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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000029 ID=TCONS_00000029|Name=TCONS_00000029|organism=Clytia hemisphaerica|type=transcript|length=770bp
ATAAAACTGGCTGGGTAATGTCGACAATTATCGGTCTGtaaattaaaagt
tgttttctaaatattagaaaacgaaagtccATTCTTGACCATTATGAAAT
CTATCAAGAGaagaaaaagtcagaaaaacgcAGTCGCATTAAAGATTTTC
AACTTTAAAAGATTTCATCTGGCATATTTGTTCATATTTTCTATACCTAT
CAACGATGGTGAACGTTCAGAAAGGTGTTTTGATACAATGtgaTCCAACT
GTCAAACAATTTCTTCTCCACATGGACGAAACAAGATCATTGGGTGAAAA
ATTCATTCTCGAAGACATGGATGCAACACATCTTTTTGTATCAGCCAAAG
TTATCAAGACGCTTGAAGCGAAATTATGGGAATTAATGGACAAGTTATCA
TTCCCAGTCGGGGATGGTCAGTAAAAGTTATCatgatttttgaatgtttt
taacaAGAAATATTCACTTGTACGTGTTGGTTGGAATCGAAGAAAAACAA
CTATGTCAACTCCTGTTGTGAATAAACTTTTGTCGAAGCGAATATACGAA
TTGTCGCTAAACCTTTACCACAAAACTATCGATTCTGACCCAAGCATTCC
AGATACAAATTTTGGGTTAACATTTGAAGATTTGAATGAAGACATTTTGT
GGTTAAATTCGACATTTAAATTGATATAGCATAGATCTTATATGGGGGTA
TTTCAAATATAGCTACGTCATAGTCTCAAGTTAAAAGCTTAAACTACTTC
TCTCTACTTTTCTAGTGAAT Run BLAST on NCBI transcript from alignment at sc0000001:766554..770771+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000029 ID=TCONS_00000029|Name=TCONS_00000029|organism=Clytia hemisphaerica|type=transcript|length=4218bp|location=Sequence derived from alignment at sc0000001:766554..770771+ (Clytia hemisphaerica)
ATAAAACTGGCTGGGTAATGTCGACAATTATCGGTCTGtaaattaaaagt
tgttttctaaatattagaaaacgaaagtccATTCTTGACCATTATGAAAT
CTATCAAGAGaagaaaaagtcagaaaaacgcAGTCGCATTAAAGATTTTC
AACTTTAAAAGATTTCATCTGGCATATTTGTTCATATTTTCTATACCTAT
CAACGATGGTGAACGTTCAGAAAGGTGTTTTGATACAATGGTAAGACACC
TCTTCTCGAAATAGATCTTTTGCTTTTATCAGAATGTCGTGGGTGTTCAG
TCAGGGAAATTTTTCTATCTTATattccagacccccgcgctcgataggat
cgatcatcggagcggctcgatgacggatcgatatgtgatcgatggattac
ttatcgatccggataggaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNgatctcctatccggatcgataagtaatccatcgatcacatat
cgatccgtcatcgagccgttccgatgatcgatcctatcgagcgcgggggt
ctggtatATTAAAATTTTGCGTCGCACCACGATTAACTGCAATTACATAC
TTATTGTTGACATGAtatttcaatagacctttttgcctttccatctGCCA
TACCGTAACtaggtctaatgtcaacatccctcctctaatttcgacaccct
ttttatcagagctgaaattgatataaaggttgaaactgtttttctttgct
tgatGGTCAGAGAGGGATTATTCTTTTTCAATAAGTGACTCAAGCTTTCA
TATATTATTCCTctctctaaaaaagggtgtcggaattagacgagggatgt
cgatattagaccaacttacggtattgaattgtatgcaaaaatgaTGGGGG
CTGAATTGCCGTGGCGAGATTGCATTAAAAATATGGCAAAACCTATCAGT
CTAGCAAACCGAGCAAAAAGTTAattcttctttcagaaaaaatactATAA
TTTGTTAATACCtctattcttgcagcttcccaacatccaagctctcaaac
attaGAAGGCAAATGAAATTACTTCGATTTCCCATAGAAATTATGCaatg
aaaaatccgggggtcaataaaccaaccagacggtactaatcgataaactt
gattatcaaagaaattgataaacttgattatcgaagtaatcgataataat
cgaagtaatcgaacaaccatttatcgattaacaatcaaatttgagtacca
aaatttgaaaaaaattgtgagtcttcgatcactttcttaacaacccttcg
aGGAATCGATTACTGTTTgtgagtactttgattgttattgattgttttcg
ataactttgacaacttcgataaccaattgattGCTTCGAAACCAATTACT
Atgatatatctttaagaaaaaccaaaaaaactgacctaaaaccaaagcaa
agaagaCCCGCCATAAAGATTGACCTCCTTAATTCCCAACCATATTGCGC
CCACCATTTTGTGCGCCTTCGCCCTGGCAGTCTAGCAGAATGTTAattct
tctttcagaaaaaagactataatttgtttacctttattcttgcagctttc
catcatccaagctctcaaacatcacaagcggaatgaaattactttcaatt
tcccgtagaaattatgcgatgaaaaatccgggggtcaaagaataaaaact
ttcttttcagcACTAGTTATCTTTGCTTATAacgaattattacttttcaa
tatattttttaaatataatttctGCTTACAAAAATACTTAACATTGtact
gaaagtttgaaaaagttgattctACTTAGTTCTTGTtgaatttaagcgag
tttctattttgcaatttttctacagagacaaataaagattttttctattg
ttcttgcttGATTGCCTCTACTGTAAGGGTAAGTTCCGTAGGAATGAGGC
TATCGAGACATAATGTGACGAATTTGCAGGAAAACTAAATTTAACATTTC
TCTAGGCTGACTATGCGAAAGAAAGTatatattaatataaaacttacatg
catattGCATATAATTGGCAtaattaaagtgtaatcttgtagatgAAAGA
TTAAAAtagcttctcttgaaaactagaGATAATTGAATTCACTCATCTCA
CAGAACAAGGGCtgcttagaacaagcacttgacttcaaaaaaccataaca
ttagacataaactcaagctgaaaaatcaccagcgaaggtaaaaaaaatcC
TTAATCAGCTGACATTGAATTATTGCatatgttttgaatattttccaact
aaatccgcCTACCACGACTTTTTTGTTGCTGtattttgcatacaattcaa
ggcGAAAGGTCTATCTCACTCTTCTTGAAAATCTTCGCTTTTGAAATCTG
CACTTTTTTGTATATTATTCAAGATAAAGGGAGGACTTTATTTAAttaat
aattataataataatcCCCAAATTTATTTCCTCAAAATAAATATATTATA
TAAATATGAAATACTGCACCATGAAAAGGaaagagaaagttttttttcaa
aacattataTTCAAATAGCAGTTGTACAGCAATTAGAATTTTGGAACCAT
GGTTATTATCTTTGAATGGAATCAATGTTAgagtttttggaatttttgaa
agGTTCTTTTAATAGCCATGTCATgtctgttccaaaaaaaatctGCACAT
TTTGATACaatcttaaaagaaaaaagtaacaCCTTATAACGTAATAAAAT
TAcctgaaataaattttgagtggatgattttacctttcagaaaattcgGA
AAATAAGAAGGAAACATTCAGAATTTTTTCTGCTGGGCAAAATTTTTGCT
GTTCTGAACTTCACTGATTTCAGATATGTATTcagaatttttatcatttt
cttggaaatttcAGCCCTCCGAAATAGGCTTTAAGTGCCAAAAGATTGCA
AAATGTAcccaaaaaaactttcataaagttccaaaatattgcaaatcaac
aaaaaagattaaaatcttaactcaattttatttttattcctaTATTTTAT
CAATCCTGGGTTAACTGTTTGTGAGCTGACGGTTATGTCtgagccaaagt
tcgaaaattgaCTTTGCTTTTTGCCCCTTTTCTAAGTATTTTACGATCCT
GTGATGGCCCCAATTTTCAGTAATAATTTTCCAACATTGCTCTTTTTCTT
TTGAGAATTTATCAGTATCACCCTGTGAGGAAGttgctttttgatatttt
gttcttCAGGTCTCGAGAGGATCAACCGTTTCTACCCCCTAGAGATGTTT
CTATTAGTGTAAAAAAGGGATCTTCATGGCTCGCACACAAATAACCCCTA
GATCTTTCGCTCAACTGTTCTTCtcctttttctttcagtgaTCCAACTGT
CAAACAATTTCTTCTCCACATGGACGAAACAAGATCATTGGGTGAAAAAT
TCATTCTCGAAGACATGGATGCAACACATCTTTTTGTATCAGCCAAAGTT
ATCAAGACGCTTGAAGCGAAATTATGGGAATTAATGGACAAGTTATCATT
CCCAGTCGGGGATGGTCAGTAAAAGTTATCatgatttttgaatgttttta
acaAGAAATATTCACTTGTACGTGTTGGTTGGAATCGAAGAAAAACAACT
ATGTCAACTCCTGTTGTGAATAAACTTTTGTCGAAGCGAATATACGAATT
GTCGCTAAACCTTTACCACAAAACTATCGATTCTGACCCAAGCATTCCAG
ATACAAATTTTGGGTTAACATTTGAAGATTTGAATGAAGACATTTTGTGG
TTAAATTCGACATTTAAATTGATATAGCATAGATCTTATATGGGGGTATT
TCAAATATAGCTACGTCATAGTCTCAAGTTAAAAGCTTAAACTACTTCTC
TCTACTTTTCTAGTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000029-exon-sc0000001-1491911889:766554..766793 | TCONS_00000029-exon-sc0000001-1491911889:766554..766793 | Clytia hemisphaerica | exon |
| TCONS_00000029-exon-sc0000001-1510915933:766554..766793 | TCONS_00000029-exon-sc0000001-1510915933:766554..766793 | Clytia hemisphaerica | exon |
| TCONS_00000029-exon-sc0000001-1575043694:766554..766793 | TCONS_00000029-exon-sc0000001-1575043694:766554..766793 | Clytia hemisphaerica | exon |
| TCONS_00000029-exon-sc0000001-1491911889:770242..770771 | TCONS_00000029-exon-sc0000001-1491911889:770242..770771 | Clytia hemisphaerica | exon |
| TCONS_00000029-exon-sc0000001-1510915933:770242..770771 | TCONS_00000029-exon-sc0000001-1510915933:770242..770771 | Clytia hemisphaerica | exon |
| TCONS_00000029-exon-sc0000001-1575043694:770242..770771 | TCONS_00000029-exon-sc0000001-1575043694:770242..770771 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:766554..770771 + |
Blast
BLAST of TCONS_00000029 vs. Swiss-Prot (Human)
Match: TF2H5 (General transcription factor IIH subunit 5 OS=Homo sapiens GN=GTF2H5 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.554e-21 Identity = 37/68 (54.41%), Postives = 57/68 (83.82%), Query Frame = 2
Query: 206 MVNVQKGVLIQCDPTVKQFLLHMDETRSLGEKFILEDMDATHLFVSAKVIKTLEAKLWELMDKLSFPV 409
MVNV KGVLI+CDP +KQFLL++DE+ +LG+KFI++D+D TH+FV A+++ L+ ++ ELMD+ +F +
Sbjct: 1 MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQNAFSL 68
The following BLAST results are available for this feature:
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