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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000018 ID=TCONS_00000018|Name=TCONS_00000018|organism=Clytia hemisphaerica|type=transcript|length=2214bp
TATATACATCCAAAAAGGACAAAGGAATTCAGaaataaaaaaacactatg
AAAAACGAAGTTTACCAACCAACAGCCACAGATACACTGACTGGAGATGA
GGAAGGCACTAATCAGCAAGTTCGTTTTGGTGGATTTTCCAGTTTACCCT
TCCTATGGAAAGCAGTTATCGCTGGACTTATTTTGTTGAGTTTCATTCTA
TTGATAGTTGTTATTGTGGTTTCAAGCAAATCATGTCCTGAATGTAATTG
TATGGCTACAACTGCCTCGACACTTTTAAAGACAACACAAGTAGCCAACA
ATACTGCGTCTTGATCAGAAAGATTTTTGTTTAGTGTAATATTTTGGTTA
TGGTGGTGgtttttcatttgatttcttGGAAGTGCACCTTTTGTTTGTAA
ATGGCAGGGGCAGGTCAAACAGTCAAACTGCAATTTTAAGGGGAAAATAA
CCCTTAACGCATTGCCTTTTCCCATATCTTTAGCAAGAAAAGTACATAAC
CTTCATTTTCCAAGGGGGAGTCATTAAAACCACCCATTCAAGTACTATTA
CGAATTTCCTCTGCAGCACAGTGCCGACATTGACTACCCCTGCATTTAAG
AATCAAAATGGTATGCTTATTTCTGGGTTAAAtacttttattttaagttt
gaaTCTGTACCATTAGAAAATTAGGTTTGCGAAGGACTTTGGCTATGGTT
TTTTATGGTTTATAGTGCTGTATTCACGAGAACTTCTAGTTTTTACTTTT
AGAATCTCTTATTTACTGCTAAtataccttttcgaccgtagttgcgcggt
caggtgcgtgccactttattatttaattatacCCCTAATCTCGAtctaat
ccttttttgacacctttttctattgtctagagGTGTgtaaaaaagactgg
gacggttttagggtggtaaaacagacaaaaaaattcctgcgcggcaattg
gcggctacggttaGAAAGGTGTATTTAATAAAGGATAAATGAATTAACAA
CAtttgaatatttaaaacctTATTTTAAACTTTCTGGTGTTTAATGTAGA
TTATATATACTTTAGGGTTTTTATGTTTGCTATTTATATGACTTTTGTTA
TGAGCATTTTATCTTTGATGTGTCATTTTGAATgactgttttttatttta
ttttgtttttacctGGTATTGGTCACCAAGTCACCAAGTTAAAAATTAAA
CTTAAATCTTTCTCAATTATAGGCTGCAGTTGAGACAAAAAATGCTAtaa
ctttttatataatttgaattGAATAGTGGCTTTAagcttgttaaaaagat
attcaagagtAGAATAGTACCAAATAGCaatgaataaataaaattgacaa
aatgaccTATTTAGGAACTGTGCTGTATGTAATCTTAaaataaatgtgaa
aaaattattgaaaaatatttattcaatcaataaataTAGCCATCGACAAA
ACAAAAAGGAGCCAATTTTAAAGTCAACCGCACAGAAGTTTTGCTATCTT
TTTTTtctgaatgaatattttttgagatttttttttcacagtgatttAAC
CCTCTAAGATTGAGAATTTTCTCATATGAAAATGAAGAtcaattctacaa
gaagttgatttttttcaattctcatcttcattttctaatttttcaaaaat
ctcttctattttataatattccactcctgataatcttttcaacaagcgcA
AAACCACCATTTCAtgcgaattctatcaaaagttacagcctcgtttgtct
ccgctgcagattttatctttgttttgaaattacaaaaagaaaatgaagtg
ttttacaatattttattttatttaattgtgTGCCTTAATTCATTTGAATT
AGACTTTTTGTTGATTCGATTTTCTAACACATTTATACCACCTATTGGGA
GTATTTTTAGCATTGCATGataaaatagtttttctttgtatttgatAATG
AACTTTTAGGTATGTAGTTTTATTTGTATAAAATTTAATCTTTATAATTG
CGATtgtattttactttttgaattGATATTTAATTTACTACAATTAATAA
TGCTTtaaatttatatcaaatttcCTTATTGTTTGGTGTGAATAGAGCCT
AAGTTTGCAACGTTGTTAAATCAGTAAGCTATCTAATTTAATTATTGCTT
GGTATGAATAGAGCCTAAGTTTGCAACGTTGTTAAATCAGTAAGCTATCC
AATTTAATTATTGC Run BLAST on NCBI transcript from alignment at sc0000001:455459..460796+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000018 ID=TCONS_00000018|Name=TCONS_00000018|organism=Clytia hemisphaerica|type=transcript|length=5338bp|location=Sequence derived from alignment at sc0000001:455459..460796+ (Clytia hemisphaerica)
TATATACATCCAAAAAGGACAAAGGAATTCAGGTAGGAAAAAGGGACAGA
GCTACacaccatttttttttttaaatgccaTCTGCACAATCtatctttta
ttttcagttttaaggTTTGGTTTGTAGCAGCCATTTTAAGCCATTAGCCT
ACTAACTATCCAGTGCAGGATAGGATTCCCCAGGCAAGCTTGCACCAAAA
TAATGTCAAAATCTGCTCAGCAAGCTTTTTTTAGTCCATGCCAACGACCC
TGCTGCCGATGCGATGCCCCACCCCCAGACTCCGAGGATTTTCTTGTTGC
TTATCTGGGGGTTTTAACATTTTGAGACTTACACCCCAGACTGAATGTGC
AGCCCGCGCGACATACCTAAACGATTATTATAAGGTATTACATAATTTTT
AATGTGCAACTTAAATGattttaaatataaatattatgGCATTCTCGAAA
ACGTCACCGTCACCtctgttcttttgtttttagtgGCTTAGCATGGGTTG
CTCGCATGCAGCAGGGTGCCTGCCCATAGTTACAGTACAGGAGTTTGTGC
AAAAAGCCAAACATCCCAAATCCCCCCATGCCATTATTTCAATTTGAACC
AAATGAAAAAGAGAACTGTTCAATGTTTAGTTtatcagtctgggaaatcc
tctcaattgcacgcttatgttctgaggccgtaagcgcgcaattgcacagt
tatcaaaatggcagaatttttatcgaaattgttctgaaacgggcggtaag
cgttaagcaagATTGACGGGTGGTACGGCTTTTgcggtaagcgtgcaatt
gcacgctttaaaatttcctatatttttgacacgcaattccttccgaaagc
tctgttgaatttcaaaagcctagggcagttttactcaaaatttatcgtag
aagaagattccgtaaaaatggattgcccgttaaatcatgccttcgcccga
attagagaattctgaaccccttgaaatccctaagcaattccaaccggggc
gggagcgggcgtaaattataaccatgcaattgtgcgcttacgccctcgga
acataagcgtgcaattgagaggatttcccagactgtttatcacaccaatt
cttcaaaataaaaatctttatgATTGTAAAGAAAAGGGCTTCATAAAATA
CACCAATCTCGTCGGTAGAGATTTGATTAATGGTCCCATAAATGAGCGtc
aaagcaatcagtagaagaaacCATTTAATTTTAGTTGCAGATTTTCATAT
TAATATACTTCTCATGGGGAATGCTTGTCAATGTGCTGTGTCAATTAATG
TCAGCATTGTATAAGGAGTCCCCCAACGGTTTGCATGAATAGCCATTCTC
ACTTGCATATGAATAAtgcatgaaattttttaattaatatttctgactgc
gtgaattgaaggttcACTGGGGGGTCTTGTATATTGTAAAGTCAAGGGAA
TTTAAAGAAGTATAAACAAGTCGTTCTTGATCCTCTATACTCTAGTCTAG
TCTAAGGTCCCATGCACCTTTCCTGTAATTTGTAAAACTAATGCGTGCAC
GCATTATTTTGCTGCTCTCCACCgattggtctctggaggtaaacaaacct
gtttttgcctgcgttcccttagagaaagttggttttttgagcttatTTTA
GGTTCTGTCAAACAAAATCCCcccaaattttagtatgttcaatctatcca
tgatattataccaccctgaaaatattttgccaaaagaagatcactgtcaa
aagttagaggctcaaatcccaaattttttcaaaatctaataaaaggAGGG
AGCCGAAATTGAACCTCAAAAAAACCCTAACTAAGGTAATTTTAAACTAT
AAACAGACTATTTAGAGCAATTCAGCTTGTGGGTGGCGTGGGTGGCTATG
GGTTTATTCGGGACCTTCAAGTAAGAGTTTTATTCTTAGCTGACAGACAA
TAGTATTTTTGACTCTTTAactttgtttttacattttttctaaagaaata
aaaaaacactatgAAAAACGAAGTTTACCAACCAACAGCCACAGATACAC
TGACTGGAGATGAGGAAGGCACTAATCAGCAAGGTAAGATAATGATTTTT
ACTAGCAGACTATTCAATGAAAGCTAAACTGTTTTTCTAAGAATATCAGT
TTAGAAGCCGACTCATTGTTGAAAAGTCccttcaaataaaaataatttat
ttacaaATGGCAATGTCCCTTTTTAATCTTTGGAATTGAATTTCACTGTG
TAAATTACTAGGAAAACTTACATTTTTCTTATATATAAGCATCACtttta
taggaaacaaataaattaatttatttctaaGTGGTTGGAATCAGCTTACT
GATTTTCagatatatttttgttttaatttctttcgCCTACTGTATTACTG
CCTGATAgggatcaaaaattgttttatttctgtactcttaggttccaaat
aaacgccccctccccAGTTTGTtaattccaacccccctccTGGACCTTAT
TGGGATCCaccgtttattttaattttaaggaCATTTTCAGATGtgaaaga
gaaggccccttattctactctaaatagcctgattttagcctatatttata
CCTTATTATTGGTTTCTCAGAAGTACAATTGCCAACCCTCCCGGCAATTA
CatgtgttttttttgtaagcatacaaaaatccgaaagcTGGCTCGGAATG
CTTAGATCGAGagatttacaaagctgaaaaatgcattgagggatgcttat
aatatcctaagcaaaattttagagaatttcgaaaatccgtaaaattccag
tcAAAAAGAAACAAATTCTGAGTATGAAGGCTCAAGGTAAtgtttagcat
atgcttaaatttttgccatatctgagcctagataNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNccccccccccccccgtttatttggaacctaagagtatccAGGAGAGTA
TCTGTATTGATAAAATCAATTTGTTGTCACTTTCTAAATTTCAGTTCGTT
TTGGTGGATTTTCCAGTTTACCCTTCCTATGGAAAGCAGTTATCGCTGGA
CTTATTTTGTTGAGTTTCATTCTATTGATAGTTGTTATTGTGGTTTCAAG
CAAATCATGTCCTGAATGTAATTGTATGGCTACAACTGCCTCGACACTTT
TAAAGACAACACAAGTAGCCAACAATACTGCGTCTTGATCAGAAAGATTT
TTGTTTAGTGTAATATTTTGGTTATGGTGGTGgtttttcatttgatttct
tGGAAGTGCACCTTTTGTTTGTAAATGGCAGGGGCAGGTCAAACAGTCAA
ACTGCAATTTTAAGGGGAAAATAACCCTTAACGCATTGCCTTTTCCCATA
TCTTTAGCAAGAAAAGTACATAACCTTCATTTTCCAAGGGGGAGTCATTA
AAACCACCCATTCAAGTACTATTACGAATTTCCTCTGCAGCACAGTGCCG
ACATTGACTACCCCTGCATTTAAGAATCAAAATGGTATGCTTATTTCTGG
GTTAAAtacttttattttaagtttgaaTCTGTACCATTAGAAAATTAGGT
TTGCGAAGGACTTTGGCTATGGTTTTTTATGGTTTATAGTGCTGTATTCA
CGAGAACTTCTAGTTTTTACTTTTAGAATCTCTTATTTACTGCTAAtata
ccttttcgaccgtagttgcgcggtcaggtgcgtgccactttattatttaa
ttatacCCCTAATCTCGAtctaatccttttttgacacctttttctattgt
ctagagGTGTgtaaaaaagactgggacggttttagggtggtaaaacagac
aaaaaaattcctgcgcggcaattggcggctacggttaGAAAGGTGTATTT
AATAAAGGATAAATGAATTAACAACAtttgaatatttaaaacctTATTTT
AAACTTTCTGGTGTTTAATGTAGATTATATATACTTTAGGGTTTTTATGT
TTGCTATTTATATGACTTTTGTTATGAGCATTTTATCTTTGATGTGTCAT
TTTGAATgactgttttttattttattttgtttttacctGGTATTGGTCAC
CAAGTCACCAAGTTAAAAATTAAACTTAAATCTTTCTCAATTATAGGCTG
CAGTTGAGACAAAAAATGCTAtaactttttatataatttgaattGAATAG
TGGCTTTAagcttgttaaaaagatattcaagagtAGAATAGTACCAAATA
GCaatgaataaataaaattgacaaaatgaccTATTTAGGAACTGTGCTGT
ATGTAATCTTAaaataaatgtgaaaaaattattgaaaaatatttattcaa
tcaataaataTAGCCATCGACAAAACAAAAAGGAGCCAATTTTAAAGTCA
ACCGCACAGAAGTTTTGCTATCTTTTTTTtctgaatgaatattttttgag
atttttttttcacagtgatttAACCCTCTAAGATTGAGAATTTTCTCATA
TGAAAATGAAGAtcaattctacaagaagttgatttttttcaattctcatc
ttcattttctaatttttcaaaaatctcttctattttataatattccactc
ctgataatcttttcaacaagcgcAAAACCACCATTTCAtgcgaattctat
caaaagttacagcctcgtttgtctccgctgcagattttatctttgttttg
aaattacaaaaagaaaatgaagtgttttacaatattttattttatttaat
tgtgTGCCTTAATTCATTTGAATTAGACTTTTTGTTGATTCGATTTTCTA
ACACATTTATACCACCTATTGGGAGTATTTTTAGCATTGCATGataaaat
agtttttctttgtatttgatAATGAACTTTTAGGTATGTAGTTTTATTTG
TATAAAATTTAATCTTTATAATTGCGATtgtattttactttttgaattGA
TATTTAATTTACTACAATTAATAATGCTTtaaatttatatcaaatttcCT
TATTGTTTGGTGTGAATAGAGCCTAAGTTTGCAACGTTGTTAAATCAGTA
AGCTATCTAATTTAATTATTGCTTGGTATGAATAGAGCCTAAGTTTGCAA
CGTTGTTAAATCAGTAAGCTATCCAATTTAATTATTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000018-exon-sc0000001-1491911889:455459..455490 | TCONS_00000018-exon-sc0000001-1491911889:455459..455490 | Clytia hemisphaerica | exon |
| TCONS_00000018-exon-sc0000001-1510915933:455459..455490 | TCONS_00000018-exon-sc0000001-1510915933:455459..455490 | Clytia hemisphaerica | exon |
| TCONS_00000018-exon-sc0000001-1575043694:455459..455490 | TCONS_00000018-exon-sc0000001-1575043694:455459..455490 | Clytia hemisphaerica | exon |
| TCONS_00000018-exon-sc0000001-1491911889:457454..457541 | TCONS_00000018-exon-sc0000001-1491911889:457454..457541 | Clytia hemisphaerica | exon |
| TCONS_00000018-exon-sc0000001-1510915933:457454..457541 | TCONS_00000018-exon-sc0000001-1510915933:457454..457541 | Clytia hemisphaerica | exon |
| TCONS_00000018-exon-sc0000001-1575043694:457454..457541 | TCONS_00000018-exon-sc0000001-1575043694:457454..457541 | Clytia hemisphaerica | exon |
| TCONS_00000018-exon-sc0000001-1491911889:458703..460796 | TCONS_00000018-exon-sc0000001-1491911889:458703..460796 | Clytia hemisphaerica | exon |
| TCONS_00000018-exon-sc0000001-1510915933:458703..460796 | TCONS_00000018-exon-sc0000001-1510915933:458703..460796 | Clytia hemisphaerica | exon |
| TCONS_00000018-exon-sc0000001-1575043694:458703..460796 | TCONS_00000018-exon-sc0000001-1575043694:458703..460796 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:455459..460796 + |
Blast
The following BLAST results are available for this feature:
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