAGGTCGCTCATCAACGTCTG
AtcaatcttcattttctcttctaacattttacagaccagattgtCTTGTT
CAGTTTTCATGTCCACAAGTCGTTCAGACATCGAATCTAATTGACTTTCC
ATTTTACGGACTTCGGCTTCTAATTTGGTTGCGCGCGTTTCCGTTTCGGC
ATGCTTTTCCCTTAGCGTGCGGATTTTTTCTTTCTGCGCATGCTCTCGTT
CCTTTATATCTTCCTGTAACTTCAACATATTTTGCAGACGTTTCGTAACA
TCCGCGTGCTCGCGCTCCAAACATTTAGTCCGCTCCTCTTCCGCATCGCA
CAGTTGCTCCTCATGACGTAATGCTTTTTCGGCTTCCGTAATTTCAGCTG
CAGTTTCGCTAGCCTTTGATTTCAAAGACTTGTTGGAAATCAGTAAATCA
CCATATTCTTCTTTCAGTTGTTTAGCCTTGAAATTCTCGTGGATATCATT
GACCTCAGTACGCTCCTTGAACTCATCAATACAATCAGCTTCGATTTGTT
GTTGTCGAACTTTCTCGCGTAATCGTTCGTTGTCGAGCTCTTTTTCACGT
AATGTTTCTTCCAATGCTTGTAGCTTTGCGTGCAACTCTAAAACGATCTT
CTCTTCCTTCTCTGTTTCCGTGTCTGTCACCTTGGATCGGAGGGAAAGAT
AAAAAGATTTAATCTTTAGAAAGAGTTATACTCAATAATTTGTAGCAAGC
TTAAGACGCCCTGCAGATAGGCGTGTAATTACATCTTTATTTTGTCTTCA
TTTCCGATGAACAACCAGAGGTATCTTCTGGAAGATggttaaaaaataac
aataacactttttttataagaatggtgtttttccaattcatcatgaatgt
tctttaatttttgagaaaaaatcatcctgaaatattcttaaggtATTCTT
AGATTTGGATCTAAACCCAGCAAAAATCTAGTATGTAATACATACTTCAA
GCGAAGATTTGACATTTTTGTGGAACCTTTTAGCATTCCTGGGGATTAAT
TGGCAATTTGATGGTAAAATACTCTATAAAACTGActtttcttaggttca
gttACCAAATTCCATGACGGtggatattcttaccatattctcaATTtgtt
ggccaatttcatcataaatattcttataaagtatattcttattaaaaaag
cgtgtatatgaCAATCAGCTATCATACCAAGTTTTATGAGCAAGTTTAAG
AAGTCTGTCATGAATTAATTCTTAGAAGATGACGTCATACCTGTATTTTT
CCTTTTAACTCGTCTTCTTTTTTGTGGGCAGTCTCGATTTGATCTAGTAG
TGTGTTGATTTTCACTTTCAATACGTTCTCCATATCCTCACGTTTCGCAC
ACATCTGAAAATGATAATATATATATCCTTTTTCATCTTGTGTTTCTCTG
CACAATTAAGAGTGCTCAATACTTGAGTAGAGCTTGTTACAATGTAGAGC
AATTTAGAGCTTGCTACATAAAGATAAAAGAAGGATATTTCTATATCCTT
TTTCATATGgatacaatttttttatataaggacgTCCACaattgaagcct
tcggatgattttaactttttaagtttcaaGTCTGAAAATGTTCctaattt
catcattttgtaagtatttttgggCAATCTTTTAAGAAATTTGATGCTTT
CGAGTccataaaaccttaaaatgttcttaacttgttcttgtaTATAAATT
GTTCTACTAAAAAACGGTtacctttttaagaaaatgactCAAAACTTTGG
CAAAACCTAACAACTACAATTCGAGCCTGCTCTTAAGAAAGTACAATTTC
GAAGCCTCTATTTCAAGTTGAGGCTCAgccaatacacctttcccgaattg
ttaGGTTTTTTTCGAAGGTCTTCAAACcatattgaaaactatatatttgT
ATTCCTCCTATAATGACAAGTGCatgctgaaaatttgagctcaaaagctt
ttttctatcaatttttatgactgtttttgtTCAAGGTGAAATCCCttata
aaaactaaaacatACAGCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNt
gtaattctattgtttataaagaaatttcaaatcaaaataactcaaGAACC
GGAAGTGCTTTTNNNNNNNNNNNNNNNNAATcaaaataactcaagaactg
gaagtgcttttttcataattctttttttatttgtttagttttgcgacata
caattttatgaaactaaatagaaacattcaaacattaaaacaaaaaagtc
caaaagcctaaataacaattcgggaaaggtgtataaTCAACTGATTAAAA
AGTTCTTATAGGTTTcatttttaagtcaattttttgTCTCTAAATTTCta
ggttttgttttcaaatttaattcgCTATGTATGCCTTTTTAGAATGATTT
CAGATCAGGTCAACTGGATTTCTAAAGGATAGAGCATTCATATAACCCTA
ATCTTTATAGCTTTATCCCAAATTACCATAGCATTGAGAAAACAAGATAA
TACCTTTTTTGCgatttgaaatttccaaaaaacgcaacccttttcttgaa
tttcagccTTGGTTTAAAATCTCAGCTTTATTCCACGGCCGaaggtaaaa
agaaaatttcgtcTTATTTTTCCTCTGCTTCTCAtactcattatttttta
tttttgttcatcttttCGTTTTAATCTTCctaattttgaataatttataa
tttttcattatttctctcctctttcttttatatGCTTCTTCAGTTCTTCC
TTGATAATTTTTTCCACTATTTTATTCatcatttcttttgttgtttttat
cgaCTTTTAATCAATACGAGAATAGTGCTTTTCTCTCTCTTTCTTAGTGA
AAAATCTCTCGCTTCTCGTTAAGCAGGCTCATTGGCTTATTGCAGTTACC
GTATTTCTTCGAATAAACCCCTTTCTTTTAAACAACCCcgctcgaataaa
cgcccttaCCTAAAggaaacattttcaataaaCGCCTCCTCAACGCCGCC
TCTCTCTCTTTCTTAGTGAAAAATCTCTCACTTCTCGTTAAGCAGGCTCA
TTGGCTTATTGCAGTTACTATATTTCTTCGAATAaacccccttcttttaa
acaccccctcgaataaacgcccctccctaAAGGAAACATTTTCTATATAC
GCTCCCTCTCTCTCTTTCTTGGTGAAAAATCTCTCACTTCTCGTTAAGCA
GGCTCATTGGCTTATTGCAGTTACCGTATTTCTTCGAATAAACCCCTTTC
TTTTAAACAACctccctcaaataaacgcccttACCTAAAggaaacatttt
caataaaCGCCTCCTCAATGCCGCCTCTCTCTCTTTCTTAGTGAAAAATC
TCTCACTTCTCGTTGAGCAGGCTCATTGGCTTATTGCAGTTACCGTGTTT
CTTCGAATAAACCCCTTCTTTTACACacccccctcgaataaacgtccctc
cctaaaggaaacattttcaataaaCGCTCTCTCTTTCTTGGTGAAAAATA
TCTCACTTCTCGTTAAGCAGGCTCATTGGCTTATTACagttaccgtatta
cttcgaataaacccCCTTATTTTAAACacccccctcgaataaacacccct
ccctaaaggaaacattttcaataaacgccccttcgaataattatttgaaa
caagtagctGTAAGGTAGAAATATGCGGAGGAAATTCTAGGTGATATGTT
GATAATAGCACTTTTCAGTATTCAAACTCGTTTTGACCCACTTTTATCTT
TGAAATGACATATTTGTAGTACTGAAGACATAAACACCCCTtctaaaccc
ccccccccccaaaaaaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNattgttgtttattgattttttttctcacaaaataa
atttcgaatgcaattaaaacgttcgatgcaaaaaaaatgtaaaaaaaaca
ttaaaatcaattttgtaaacattggtgccgcattggagagtgtgattgac
gattaattgctctctacaggatgcaattaacgattgaTTGCtatctttga
gggcgtgccgaataagaaaaaataacccatcgtgcgattatggCTGTAAT
GGCATGTATATTTGTCATCACCAGTTGTTAGCTGCCAGCACACGTGTCAA
ATATACCGGacttaaaaaccttttttgataACTTGAAAGTATGATTGTAA
AGTTTTCAAGGTAAATTCTGAGGGGACCACAGGATCTGTTCGAATTAGGT
GAGTTTTCGAATTATAGGAGTTCAACTGTACACTGGACATCGACACGGAA
AGGGTtaactcgggtaagttatggcatgtctcaaaaacctgaaaattacc
ataatttttgaaggccattagccggcagaaaatggggaaaccaatgattt
gctaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTACGCCcttatttt
tgcgaaaaaccgcaaaaaccaaaaagtgctgacgtcagcaaaacttgttt
tttaaatatctccagtttggctaatggtagaaacatgaaatttggaccaa
cgttgaatattattaaaaggatcattttataaaaaaaaacttttcgaaat
tttgctttcgtcagcagaaatcaacaaaatacgaaattttgcaataaagt
gctgatgtcatcaaaatttcaaattcttccTGGAGATGGTGCTTATTCAA
TGGGgacgcttattcgagcggggtgcttataatattatttaactaaaagg
ggggcgcttattcgagcggggcgcttattcgaggatttacgggagaaaat
gcccattttaagcctgaaattcaCGAGCCTTAGCCAAAATTTGCTGGGAT
GCTGATTGAACCTAACTAATGTTTAAACTTGGAGCAAGAAGAGAAGTGTA
ATATAGTCGAGTGCTGGAACGCCAAGGGGATAATCAGTAATCGTCCGAGT
TACGGAAATTCAAGTTATAGAGAGGCAGAATAGCCTAAGAATCTTCTCGA
CGGACCAGAAAAATCGTTGAGTTTATGAAGATAATCGAGTtgaagaggtt
cgagttatggaaagtcGACTGTAGTCGACAAAGAACGGCGTGAGCGAACG
GTTTCCTTGTGATCTTTGGCtcttccggcgatttttagaaagttccctct
acaaaatcagtttcattgaaaattgaaccatgcttaatcgtggacatttt
cttataaataatctttttgttttgaaaaagcaaagattcaaaaattcaat
gaaaatctgcaaaaaggcggtttccggcatatttccgttATTTTCGACCG
GGAAAAAAAATTCCTTGAAAATCGGACTATTTTagacattgctaatacgc
atcctaatgaaactaatgatgaaatctcgagaaaatgccaaaaaaacggt
tttccgaaaaattgcaaaaatttgcttaagccatcttttacctatgatgg
taacCTACtttgatgcaaaaaatcagaaaacattAATGAtgcaatatttc
acaaagtccaaaaaaaccgtttttagTCGttgagctgaaaatttttttgc
aaaaatctgtttgCGCCATCTTTTACTTACGATGATACctaccctacttt
cgtgcaaaaaatcagaaaaaactaatgatctaatttttcacaaagtaggc
gttttttgaatatttgtgtttggacatgaaattttggttgctagaCGAGT
TCATATAGAAAAagtggccaaattcgatattttttttataagcttaTTAC
CAATTACttagttattagcttttctcgagattggctctttcattctttat
gattttttgcacaaagatgcataactataaaccctcgaatgtgacggagc
tcgattttcggaaaaaaaaatatgcGTAGATTTCAGCCGAAAAACGGCTC
AAAAagggactttgtgaaatattggatcattgtttttttctgattttttg
catgaaagtaggtaaaagataacctgagatcagattgtggtcgttttctg
cccaccacgctgaagctctaaagggatgggtgaaaacatacaatctgacg
aatatgcaatctcgaaatcgtaaggaccgcgttcgtcttaaaggactggg
gatgacaacaaagttacgtgattgtgtttatgaatagggtgccgtatcag
tttttgactttatggcgcacaacaagattcttgttgtagaattttccgcg
ggaggactattttcctcagatgtataattttcaagcgcctttagaggttt
accgtgcgcgtaagaaaattatcaacatctgttatcaggttagtaaaaga
tggctcgagcagatttcggctcaaaaaacgcatctttatctataggAATC
ACAAtcacatggaattattatagacactggaaaaacaacgggctgatttt
tgccaatttctcatgtgcaagccttgtccgcagtaatgacattattgttc
accctcctaccaccattaaatgatttttcgtagcatttttaattgcattt
ctcatcaaaatacacttatccaattcccaaatgagactttaagttctcct
cagagattcaaactcatctagttaattactaattatacgtcgttatgacg
ttttaaatttcgagaATGATGCAAAAACAtactatgtataagaaattgaa
tattgacaccagaaatttttaaacttcaacctccaaaaatccaccgtgcc
accacgtgccaccaaaagattttcataccacagtggagctatgagactca
cgtctaatataTGTCAGTCTCAGCTCTTCTCCgagaaatattggaaagat
aatcccaattcaaaatttcgtgtcattataagcattttgtctgattttac
tcgtctgatgattttctcacaccagatttcataaatgtgttcgcttggta
ttctagtatttattttcaaacttttagccagcaaaagtgcgatcagaaaa
agttagagaactttttagaaataagagtattaatcatttttcaaaatcag
agtccttcgagccgccatgacagttgtcctttgcggacaaagcttgtaca
ttgattgttttctgaaacaatagaaaaacaatacttcgctctccaccgtt
tcattcgatgtttatccagagtctctataataaatccatNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgct
attaataagcatacatcaatgttattagccaaattactcaattttttgat
gagatagatgttttttttgctcacgaagtcttgaatatgaaagaatattg
tgtttgagcatgaaattttggtttctgaacgtgttttttataagaaacaa
acgacgaatctttatataccttaagggaacttattttggtgggaactaat
tttgacgagtgGCAAAAATCttgaacatttttaattttggcgagaactta
ttttggcaaatgattcttttttttaattttggcgggaactagtTTTGGCG
AATGGCAGCTTAaatatgttctattttgccttatttgaagctttttttgt
gaactcaagaagttatttaggctaattttggcgagaacttattttggcaa
gtgagcaaaataattaattttggcgggaactaattttggcgaattttgtc
taaGTTCGCCGAATTCGCCAAAANGGTTATTTTGGAAGTCATGATAAAAT
TGGCGAGGAATCTATTTTGATCAGGAagcaatttctttcattttggcATG
AATGAATTTAGTGATTTATGGACAAGATTCGCtgaattcgccaaaattag
ttcccgccaaaataagttcccttaaggtatcgtcactatttgtgttctga
atgattgtttagtgtagatatcaattatatatgtcttaaatcaggtaggt
ccataaaagtatcgcttgttttttttaatcCGACTcggtcacattttggg
cattgttaatacgcatctttgtgcaaaaaatcggaaaaagctaatgatga
aatctcgagaaaattccaaaaaacgAGTTTTTTCCGGaattcgaaaatcg
ggctccgtcatattttgggtattgccaaaaatcagaaaaactaatgagcc
aatcccgagaaaagctagtatgtaacagacgaacgaagccaattaattga
taaaaaaattaaaagtaagTTTCTTAACCAGActgtttttgttgcaaaaa
gaAGTGACCCTTAAAAAGTGGTAGACCTTTTATAAATTGCCATACCAAGT
AGCATCATATTTCAACCCCTTATGACGTTGTTGTTCTATTGCGTAAAATT
TTGTATGCTTTTTTCGCATGTTCAGAAGTGTTCTTGCGTGAGGTATTGTA
CGGATTTTTCTGTAAACGAAAGCTTTTTCCATTTATTGTCGGAGAGTTTT
AGTCAGTGTTTGGAtcatcatgaattttcaatttttgatgctGCTTGGTA
TCTTTGGTTTTCAATGTAAGTTCATTTAACACGCTTTTTATACAAATAGA
TACacatttttaatttataagcAGTCGAGTTGCTAAGGGTCCAGCCCAAC
CTcgatccctgcgtattatcagctttttgattcttactgatagcgctaga
taataccctggcattggctggttttcgaacgcgaaagattacgtaattca
aaaacaaaacgtcagatttcattcgcTCTTCTTTTTTGAGATCGttgcat
tgcagtgtaactttgtaacgtcagaatatttcatgacgtattgttttgag
aagttccccctctcagagggggaactctcgcatcagccaacaccagggta
ttctctggcgtcaatcagtaacgtaaataaagcctgggatacacggggac
gaggttgggtcCAGCcctgaaaatggccaaaaaattaagcaaCTTCGCCT
TAGCAGCCTAGCCCTGAAACTGAGCATGAACCGGTAAAGCAACCGAATAT
ACCTTAAAAAGAGACATTTCCGGCATTATTTGGCATTAAAATGTGTACCG
ATGGTATTCGAATACTATACTAGAcataaaatgagataaaaagccaaaat
ctttgaagttgCTAGGCATTTTTGACTCAAAATCCATAAGCAACTTATTG
GCCGAAATCCAGAAAATCCTTAGCAACTCCAGCCCTGAGTCGAAAATTGG
GGTTGCTTCATGGCGTTCTAAAAAAAAGTATATTACAGTCAACtcactct
aattcgaacctctattattcaaatctttctgtaattcgaactattGGAAG
CTGGAATGTGGTTTTAAATTATAttctaaattaaattaaaaaagaccttt
aaagtttgaaccttTCTTTAGTTAAATTTGGATCGGCcttttaaaaagtt
ataaaagaAAATACGAAAAAGATTGTGTTCCAAAAAACCTCACGATTAGG
TTGAAAAAATTAATCATTATAAAATATCTTTTCTCCTCTCTCCATGTTTA
GGTAATGCCGATAACACCTACGGCCTAAGTTTATTCTTTAAACAGGAAGT
AGGCTTCAAGGCTATTCATTGTACTATAATACGGATACTTGATAATACGG
AAGGGACCACCAGCCAGTATGAGATACGACCGGATTACATCGGAgctgaa
aaaatcgaaaaaaatatctcaATGGAATTCATTTCAACAAATTATTTAAA
CATGGGACATGATTACACACTAGACTGTATGCTCAATGTCAATTGGTGTA
GCCTGGATGTCAATGATGGTCAGGCTAAAGTACGGTCTGGTGATTTCAAA
TCGACGGAATGGACAAGTGTTTCTGGAAGGTCGAGAACAGGCAAATGGCT
AAATTACAAACTCAAGATNAACTGAATGGACAAGTGTTTCTGGGAGGTCG
AGAACAGGCAAATGGCTAAATTACAAACTCAAGATTAACATGGAAGATAT
TGCTTAATGGTTCACTTGATTACATCTGTCAAAACTCACACAATGA

Coding sequence (CDS) from alignment at sc0000001:937598..953993+

>TCONS_00000035 ID=TCONS_00000035|Name=TCONS_00000035|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at sc0000001:937598..953993+ (Clytia hemisphaerica)
ATGGAAAACAACAAGGGTAATGCCGATAACACCTACGGCCTAAGTTTATT
CTTTAAACAGGAAGTAGGCTTCAAGGCTATTCATTGTACTATAATACGGA
TACTTGATAATACGGAAGGGACCACCAGCCAGTATGAGATACGACCGGAT
TACATCGGAgctgaaaaaatcgaaaaaaatatctcaATGGAATTCATTTC
AACAAATTATTTAAACATGGGACATGATTACACACTAGACTGTATGCTCA
ATGTCAATTGGTGTAGCCTGGATGTCAATGATGGTCAGGCTAAAGTACGG
TCTGGTGATTTCAAATCGACGGAATGGACAAGTGTTTCTGGAAGGTCGAG
AACAGGCAAATGGCTAAATTACAAACTCAAGATTAACATGGAAGATATTG
CTTAAATGGAAAACAACAAGGGTAATGCCGATAACACCTACGGCCTAAGT
TTATTCTTTAAACAGGAAGTAGGCTTCAAGGCTATTCATTGTACTATAAT
ACGGATACTTGATAATACGGAAGGGACCACCAGCCAGTATGAGATACGAC
CGGATTACATCGGAgctgaaaaaatcgaaaaaaatatctcaATGGAATTC
ATTTCAACAAATTATTTAAACATGGGACATGATTACACACTAGACTGTAT
GCTCAATGTCAATTGGTGTAGCCTGGATGTCAATGATGGTCAGGCTAAAG
TACGGTCTGGTGATTTCAAATCGACGGAATGGACAAGTGTTTCTGGAAGG
TCGAGAACAGGCAAATGGCTAAATTACAAACTCAAGATTAACATGGAAGA
TATTGCTTAAATGGAAAACAACAAGGGTAATGCCGATAACACCTACGGCC
TAAGTTTATTCTTTAAACAGGAAGTAGGCTTCAAGGCTATTCATTGTACT
ATAATACGGATACTTGATAATACGGAAGGGACCACCAGCCAGTATGAGAT
ACGACCGGATTACATCGGAgctgaaaaaatcgaaaaaaatatctcaATGG
AATTCATTTCAACAAATTATTTAAACATGGGACATGATTACACACTAGAC
TGTATGCTCAATGTCAATTGGTGTAGCCTGGATGTCAATGATGGTCAGGC
TAAAGTACGGTCTGGTGATTTCAAATCGACGGAATGGACAAGTGTTTCTG
GAAGGTCGAGAACAGGCAAATGGCTAAATTACAAACTCAAGATTAACATG
GAAGATATTGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000023XLOC_000023Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000035-proteinTCONS_00000035-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000035-exon-sc0000001-1491911889:937598..937673TCONS_00000035-exon-sc0000001-1491911889:937598..937673Clytia hemisphaericaexon
TCONS_00000035-exon-sc0000001-1510915933:937598..937673TCONS_00000035-exon-sc0000001-1510915933:937598..937673Clytia hemisphaericaexon
TCONS_00000035-exon-sc0000001-1575043694:937598..937673TCONS_00000035-exon-sc0000001-1575043694:937598..937673Clytia hemisphaericaexon
TCONS_00000035-exon-sc0000001-1491911889:938201..938288TCONS_00000035-exon-sc0000001-1491911889:938201..938288Clytia hemisphaericaexon
TCONS_00000035-exon-sc0000001-1510915933:938201..938288TCONS_00000035-exon-sc0000001-1510915933:938201..938288Clytia hemisphaericaexon
TCONS_00000035-exon-sc0000001-1575043694:938201..938288TCONS_00000035-exon-sc0000001-1575043694:938201..938288Clytia hemisphaericaexon
TCONS_00000035-exon-sc0000001-1491911889:938581..938625TCONS_00000035-exon-sc0000001-1491911889:938581..938625Clytia hemisphaericaexon
TCONS_00000035-exon-sc0000001-1510915933:938581..938625TCONS_00000035-exon-sc0000001-1510915933:938581..938625Clytia hemisphaericaexon
TCONS_00000035-exon-sc0000001-1575043694:938581..938625TCONS_00000035-exon-sc0000001-1575043694:938581..938625Clytia hemisphaericaexon
TCONS_00000035-exon-sc0000001-1491911889:939967..940056TCONS_00000035-exon-sc0000001-1491911889:939967..940056Clytia hemisphaericaexon
TCONS_00000035-exon-sc0000001-1510915933:939967..940056TCONS_00000035-exon-sc0000001-1510915933:939967..940056Clytia hemisphaericaexon
TCONS_00000035-exon-sc0000001-1575043694:939967..940056TCONS_00000035-exon-sc0000001-1575043694:939967..940056Clytia hemisphaericaexon
TCONS_00000035-exon-sc0000001-1491911889:953499..953826TCONS_00000035-exon-sc0000001-1491911889:953499..953826Clytia hemisphaericaexon
TCONS_00000035-exon-sc0000001-1510915933:953499..953826TCONS_00000035-exon-sc0000001-1510915933:953499..953826Clytia hemisphaericaexon
TCONS_00000035-exon-sc0000001-1575043694:953499..953826TCONS_00000035-exon-sc0000001-1575043694:953499..953826Clytia hemisphaericaexon
TCONS_00000035-exon-sc0000001-1491911889:953894..953993TCONS_00000035-exon-sc0000001-1491911889:953894..953993Clytia hemisphaericaexon
TCONS_00000035-exon-sc0000001-1510915933:953894..953993TCONS_00000035-exon-sc0000001-1510915933:953894..953993Clytia hemisphaericaexon
TCONS_00000035-exon-sc0000001-1575043694:953894..953993TCONS_00000035-exon-sc0000001-1575043694:953894..953993Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:937598..953993 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.57527	1.00183	2.55907	2.80713	18.4014	15.5675	15.3215	15.7452	13.8516	11.7958	14.2942	11.4491	7.96726	10.4543	11.0467	11.5485	23.7778	16.2801	6.47975	7.69483	9.67703	9.88372	4.60159	4.90103	15.001	15.2286	8.17045	5.31201	4.38834	2.03547
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000035 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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