TCONS_00000018 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000018
Unique NameTCONS_00000018
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2214

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000018 ID=TCONS_00000018|Name=TCONS_00000018|organism=Clytia hemisphaerica|type=transcript|length=2214bp
TATATACATCCAAAAAGGACAAAGGAATTCAGaaataaaaaaacactatg
AAAAACGAAGTTTACCAACCAACAGCCACAGATACACTGACTGGAGATGA
GGAAGGCACTAATCAGCAAGTTCGTTTTGGTGGATTTTCCAGTTTACCCT
TCCTATGGAAAGCAGTTATCGCTGGACTTATTTTGTTGAGTTTCATTCTA
TTGATAGTTGTTATTGTGGTTTCAAGCAAATCATGTCCTGAATGTAATTG
TATGGCTACAACTGCCTCGACACTTTTAAAGACAACACAAGTAGCCAACA
ATACTGCGTCTTGATCAGAAAGATTTTTGTTTAGTGTAATATTTTGGTTA
TGGTGGTGgtttttcatttgatttcttGGAAGTGCACCTTTTGTTTGTAA
ATGGCAGGGGCAGGTCAAACAGTCAAACTGCAATTTTAAGGGGAAAATAA
CCCTTAACGCATTGCCTTTTCCCATATCTTTAGCAAGAAAAGTACATAAC
CTTCATTTTCCAAGGGGGAGTCATTAAAACCACCCATTCAAGTACTATTA
CGAATTTCCTCTGCAGCACAGTGCCGACATTGACTACCCCTGCATTTAAG
AATCAAAATGGTATGCTTATTTCTGGGTTAAAtacttttattttaagttt
gaaTCTGTACCATTAGAAAATTAGGTTTGCGAAGGACTTTGGCTATGGTT
TTTTATGGTTTATAGTGCTGTATTCACGAGAACTTCTAGTTTTTACTTTT
AGAATCTCTTATTTACTGCTAAtataccttttcgaccgtagttgcgcggt
caggtgcgtgccactttattatttaattatacCCCTAATCTCGAtctaat
ccttttttgacacctttttctattgtctagagGTGTgtaaaaaagactgg
gacggttttagggtggtaaaacagacaaaaaaattcctgcgcggcaattg
gcggctacggttaGAAAGGTGTATTTAATAAAGGATAAATGAATTAACAA
CAtttgaatatttaaaacctTATTTTAAACTTTCTGGTGTTTAATGTAGA
TTATATATACTTTAGGGTTTTTATGTTTGCTATTTATATGACTTTTGTTA
TGAGCATTTTATCTTTGATGTGTCATTTTGAATgactgttttttatttta
ttttgtttttacctGGTATTGGTCACCAAGTCACCAAGTTAAAAATTAAA
CTTAAATCTTTCTCAATTATAGGCTGCAGTTGAGACAAAAAATGCTAtaa
ctttttatataatttgaattGAATAGTGGCTTTAagcttgttaaaaagat
attcaagagtAGAATAGTACCAAATAGCaatgaataaataaaattgacaa
aatgaccTATTTAGGAACTGTGCTGTATGTAATCTTAaaataaatgtgaa
aaaattattgaaaaatatttattcaatcaataaataTAGCCATCGACAAA
ACAAAAAGGAGCCAATTTTAAAGTCAACCGCACAGAAGTTTTGCTATCTT
TTTTTtctgaatgaatattttttgagatttttttttcacagtgatttAAC
CCTCTAAGATTGAGAATTTTCTCATATGAAAATGAAGAtcaattctacaa
gaagttgatttttttcaattctcatcttcattttctaatttttcaaaaat
ctcttctattttataatattccactcctgataatcttttcaacaagcgcA
AAACCACCATTTCAtgcgaattctatcaaaagttacagcctcgtttgtct
ccgctgcagattttatctttgttttgaaattacaaaaagaaaatgaagtg
ttttacaatattttattttatttaattgtgTGCCTTAATTCATTTGAATT
AGACTTTTTGTTGATTCGATTTTCTAACACATTTATACCACCTATTGGGA
GTATTTTTAGCATTGCATGataaaatagtttttctttgtatttgatAATG
AACTTTTAGGTATGTAGTTTTATTTGTATAAAATTTAATCTTTATAATTG
CGATtgtattttactttttgaattGATATTTAATTTACTACAATTAATAA
TGCTTtaaatttatatcaaatttcCTTATTGTTTGGTGTGAATAGAGCCT
AAGTTTGCAACGTTGTTAAATCAGTAAGCTATCTAATTTAATTATTGCTT
GGTATGAATAGAGCCTAAGTTTGCAACGTTGTTAAATCAGTAAGCTATCC
AATTTAATTATTGC
Run BLAST on NCBI

transcript from alignment at sc0000001:455459..460796+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000018 ID=TCONS_00000018|Name=TCONS_00000018|organism=Clytia hemisphaerica|type=transcript|length=5338bp|location=Sequence derived from alignment at sc0000001:455459..460796+ (Clytia hemisphaerica)
TATATACATCCAAAAAGGACAAAGGAATTCAGGTAGGAAAAAGGGACAGA GCTACacaccatttttttttttaaatgccaTCTGCACAATCtatctttta ttttcagttttaaggTTTGGTTTGTAGCAGCCATTTTAAGCCATTAGCCT ACTAACTATCCAGTGCAGGATAGGATTCCCCAGGCAAGCTTGCACCAAAA TAATGTCAAAATCTGCTCAGCAAGCTTTTTTTAGTCCATGCCAACGACCC TGCTGCCGATGCGATGCCCCACCCCCAGACTCCGAGGATTTTCTTGTTGC TTATCTGGGGGTTTTAACATTTTGAGACTTACACCCCAGACTGAATGTGC AGCCCGCGCGACATACCTAAACGATTATTATAAGGTATTACATAATTTTT AATGTGCAACTTAAATGattttaaatataaatattatgGCATTCTCGAAA ACGTCACCGTCACCtctgttcttttgtttttagtgGCTTAGCATGGGTTG CTCGCATGCAGCAGGGTGCCTGCCCATAGTTACAGTACAGGAGTTTGTGC AAAAAGCCAAACATCCCAAATCCCCCCATGCCATTATTTCAATTTGAACC AAATGAAAAAGAGAACTGTTCAATGTTTAGTTtatcagtctgggaaatcc tctcaattgcacgcttatgttctgaggccgtaagcgcgcaattgcacagt tatcaaaatggcagaatttttatcgaaattgttctgaaacgggcggtaag cgttaagcaagATTGACGGGTGGTACGGCTTTTgcggtaagcgtgcaatt gcacgctttaaaatttcctatatttttgacacgcaattccttccgaaagc tctgttgaatttcaaaagcctagggcagttttactcaaaatttatcgtag aagaagattccgtaaaaatggattgcccgttaaatcatgccttcgcccga attagagaattctgaaccccttgaaatccctaagcaattccaaccggggc gggagcgggcgtaaattataaccatgcaattgtgcgcttacgccctcgga acataagcgtgcaattgagaggatttcccagactgtttatcacaccaatt cttcaaaataaaaatctttatgATTGTAAAGAAAAGGGCTTCATAAAATA CACCAATCTCGTCGGTAGAGATTTGATTAATGGTCCCATAAATGAGCGtc aaagcaatcagtagaagaaacCATTTAATTTTAGTTGCAGATTTTCATAT TAATATACTTCTCATGGGGAATGCTTGTCAATGTGCTGTGTCAATTAATG TCAGCATTGTATAAGGAGTCCCCCAACGGTTTGCATGAATAGCCATTCTC ACTTGCATATGAATAAtgcatgaaattttttaattaatatttctgactgc gtgaattgaaggttcACTGGGGGGTCTTGTATATTGTAAAGTCAAGGGAA TTTAAAGAAGTATAAACAAGTCGTTCTTGATCCTCTATACTCTAGTCTAG TCTAAGGTCCCATGCACCTTTCCTGTAATTTGTAAAACTAATGCGTGCAC GCATTATTTTGCTGCTCTCCACCgattggtctctggaggtaaacaaacct gtttttgcctgcgttcccttagagaaagttggttttttgagcttatTTTA GGTTCTGTCAAACAAAATCCCcccaaattttagtatgttcaatctatcca tgatattataccaccctgaaaatattttgccaaaagaagatcactgtcaa aagttagaggctcaaatcccaaattttttcaaaatctaataaaaggAGGG AGCCGAAATTGAACCTCAAAAAAACCCTAACTAAGGTAATTTTAAACTAT AAACAGACTATTTAGAGCAATTCAGCTTGTGGGTGGCGTGGGTGGCTATG GGTTTATTCGGGACCTTCAAGTAAGAGTTTTATTCTTAGCTGACAGACAA TAGTATTTTTGACTCTTTAactttgtttttacattttttctaaagaaata aaaaaacactatgAAAAACGAAGTTTACCAACCAACAGCCACAGATACAC TGACTGGAGATGAGGAAGGCACTAATCAGCAAGGTAAGATAATGATTTTT ACTAGCAGACTATTCAATGAAAGCTAAACTGTTTTTCTAAGAATATCAGT TTAGAAGCCGACTCATTGTTGAAAAGTCccttcaaataaaaataatttat ttacaaATGGCAATGTCCCTTTTTAATCTTTGGAATTGAATTTCACTGTG TAAATTACTAGGAAAACTTACATTTTTCTTATATATAAGCATCACtttta taggaaacaaataaattaatttatttctaaGTGGTTGGAATCAGCTTACT GATTTTCagatatatttttgttttaatttctttcgCCTACTGTATTACTG CCTGATAgggatcaaaaattgttttatttctgtactcttaggttccaaat aaacgccccctccccAGTTTGTtaattccaacccccctccTGGACCTTAT TGGGATCCaccgtttattttaattttaaggaCATTTTCAGATGtgaaaga gaaggccccttattctactctaaatagcctgattttagcctatatttata CCTTATTATTGGTTTCTCAGAAGTACAATTGCCAACCCTCCCGGCAATTA CatgtgttttttttgtaagcatacaaaaatccgaaagcTGGCTCGGAATG CTTAGATCGAGagatttacaaagctgaaaaatgcattgagggatgcttat aatatcctaagcaaaattttagagaatttcgaaaatccgtaaaattccag tcAAAAAGAAACAAATTCTGAGTATGAAGGCTCAAGGTAAtgtttagcat atgcttaaatttttgccatatctgagcctagataNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNccccccccccccccgtttatttggaacctaagagtatccAGGAGAGTA TCTGTATTGATAAAATCAATTTGTTGTCACTTTCTAAATTTCAGTTCGTT TTGGTGGATTTTCCAGTTTACCCTTCCTATGGAAAGCAGTTATCGCTGGA CTTATTTTGTTGAGTTTCATTCTATTGATAGTTGTTATTGTGGTTTCAAG CAAATCATGTCCTGAATGTAATTGTATGGCTACAACTGCCTCGACACTTT TAAAGACAACACAAGTAGCCAACAATACTGCGTCTTGATCAGAAAGATTT TTGTTTAGTGTAATATTTTGGTTATGGTGGTGgtttttcatttgatttct tGGAAGTGCACCTTTTGTTTGTAAATGGCAGGGGCAGGTCAAACAGTCAA ACTGCAATTTTAAGGGGAAAATAACCCTTAACGCATTGCCTTTTCCCATA TCTTTAGCAAGAAAAGTACATAACCTTCATTTTCCAAGGGGGAGTCATTA AAACCACCCATTCAAGTACTATTACGAATTTCCTCTGCAGCACAGTGCCG ACATTGACTACCCCTGCATTTAAGAATCAAAATGGTATGCTTATTTCTGG GTTAAAtacttttattttaagtttgaaTCTGTACCATTAGAAAATTAGGT TTGCGAAGGACTTTGGCTATGGTTTTTTATGGTTTATAGTGCTGTATTCA CGAGAACTTCTAGTTTTTACTTTTAGAATCTCTTATTTACTGCTAAtata ccttttcgaccgtagttgcgcggtcaggtgcgtgccactttattatttaa ttatacCCCTAATCTCGAtctaatccttttttgacacctttttctattgt ctagagGTGTgtaaaaaagactgggacggttttagggtggtaaaacagac aaaaaaattcctgcgcggcaattggcggctacggttaGAAAGGTGTATTT AATAAAGGATAAATGAATTAACAACAtttgaatatttaaaacctTATTTT AAACTTTCTGGTGTTTAATGTAGATTATATATACTTTAGGGTTTTTATGT TTGCTATTTATATGACTTTTGTTATGAGCATTTTATCTTTGATGTGTCAT TTTGAATgactgttttttattttattttgtttttacctGGTATTGGTCAC CAAGTCACCAAGTTAAAAATTAAACTTAAATCTTTCTCAATTATAGGCTG CAGTTGAGACAAAAAATGCTAtaactttttatataatttgaattGAATAG TGGCTTTAagcttgttaaaaagatattcaagagtAGAATAGTACCAAATA GCaatgaataaataaaattgacaaaatgaccTATTTAGGAACTGTGCTGT ATGTAATCTTAaaataaatgtgaaaaaattattgaaaaatatttattcaa tcaataaataTAGCCATCGACAAAACAAAAAGGAGCCAATTTTAAAGTCA ACCGCACAGAAGTTTTGCTATCTTTTTTTtctgaatgaatattttttgag atttttttttcacagtgatttAACCCTCTAAGATTGAGAATTTTCTCATA TGAAAATGAAGAtcaattctacaagaagttgatttttttcaattctcatc ttcattttctaatttttcaaaaatctcttctattttataatattccactc ctgataatcttttcaacaagcgcAAAACCACCATTTCAtgcgaattctat caaaagttacagcctcgtttgtctccgctgcagattttatctttgttttg aaattacaaaaagaaaatgaagtgttttacaatattttattttatttaat tgtgTGCCTTAATTCATTTGAATTAGACTTTTTGTTGATTCGATTTTCTA ACACATTTATACCACCTATTGGGAGTATTTTTAGCATTGCATGataaaat agtttttctttgtatttgatAATGAACTTTTAGGTATGTAGTTTTATTTG TATAAAATTTAATCTTTATAATTGCGATtgtattttactttttgaattGA TATTTAATTTACTACAATTAATAATGCTTtaaatttatatcaaatttcCT TATTGTTTGGTGTGAATAGAGCCTAAGTTTGCAACGTTGTTAAATCAGTA AGCTATCTAATTTAATTATTGCTTGGTATGAATAGAGCCTAAGTTTGCAA CGTTGTTAAATCAGTAAGCTATCCAATTTAATTATTGC
Related Sequences
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000010XLOC_000010Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000018-exon-sc0000001-1491911889:455459..455490TCONS_00000018-exon-sc0000001-1491911889:455459..455490Clytia hemisphaericaexon
TCONS_00000018-exon-sc0000001-1510915933:455459..455490TCONS_00000018-exon-sc0000001-1510915933:455459..455490Clytia hemisphaericaexon
TCONS_00000018-exon-sc0000001-1491911889:457454..457541TCONS_00000018-exon-sc0000001-1491911889:457454..457541Clytia hemisphaericaexon
TCONS_00000018-exon-sc0000001-1510915933:457454..457541TCONS_00000018-exon-sc0000001-1510915933:457454..457541Clytia hemisphaericaexon
TCONS_00000018-exon-sc0000001-1491911889:458703..460796TCONS_00000018-exon-sc0000001-1491911889:458703..460796Clytia hemisphaericaexon
TCONS_00000018-exon-sc0000001-1510915933:458703..460796TCONS_00000018-exon-sc0000001-1510915933:458703..460796Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:455459..460796 +
Expression

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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.957071 0.985674 0.732997 0.980869 51.9244 37.815 42.7908 43.9052 33.7457 30.5483 21.5412 22.2243 8.0039 6.1497 7.89688 6.99877 9.74506 9.06141 5.38491 6.17456 9.84975 9.81162 4.74222 6.07972 6.04631 8.40559 9.93402 6.55933 7.79706 6.24977
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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