TCONS_00000033 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000033
Unique NameTCONS_00000033
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000033 ID=TCONS_00000033|Name=TCONS_00000033|organism=Clytia hemisphaerica|type=transcript|length=2751bp
TAAATCTAAGATTCAATTTATCATTAAAATGGGTTGCAGATGTGACAGTA
ATGCATGTGGATCCTGTGCTTGTTCTAAAGCCAACGAATTATGTACACCC
CAATGTCATGGTGGTCAAAGTATTGATAATGTGCCATGTATGAATACAGA
AGCAGGCAAGaaagtaaaaacaatgaaaatcaaagaTGTCAGAACAGCTC
TGATTGCCAATGGACTTTCAATTATCGGGGATAGAGGTGAATTGTACAAA
CGCTTAGCTGACCAAATCAGAAAATCTGGTGCATCAAACTCCACATCAAA
TGAAAGTGGATCTACATCAGCTTCCGGAAAATCAAACGAAGGGGATGCAA
AGAACGAattattcaaaatcattttGGAAAATGAGGACAACTATCCTTTT
ATTCTATCACTTAGCGGTAAAAAGATCCAAGCCAATTCTGGAAAAGCTGA
ATTACGCAAAGCTTACCTGTTACTGAGCTCTAAAGTGCATCCCGATAAGA
ATCCAGGTAACCAGGAAGCTGTCAAAGCTTTCCAAGCACTTCTATCTGCC
TATGAACGATTAGCGAACCCTGAGAAGTTCGCTGACGAGGACGACGAGGA
CGAGAAGCCAGCTAAAAAGCGACAGAAAACTGAACGATTCACCAGATCTA
ATGGTGGTTGCTTCAAAACCAAAGTCAAGTGTCCTCAATGTAAAACAGAA
TGGGGTTTACCTGTTGTCGGACTAGAGGATTGTGCTTATAATTTCATTAT
GACTGGATTAAAGCAGTATATTTGTCACGTGTGCTCCTGTCAATTTGGTT
GTATGACTGCATTGCATTACTGCCCGCATTGTCGTAAAGAATTTTCGTAT
GATCCGGATGATTATCACCGTAAAATTACTTGTGGCAACATTAAATGTAA
TAAAGAATTTGGTTTTTGGATGTTCAAAGTATCAGAGCGACGCGAAAAGG
AGGTCAGACAGGAGGCTAAGGAGTTACATGAATCACGGTTGAAGAAAGCT
GCTCAGAAGAAGCGTCGTGCTCAAAGGGCCGGTAACCGCGATGCTGGCGA
GGATGGGGCCAGTAAACAGCGTCTTCAGGAACAACTGTTTCTTCTGCAAT
TACGGGATTCGTGTCCTCGATGCGGCTGGGAATTAGAACGCGGAGAAGGC
CATGATGAGGCACAACAGCATTTGACAGAATGTAATGATAAAGTGAAGAT
CCGTGAGTACCAACAAGAGGTCGCGGACGAAGAAGCTGAGGCTAGGTCTA
AGTTAGATGCTAAAGCAAGTGAAGAAGAAATACTTGCATTAAAGCAATGG
GAATCGAACGGGCGCCAATTAGGTCAACTATGGATGCTCAGTGACACAAT
GCTTAAAAGACAATGCGAAACTTTCAATCTTCCAATCAAAGGTAAACGCC
ATGAGTTGATTCAACGATTGTCTCAACATATTCGCTCACAAGCACGCTTG
ATGATCACTGACGGGAAAACGGATGTCTCTGGTGGAGCCTCAGGTTATGA
TGCGTGCAGCTTAAAGCATGCAGATGCTGAAGATCTACCTCAGAATCTGA
ACTCCCTCGATAAGGAGCAATTACAAGATCTGTGTGCAAGTTATGGAGTC
AAGTTCAATCCTCGTAAAGACGTGAAGAAAGATTTGATTAAGAAATTTGA
GATGACGCGTTACAAAGGCACCGAACAACAACTTATGTTGGGATATGgcg
aagagaaaaacaaaagaagagctGCTATTAAAGACAAAGATGAAGACTAT
GTACCAGATGAGTAGGAACTAGTCTCTTGGGACTTGTATTTCCTAAAATA
GTCTTGAACTGCTATCAGCTTAAAATGGGCTCCGGAAAGTGCCTGGTAAT
TCGAGAAAATTGTAATAAGTCAAAGGTTTGAAGACTTGGATTTTAACGTT
GGAAAaccattttttggtattttgaacacggtttaaaaaaatctttatta
gTGAACTTATTCCTGATGAAAACAAGTATTGAGGCAGGAATTGTTacaga
aatattaaaaaaatcttacTAGTTAGAGGATTGAGGCTATGAACTTTATG
CTTCCTTTTGTTTTTATCGTGCTACTATGTACTcagttgttattattatt
attggtaATGGTATCCTTGGTTACCCCGAAAGAGATTCTATGGGAAATAA
CCGTACNGGATGAATAGGAACTAGTCTCTTGggactttttcttttattcc
tTCCATTTCCCTGGAAGATAATCTTGAACTTCTATGAGCTTTTATGAGCT
TTTGATAGTCCCTGGTAGCTGAAGAAAACGAGAAAATTGCAATGAATCAG
AGGTTTTAGGCTTGGATTACAACAAACGAAAAAATTTTccttctgttttg
tttttggtattttgaacACGGTACTAAAAACTTCGTTAATGAACTTATTC
CTGATGAAAACAAGTATTGAGGCAGGAATTGTTACAGAAAGATTAAACAA
ATGTTACTAGTTAGAGAATTGAGGCTATGAACTTTATGCTTCCTTTTGTT
TTTATCGTGCTACTGTGTACTCAGTTGTTATTATTATTGGCAATGGTATC
CTTGGTTACTCCGAAAGAGAGCTTCTATGAAATAACCGGACAAAAATTAT
ACACGtttcaagaaattttattttattttccgtTAAAGCTatttatattt
ttcactttctcattttgattttattgtaaTATATAAGAAAACGATACAAT
CACCTTTTATGTAAACATATCAAGTCCTATCAAGAACTTCATTGATCGAG
C
Run BLAST on NCBI

transcript from alignment at sc0000001:933751..936942+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000033 ID=TCONS_00000033|Name=TCONS_00000033|organism=Clytia hemisphaerica|type=transcript|length=3192bp|location=Sequence derived from alignment at sc0000001:933751..936942+ (Clytia hemisphaerica)
TAAATCTAAGATTCAATTTATCATTAAAATGGGTTGCAGATGTGACAGTA
ATGCATGTGGATCCTGTGCTTGTTCTAAAGCCAACGAATTATGTACACCC
CAATGTCATGGTGGTCAAAGTATTGATAATGTGCCATGTATGAATACAGA
AGCAGGCAAGaaagtaaaaacaatgaaaatcaaagaTGTCAGAACAGCTC
TGATTGCCAATGGACTTTCAATTATCGGGGATAGAGGTGAGGTATtgcta
atttttcaaaatccaaatctATGGAGACAATCTCATTTGAGAGAATTTCG
TTTGCTTATTGTTTGTGTTGTGTAGACAAAACCTTTATTTAGAAGCCTAC
TGAAAAATATACATTCAACCAATAAAGGAGACTCTTATTATTTCATTCTC
AAGGACACATTATTTAGCCAATAAGATTCCAGGTCTGCTATAATGGAGAT
GTTTGAATGTTTGTCTTGCTTTGCTTGCTTTAAAGCACAATGTGTCTTGG
TTATCCACAGATTTGTCTGTAGATTTTCATATTGTATCATATTTTGACGT
AAAGAAAATAGTGTTCCCAAGTTCAACATTTGGTAAAAAACTATTATTAG
tttgttctctttttttatTGCTTCGTACCAAATTCTTTATCAATGGAAAT
GGAAGCCTATGATATTTGACTTTTTAGGTGAATTGTACAAACGCTTAGCT
GACCAAATCAGAAAATCTGGTGCATCAAACTCCACATCAAATGAAAGTGG
ATCTACATCAGCTTCCGGAAAATCAAACGAAGGGGATGCAAAGAACGAat
tattcaaaatcattttGGAAAATGAGGACAACTATCCTTTTATTCTATCA
CTTAGCGGTAAAAAGATCCAAGCCAATTCTGGAAAAGCTGAATTACGCAA
AGCTTACCTGTTACTGAGCTCTAAAGTGCATCCCGATAAGAATCCAGGTA
ACCAGGAAGCTGTCAAAGCTTTCCAAGCACTTCTATCTGCCTATGAACGA
TTAGCGAACCCTGAGAAGTTCGCTGACGAGGACGACGAGGACGAGAAGCC
AGCTAAAAAGCGACAGAAAACTGAACGATTCACCAGATCTAATGGTGGTT
GCTTCAAAACCAAAGTCAAGTGTCCTCAATGTAAAACAGAATGGGGTTTA
CCTGTTGTCGGACTAGAGGATTGTGCTTATAATTTCATTATGACTGGATT
AAAGCAGTATATTTGTCACGTGTGCTCCTGTCAATTTGGTTGTATGACTG
CATTGCATTACTGCCCGCATTGTCGTAAAGAATTTTCGTATGATCCGGAT
GATTATCACCGTAAAATTACTTGTGGCAACATTAAATGTAATAAAGAATT
TGGTTTTTGGATGTTCAAAGTATCAGAGCGACGCGAAAAGGAGGTCAGAC
AGGAGGCTAAGGAGTTACATGAATCACGGTTGAAGAAAGCTGCTCAGAAG
AAGCGTCGTGCTCAAAGGGCCGGTAACCGCGATGCTGGCGAGGATGGGGC
CAGTAAACAGCGTCTTCAGGAACAACTGTTTCTTCTGCAATTACGGGATT
CGTGTCCTCGATGCGGCTGGGAATTAGAACGCGGAGAAGGCCATGATGAG
GCACAACAGCATTTGACAGAATGTAATGATAAAGTGAAGATCCGTGAGTA
CCAACAAGAGGTCGCGGACGAAGAAGCTGAGGCTAGGTCTAAGTTAGATG
CTAAAGCAAGTGAAGAAGAAATACTTGCATTAAAGCAATGGGAATCGAAC
GGGCGCCAATTAGGTCAACTATGGATGCTCAGTGACACAATGCTTAAAAG
ACAATGCGAAACTTTCAATCTTCCAATCAAAGGTAAACGCCATGAGTTGA
TTCAACGATTGTCTCAACATATTCGCTCACAAGCACGCTTGATGATCACT
GACGGGAAAACGGATGTCTCTGGTGGAGCCTCAGGTTATGATGCGTGCAG
CTTAAAGCATGCAGATGCTGAAGATCTACCTCAGAATCTGAACTCCCTCG
ATAAGGAGCAATTACAAGATCTGTGTGCAAGTTATGGAGTCAAGTTCAAT
CCTCGTAAAGACGTGAAGAAAGATTTGATTAAGAAATTTGAGATGACGCG
TTACAAAGGCACCGAACAACAACTTATGTTGGGATATGgcgaagagaaaa
acaaaagaagagctGCTATTAAAGACAAAGATGAAGACTATGTACCAGAT
GAGTAGGAACTAGTCTCTTGGGACTTGTATTTCCTAAAATAGTCTTGAAC
TGCTATCAGCTTAAAATGGGCTCCGGAAAGTGCCTGGTAATTCGAGAAAA
TTGTAATAAGTCAAAGGTTTGAAGACTTGGATTTTAACGTTGGAAAacca
ttttttggtattttgaacacggtttaaaaaaatctttattagTGAACTTA
TTCCTGATGAAAACAAGTATTGAGGCAGGAATTGTTacagaaatattaaa
aaaatcttacTAGTTAGAGGATTGAGGCTATGAACTTTATGCTTCCTTTT
GTTTTTATCGTGCTACTATGTACTcagttgttattattattattggtaAT
GGTATCCTTGGTTACCCCGAAAGAGATTCTATGGGAAATAACCGTACNGG
ATGAATAGGAACTAGTCTCTTGggactttttcttttattcctTCCATTTC
CCTGGAAGATAATCTTGAACTTCTATGAGCTTTTATGAGCTTTTGATAGT
CCCTGGTAGCTGAAGAAAACGAGAAAATTGCAATGAATCAGAGGTTTTAG
GCTTGGATTACAACAAACGAAAAAATTTTccttctgttttgtttttggta
ttttgaacACGGTACTAAAAACTTCGTTAATGAACTTATTCCTGATGAAA
ACAAGTATTGAGGCAGGAATTGTTACAGAAAGATTAAACAAATGTTACTA
GTTAGAGAATTGAGGCTATGAACTTTATGCTTCCTTTTGTTTTTATCGTG
CTACTGTGTACTCAGTTGTTATTATTATTGGCAATGGTATCCTTGGTTAC
TCCGAAAGAGAGCTTCTATGAAATAACCGGACAAAAATTATACACGtttc
aagaaattttattttattttccgtTAAAGCTatttatatttttcactttc
tcattttgattttattgtaaTATATAAGAAAACGATACAATCACCTTTTA
TGTAAACATATCAAGTCCTATCAAGAACTTCATTGATCGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000022XLOC_000022Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000033-exon-sc0000001-1491911889:933751..933986TCONS_00000033-exon-sc0000001-1491911889:933751..933986Clytia hemisphaericaexon
TCONS_00000033-exon-sc0000001-1510915933:933751..933986TCONS_00000033-exon-sc0000001-1510915933:933751..933986Clytia hemisphaericaexon
TCONS_00000033-exon-sc0000001-1575043694:933751..933986TCONS_00000033-exon-sc0000001-1575043694:933751..933986Clytia hemisphaericaexon
TCONS_00000033-exon-sc0000001-1491911889:934428..936942TCONS_00000033-exon-sc0000001-1491911889:934428..936942Clytia hemisphaericaexon
TCONS_00000033-exon-sc0000001-1510915933:934428..936942TCONS_00000033-exon-sc0000001-1510915933:934428..936942Clytia hemisphaericaexon
TCONS_00000033-exon-sc0000001-1575043694:934428..936942TCONS_00000033-exon-sc0000001-1575043694:934428..936942Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:933751..936942 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.3743	12.2105	17.2675	21.7838	14.3964	10.9486	11.9706	12.0763	6.69626	7.03767	5.36716	3.95582	3.09619	2.27297	3.5095	3.71732	7.89349	6.79361	1.62117	2.67859	6.75173	5.56447	11.504	10.7935	5.42924	8.30652	3.4119	3.40635	4.98901	5.35531
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000033 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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