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TCONS_00000031 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000031
Unique NameTCONS_00000031
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1451

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000031 ID=TCONS_00000031|Name=TCONS_00000031|organism=Clytia hemisphaerica|type=transcript|length=1451bp
TTTCTCTTATGCTGTATATAAATGTTATGAAAGTAAAACTGgtgtatata
tttttactaatattttgataaaagtcttcaaaaatgtacaaaaatataGA
ATTTATATTCTTTCTATGTTTCTAATGTCAGTCATGCTCAACAATACAGA
TACCGCAAAACACAATTTATCACAACATTAAAAACCATCTAGTAGTTTTC
CGACACTATACGATTACGAATCCCTTAAGGCGGTCTCtgcttgcgcgcgc
tgcgattgtaccttttggcttcaatcaattttgcttgtaaaaaagattac
gtcataaaaatgtagtgcgcgcttgaaaagaaagttgactacatttcaac
ttttttggaacgttacgtcagatcgcgccaatggaattgtttcatttttc
ctttgaccaatagcgtggaagacGCACAAGCGGAGACCAGCCTTTAGACA
AACAAAAATGGACTTTAACACACAACAATGGTCACTCGGTAAAAAAAACG
AAGattcaaaattgtttacattgaAGTACATAAACAAACGAAAAAAACTT
CACACAAGCTTTCTTTTACGCGAAAGCATAACACAATCTTGTATAAAAAT
ACACAAAACGTAAATCGCAGTCTAAAAAGGGTCAACTCTTATTATAATTC
AAGAGAAACACCCGTCGTTTCTCGGTTTTTAGTTGCCGACATTAACATTC
GTATTTCGCATAAGCAAACTTGGCGATGACAtcatttttaaacttaaaac
aTCTTGTTGTTGCGTTTGTTGTTGTTGGTAACCGCCACCACCATTTTGAT
TTACATTCGCTACTCCGCTACCATTTCCCGTTCCACTCATTTGCGGACTG
TTTTgtataaaaaagttttgttgCCCTGGTAACAAATTCGACAAAGCACT
TGTCGGCGACGTAGAATTCGTAAGTCCTTGTATTAAATTTTTCGACGTGG
GCGTGAAGGACATATTCAATCCAAACGAGggattgatttgatttgaatta
TTCCCAGACCCAATATTGCCGCCATTTTGTTGATAAGACGACGGCGAATC
CGATAAAATCCCGACAAAATTATTCGGCCATCCACCGAAATCATTATTCG
ATATATTATTCAAACTATTACCAAGCGACCGTTCGCCATCAAAGGTGGGC
GTAAAACCGGTCACGCCTTGATTATTCAAGTTCTGTAAATTCAACCCATT
TAGCGTATTCCCGTTCACCGCCATCGACGTCATGGCGTTAAGGGCGGCTA
CGTTGTTAGCATATGCGTTTAGAGTCGTTAATCCGTTAATCCCGTTAACA
TTATTTGAAAATTGTCCAAGATTATTGAAGGCACCGAGTGAATTGTTGAT
TTGATTAAGTGCGTTCATGTTGTTTACGTTGACTAGGTTACCGTTGCCAG
GGAACATTGCGCCATATTTATACCATGTGGGTGAAATCTTCTGTGTCAAC
A
Run BLAST on NCBI

transcript from alignment at sc0000001:816715..818236+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000031 ID=TCONS_00000031|Name=TCONS_00000031|organism=Clytia hemisphaerica|type=transcript|length=1522bp|location=Sequence derived from alignment at sc0000001:816715..818236+ (Clytia hemisphaerica)
TTTCTCTTATGCTGTATATAAATGTTATGAAAGTAAAACTGgtgtatata tttttactaatattttgataaaagtcttcaaaaatgtacaaaaatataGA ATTTATATTCTTTCTATGTTTCTAATGTCAGTCATGCTCAACAATACAGA TACCGCAAAACACAATTTATCACAACATTAAAAACCATCTAGTAGTTTTC CGACACTATACGATTACGAATCCCTTAAGGCGGTCTCtgcttgcgcgcgc tgcgattgtaccttttggcttcaatcaattttgcttgtaaaaaagattac gtcataaaaatgtagtgcgcgcttgaaaagaaagttgactacatttcaac ttttttggaacgttacgtcagatcgcgccaatggaattgtttcatttttc ctttgaccaatagcgtggaagacGCACAAGCGGAGACCAGCCTTTAGACA AACAAAAATGGACTTTAACACACAACAATGGTCACTCGGTAAAAAAAACG AAGattcaaaattgtttacattgaAGTACATAAACAAACGAAAAAAACTT CACACAAGCTTTCTTTTACGCGAAAGCATAACACAATCTTGTATAAAAAT ACACAAAACGTAAATCGCAGTCTAAAAAGGGTCAACTCTTATTATAATTC AAGAGAAACACCCGTCGTTTCTCGGTTTTTAGTTGCCGACATTAACATTC GTATTTCGCATAAGCAAACTTGGCGATGACAtcatttttaaacttaaaac aTCTTGTTGTTGCGTTTGTTGTTGTTGGTAACCGCCACCACCATTTTGAT TTACATTCGCTACTCCGCTACCATTTCCCGTTCCACTCATTTGCGGACTG TTTTgtataaaaaagttttgttgCCCTGGTAACAAATTCGACAAAGCACT TGTCGGCGACGTAGAATTCGTAAGTCCTTGTATTAAATTTTTCGACGTGG GCGTGAAGGACATATTCAATCCAAACGAGggattgatttgatttgaatta TTCCCAGACCCAATATTGCCGCCATTTTGTTGATAAGACGACGGCGAATC CGATAAAATCCCGACAAAATTATTCGGCCATCCACCGAAATCATTATTCG ATATATTATTCAAACTATTACCAAGCGACCGTTCGCCATCAAAGGTGGGC GTAAAACCGGTCACGCCTTGATTATTCAAGTTCTGTAAATTCAACCCATT TAGCGTATTCCCGTTCACCGCCATCGACGTCATGGCGTTAAGGGCGGCTA CGTTGTTAGCATATGCGTTTAGAGTCGTTAATCCGTTAATCCCGTTAACA TTATTTGAAAATTGTCCAAGATTATTGAAGGCACCAAGTGAATTGTTGAT TTGATTAAGTGCGTTCATGTTGTTTACGTTGACTAGGTTACCGTTGCCAN GGCACCGAGTGAATTGTTGATTTGATTAAGTGCGTTCATGTTGTTTACGT TGACTAGGTTACCGTTGCCAGGGAACATTGCGCCATATTTATACCATGTG GGTGAAATCTTCTGTGTCAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000020XLOC_000020Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000031-exon-sc0000001-1491911889:816715..818044TCONS_00000031-exon-sc0000001-1491911889:816715..818044Clytia hemisphaericaexon
TCONS_00000031-exon-sc0000001-1510915933:816715..818044TCONS_00000031-exon-sc0000001-1510915933:816715..818044Clytia hemisphaericaexon
TCONS_00000031-exon-sc0000001-1575043694:816715..818044TCONS_00000031-exon-sc0000001-1575043694:816715..818044Clytia hemisphaericaexon
TCONS_00000031-exon-sc0000001-1491911889:818116..818236TCONS_00000031-exon-sc0000001-1491911889:818116..818236Clytia hemisphaericaexon
TCONS_00000031-exon-sc0000001-1510915933:818116..818236TCONS_00000031-exon-sc0000001-1510915933:818116..818236Clytia hemisphaericaexon
TCONS_00000031-exon-sc0000001-1575043694:818116..818236TCONS_00000031-exon-sc0000001-1575043694:818116..818236Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:816715..818236 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.129143 0.302844 0.149011 0.163512 0 0.13126 0 0 0.475004 0.628372 1.21188 2.18187 1.87003 0.985021 1.8115 4.67069 2.83498 2.27288 0.0701609 0.0640858 1.36022 1.35922 0.601549 0.767765 0 0 0.1606 0.0457267 0.112192 0.119664
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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