TCONS_00000025 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000025
Unique NameTCONS_00000025
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000025 ID=TCONS_00000025|Name=TCONS_00000025|organism=Clytia hemisphaerica|type=transcript|length=355bp
GTCAAGACAAAAACATCAATGATTTTACAACAATCCATCTGAAAAATAAC
CtcagaaatacaaaagaaattgtGTTCGAAACAAAGAGAATTGCCGAAGA
AACATCGTATAGATACAAAAGTCACTTAAATATACCTCCTCCAATATTTC
CACAAGGATGTCAACCGATTTACACCTACTCTATTGAAGAAGCATTAGAT
AAAGCAAGAAAATTGACAAAGGAGGGTATCTTAGTTATTGATCCCAACGT
CTACGTTGATTATGATGAATACGTCAAAAGTCCTGTTGGAGAATGGGTTA
AACAGAAATTGAATACAAGTCAGGTTTCTCCTTATGATTATCTTTTAAAT
GGTGG
Run BLAST on NCBI

protein sequence of TCONS_00000025-protein

>TCONS_00000025-protein ID=TCONS_00000025-protein|Name=TCONS_00000025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
QDKNINDFTTIHLKNNLRNTKEIVFETKRIAEETSYRYKSHLNIPPPIFP
QGCQPIYTYSIEEALDKARKLTKEGILVIDPNVYVDYDEYVKSPVGEWVK
QKLNTSQVSPYDYLLNG
Run BLAST on NCBI

transcript from alignment at sc0000001:645574..645928+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000025 ID=TCONS_00000025|Name=TCONS_00000025|organism=Clytia hemisphaerica|type=transcript|length=355bp|location=Sequence derived from alignment at sc0000001:645574..645928+ (Clytia hemisphaerica)
GTCAAGACAAAAACATCAATGATTTTACAACAATCCATCTGAAAAATAAC
CtcagaaatacaaaagaaattgtGTTCGAAACAAAGAGAATTGCCGAAGA
AACATCGTATAGATACAAAAGTCACTTAAATATACCTCCTCCAATATTTC
CACAAGGATGTCAACCGATTTACACCTACTCTATTGAAGAAGCATTAGAT
AAAGCAAGAAAATTGACAAAGGAGGGTATCTTAGTTATTGATCCCAACGT
CTACGTTGATTATGATGAATACGTCAAAAGTCCTGTTGGAGAATGGGTTA
AACAGAAATTGAATACAAGTCAGGTTTCTCCTTATGATTATCTTTTAAAT
GGTGG

Coding sequence (CDS) from alignment at sc0000001:645574..645928+

>TCONS_00000025 ID=TCONS_00000025|Name=TCONS_00000025|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at sc0000001:645574..645928+ (Clytia hemisphaerica)
CAAGACAAAAACATCAATGATTTTACAACAATCCATCTGAAAAATAACCt
cagaaatacaaaagaaattgtGTTCGAAACAAAGAGAATTGCCGAAGAAA
CATCGTATAGATACAAAAGTCACTTAAATATACCTCCTCCAATATTTCCA
CAAGGATGTCAACCGATTTACACCTACTCTATTGAAGAAGCATTAGATAA
AGCAAGAAAATTGACAAAGGAGGGTATCTTAGTTATTGATCCCAACGTCT
ACGTTGATTATGATGAATACGTCAAAAGTCCTGTTGGAGAATGGGTTAAA
CAGAAATTGAATACAAGTCAGGTTTCTCCTTATGATTATCTTTTAAATGG
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000014XLOC_000014Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000025-proteinTCONS_00000025-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000025-exon-sc0000001-1491911889:645574..645928TCONS_00000025-exon-sc0000001-1491911889:645574..645928Clytia hemisphaericaexon
TCONS_00000025-exon-sc0000001-1510915933:645574..645928TCONS_00000025-exon-sc0000001-1510915933:645574..645928Clytia hemisphaericaexon
TCONS_00000025-exon-sc0000001-1575043694:645574..645928TCONS_00000025-exon-sc0000001-1575043694:645574..645928Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:645574..645928 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.78945	1.21604	0.593093	0.333214	0.352565	0	1.25783	2.23609	1.8614	2.08551	1.52787	1.00596	3.09128	0.671336	1.97876	4.10704	0.547253	0.927729	2.14398	0.651853	1.71177	1.10928	1.56425	2.84355	0.677537	0	1.38668	1.86223	1.52422	2.08326
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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