TCONS_00000032 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000032
Unique NameTCONS_00000032
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000032 ID=TCONS_00000032|Name=TCONS_00000032|organism=Clytia hemisphaerica|type=transcript|length=414bp
CAAGATTTTTCCCGCCAAATTGCGTCCCGATTCCAAATCACCCGCCATAT
TGGTCATTAAAACATACCAATTACTTCCATTCTCTACATACACGTGACTA
GGTGATTTATTACCGTATAATTTCTCTTTGGCACGTCTTCGGTTGAAAAT
CCATGCGTGTAAACAACGGCCCAATACGATACAAATTAATCCACCGACCC
AAATAACCAGTGAGATTAGTATAAACATATACCATCGACGTTTTCCGAAT
TCAAGCTCGATTGAAGCGTCGCAGAAGCCGTCTGGAATCGGCGTCGTAGT
GCCATTACCCAATAAAAGTGATGTTCCGTTTGTGTTATCACTAGACATTG
ttataaattttcttaatgacgttgttgaaatttattttcaagatcttttg
ttttaaatttcttc
Run BLAST on NCBI

transcript from alignment at sc0000001:873126..873603+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000032 ID=TCONS_00000032|Name=TCONS_00000032|organism=Clytia hemisphaerica|type=transcript|length=478bp|location=Sequence derived from alignment at sc0000001:873126..873603+ (Clytia hemisphaerica)
CAAGATTTTTCCCGCCAAATTGCGTCCCGATTCCAAATCACCCGCCATAT
TGGTCATTAAAACATACCAATTACTTCCATTCTCTACATACACGTGACTA
GGTGATTTATTACCGTATAATTTCTCTTTGGCACGTCTTCGGTTGAAAAT
CCATGCGTGTAAACAACGGCCCAATACGATACAAATTAATCCACCGACCC
AAATAACCAGTGAGATTAGTATAAACATATACCATCGACGTTTTCCGAAT
TCAAGCTCGATTGAAGCGTCGCAGAAGCCGTCTGGAATCGGCGTCGTAGT
GCCATTACCCAATAAAAGTGATGTTCCGTTTGTGTTATCACTAGACATTG
ttataaattttcttaatgACGTTGNTTAAAAGTGAAGTCCCGTTTGTGCT
ATCACTAGACATTGttataaattttcttaatgacgttgttgaaatttatt
ttcaagatcttttgttttaaatttcttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000021XLOC_000021Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000032-exon-sc0000001-1491911889:873126..873471TCONS_00000032-exon-sc0000001-1491911889:873126..873471Clytia hemisphaericaexon
TCONS_00000032-exon-sc0000001-1510915933:873126..873471TCONS_00000032-exon-sc0000001-1510915933:873126..873471Clytia hemisphaericaexon
TCONS_00000032-exon-sc0000001-1575043694:873126..873471TCONS_00000032-exon-sc0000001-1575043694:873126..873471Clytia hemisphaericaexon
TCONS_00000032-exon-sc0000001-1491911889:873536..873603TCONS_00000032-exon-sc0000001-1491911889:873536..873603Clytia hemisphaericaexon
TCONS_00000032-exon-sc0000001-1510915933:873536..873603TCONS_00000032-exon-sc0000001-1510915933:873536..873603Clytia hemisphaericaexon
TCONS_00000032-exon-sc0000001-1575043694:873536..873603TCONS_00000032-exon-sc0000001-1575043694:873536..873603Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:873126..873603 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.641536	0	0	0.157503	0.623366	0	1.56182	0.771118	1.49711	0	0.881791	1.33778	0.569128	0.333787	1.52048	1.80421	0	2.31731	9.28785	18.4134	3.45764	1.27137	0	3.88925	8.32196	3.06369	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000032 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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