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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000031 ID=TCONS_00000031|Name=TCONS_00000031|organism=Clytia hemisphaerica|type=transcript|length=1451bp
TTTCTCTTATGCTGTATATAAATGTTATGAAAGTAAAACTGgtgtatata
tttttactaatattttgataaaagtcttcaaaaatgtacaaaaatataGA
ATTTATATTCTTTCTATGTTTCTAATGTCAGTCATGCTCAACAATACAGA
TACCGCAAAACACAATTTATCACAACATTAAAAACCATCTAGTAGTTTTC
CGACACTATACGATTACGAATCCCTTAAGGCGGTCTCtgcttgcgcgcgc
tgcgattgtaccttttggcttcaatcaattttgcttgtaaaaaagattac
gtcataaaaatgtagtgcgcgcttgaaaagaaagttgactacatttcaac
ttttttggaacgttacgtcagatcgcgccaatggaattgtttcatttttc
ctttgaccaatagcgtggaagacGCACAAGCGGAGACCAGCCTTTAGACA
AACAAAAATGGACTTTAACACACAACAATGGTCACTCGGTAAAAAAAACG
AAGattcaaaattgtttacattgaAGTACATAAACAAACGAAAAAAACTT
CACACAAGCTTTCTTTTACGCGAAAGCATAACACAATCTTGTATAAAAAT
ACACAAAACGTAAATCGCAGTCTAAAAAGGGTCAACTCTTATTATAATTC
AAGAGAAACACCCGTCGTTTCTCGGTTTTTAGTTGCCGACATTAACATTC
GTATTTCGCATAAGCAAACTTGGCGATGACAtcatttttaaacttaaaac
aTCTTGTTGTTGCGTTTGTTGTTGTTGGTAACCGCCACCACCATTTTGAT
TTACATTCGCTACTCCGCTACCATTTCCCGTTCCACTCATTTGCGGACTG
TTTTgtataaaaaagttttgttgCCCTGGTAACAAATTCGACAAAGCACT
TGTCGGCGACGTAGAATTCGTAAGTCCTTGTATTAAATTTTTCGACGTGG
GCGTGAAGGACATATTCAATCCAAACGAGggattgatttgatttgaatta
TTCCCAGACCCAATATTGCCGCCATTTTGTTGATAAGACGACGGCGAATC
CGATAAAATCCCGACAAAATTATTCGGCCATCCACCGAAATCATTATTCG
ATATATTATTCAAACTATTACCAAGCGACCGTTCGCCATCAAAGGTGGGC
GTAAAACCGGTCACGCCTTGATTATTCAAGTTCTGTAAATTCAACCCATT
TAGCGTATTCCCGTTCACCGCCATCGACGTCATGGCGTTAAGGGCGGCTA
CGTTGTTAGCATATGCGTTTAGAGTCGTTAATCCGTTAATCCCGTTAACA
TTATTTGAAAATTGTCCAAGATTATTGAAGGCACCGAGTGAATTGTTGAT
TTGATTAAGTGCGTTCATGTTGTTTACGTTGACTAGGTTACCGTTGCCAG
GGAACATTGCGCCATATTTATACCATGTGGGTGAAATCTTCTGTGTCAAC
A Run BLAST on NCBI transcript from alignment at sc0000001:816715..818236+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000031 ID=TCONS_00000031|Name=TCONS_00000031|organism=Clytia hemisphaerica|type=transcript|length=1522bp|location=Sequence derived from alignment at sc0000001:816715..818236+ (Clytia hemisphaerica)
TTTCTCTTATGCTGTATATAAATGTTATGAAAGTAAAACTGgtgtatata
tttttactaatattttgataaaagtcttcaaaaatgtacaaaaatataGA
ATTTATATTCTTTCTATGTTTCTAATGTCAGTCATGCTCAACAATACAGA
TACCGCAAAACACAATTTATCACAACATTAAAAACCATCTAGTAGTTTTC
CGACACTATACGATTACGAATCCCTTAAGGCGGTCTCtgcttgcgcgcgc
tgcgattgtaccttttggcttcaatcaattttgcttgtaaaaaagattac
gtcataaaaatgtagtgcgcgcttgaaaagaaagttgactacatttcaac
ttttttggaacgttacgtcagatcgcgccaatggaattgtttcatttttc
ctttgaccaatagcgtggaagacGCACAAGCGGAGACCAGCCTTTAGACA
AACAAAAATGGACTTTAACACACAACAATGGTCACTCGGTAAAAAAAACG
AAGattcaaaattgtttacattgaAGTACATAAACAAACGAAAAAAACTT
CACACAAGCTTTCTTTTACGCGAAAGCATAACACAATCTTGTATAAAAAT
ACACAAAACGTAAATCGCAGTCTAAAAAGGGTCAACTCTTATTATAATTC
AAGAGAAACACCCGTCGTTTCTCGGTTTTTAGTTGCCGACATTAACATTC
GTATTTCGCATAAGCAAACTTGGCGATGACAtcatttttaaacttaaaac
aTCTTGTTGTTGCGTTTGTTGTTGTTGGTAACCGCCACCACCATTTTGAT
TTACATTCGCTACTCCGCTACCATTTCCCGTTCCACTCATTTGCGGACTG
TTTTgtataaaaaagttttgttgCCCTGGTAACAAATTCGACAAAGCACT
TGTCGGCGACGTAGAATTCGTAAGTCCTTGTATTAAATTTTTCGACGTGG
GCGTGAAGGACATATTCAATCCAAACGAGggattgatttgatttgaatta
TTCCCAGACCCAATATTGCCGCCATTTTGTTGATAAGACGACGGCGAATC
CGATAAAATCCCGACAAAATTATTCGGCCATCCACCGAAATCATTATTCG
ATATATTATTCAAACTATTACCAAGCGACCGTTCGCCATCAAAGGTGGGC
GTAAAACCGGTCACGCCTTGATTATTCAAGTTCTGTAAATTCAACCCATT
TAGCGTATTCCCGTTCACCGCCATCGACGTCATGGCGTTAAGGGCGGCTA
CGTTGTTAGCATATGCGTTTAGAGTCGTTAATCCGTTAATCCCGTTAACA
TTATTTGAAAATTGTCCAAGATTATTGAAGGCACCAAGTGAATTGTTGAT
TTGATTAAGTGCGTTCATGTTGTTTACGTTGACTAGGTTACCGTTGCCAN
GGCACCGAGTGAATTGTTGATTTGATTAAGTGCGTTCATGTTGTTTACGT
TGACTAGGTTACCGTTGCCAGGGAACATTGCGCCATATTTATACCATGTG
GGTGAAATCTTCTGTGTCAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000031-exon-sc0000001-1491911889:816715..818044 | TCONS_00000031-exon-sc0000001-1491911889:816715..818044 | Clytia hemisphaerica | exon |
| TCONS_00000031-exon-sc0000001-1510915933:816715..818044 | TCONS_00000031-exon-sc0000001-1510915933:816715..818044 | Clytia hemisphaerica | exon |
| TCONS_00000031-exon-sc0000001-1575043694:816715..818044 | TCONS_00000031-exon-sc0000001-1575043694:816715..818044 | Clytia hemisphaerica | exon |
| TCONS_00000031-exon-sc0000001-1491911889:818116..818236 | TCONS_00000031-exon-sc0000001-1491911889:818116..818236 | Clytia hemisphaerica | exon |
| TCONS_00000031-exon-sc0000001-1510915933:818116..818236 | TCONS_00000031-exon-sc0000001-1510915933:818116..818236 | Clytia hemisphaerica | exon |
| TCONS_00000031-exon-sc0000001-1575043694:818116..818236 | TCONS_00000031-exon-sc0000001-1575043694:818116..818236 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:816715..818236 + |
Blast
The following BLAST results are available for this feature:
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