TCONS_00000017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000017
Unique NameTCONS_00000017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1129

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000017 ID=TCONS_00000017|Name=TCONS_00000017|organism=Clytia hemisphaerica|type=transcript|length=1129bp
aaattttttaaagttctcagaagactccagtggtgtatatcatgaataga
ttttaAAAATCCCAATCAGCCTAAAGTAGAAATTTGTCTCGTTTATTGTA
TTTTCTTATCATCTAGCAGATTATTCAATcaataataatttttaaaaaga
tcATGGAAAAGAAAGAACATTTGTACAAGATTTTGGTCATTGGAGACTTG
GGAACAGGAAAGACCAGTATAATCAAACGTTATGTTCACAATTTCTTCTC
AGTTCACTACAGGGCAACTATTGGTGTTGATTTTGCTTTGAAAGTGTTGA
ATTGGGATGACAAAACATTGATACGTCTACAGCTATGGGATATAGCagGA
CAAGAACGTTTTGGAAACATGACAAGGGTGTATTACAAAGAAGCCGTAGG
ATGTTTCATCGTGTTCGATGTAACGAGACAATCAACATTCGAAGCAGTCT
CTAAATGGAAGAACGATCTCGATACTAAAGTTCAACTTCCTGATGGAAAA
CCAATCCCATGTTTATTATTAGCTAACAAATGTGATCAACCGAAAGAAGG
GTTAGTCAATAAGCCATCAGATATGGATAAATTTTGTGAAGAGAAAGGGT
TCATTGGTTGGTACGAGACAAGTGCCAAAGAAAACATAAATATCGATGAA
GCTTCGAAATTCCTTGTTCAAAAGATTCTAGAGAACGATCGAGCCAACAA
TCTGACAAGTCCAGACATCGATGATGATAAAATTGACCTGAGGAAGAAGC
CTGTTGATGTCGTCACGCAGCAAGAACGCTCGGGCTGCTGCTAAACTTTT
AAACGAAATCACATTTAATGCcagttatatttttttttcaaaattaaaag
gtaataatatttttgtgcttttgaatttttttaatagaattctttattta
cattttgttttgtttttgttgacaACAATCTAACTTTGGGTATCTATGTC
GTCAGGACTAGCTCAGTAAAAATTTCACGGAATTTGAATTTGCCATGTTT
TGACAGAATATTACACAAGTAAggtcagtagcgtagacaagagggtGCAC
AACAtagtatgaacccccccccttttttaagggggggggatccgagtttt
caaggaaggctttataggggggatgggca
Run BLAST on NCBI

protein sequence of TCONS_00000017-protein

>TCONS_00000017-protein ID=TCONS_00000017-protein|Name=TCONS_00000017-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
MEKKEHLYKILVIGDLGTGKTSIIKRYVHNFFSVHYRATIGVDFALKVLN
WDDKTLIRLQLWDIAGQERFGNMTRVYYKEAVGCFIVFDVTRQSTFEAVS
KWKNDLDTKVQLPDGKPIPCLLLANKCDQPKEGLVNKPSDMDKFCEEKGF
IGWYETSAKENINIDEASKFLVQKILENDRANNLTSPDIDDDKIDLRKKP
VDVVTQQERSGCC
Run BLAST on NCBI

transcript from alignment at sc0000001:359692..372295+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000017 ID=TCONS_00000017|Name=TCONS_00000017|organism=Clytia hemisphaerica|type=transcript|length=12604bp|location=Sequence derived from alignment at sc0000001:359692..372295+ (Clytia hemisphaerica)
aaattttttaaagttctcagaagactccagtggtgtatatcatgaataga
ttttaAAAATCCCAATCAGCCTAAAGTAGAAATTTGTCTCGTTTATTGTA
TTTTCTTATCATCTAGCAGATTATTCAATcaataataatttttaaaaaga
tcATGGAAAAGAAAGAACATTTGTACAAGATTTTGGTCATTGGAGACTTG
GGAACAGGAAAGACCAGTATAATCAAACGTTATGTTCACAATTTCTTCTC
AGTTCACTACAGGGCAACTGTAAGTTCATTTCATTCTGTTTAATTTTGGA
TATATACATTatataaaggaagaaattttggcgggaagaaaatttgacGG
ATTTGGATTTGGTGGATTTTGTCGAaacccgccaaattaagttccagCCA
AAAGTTACTTTTTCCACCATccatcaaattaaattcctgccaaatttaaG
TCTTCTCATTTTTTCGTTTCGATTTTTCACTATTTAGGCCCTAAATGGga
gtattttcaacattttcacaCTGATTGTAAACCTTGAAACTCATTAATTT
CATTGCCAATCCGCTAAACTAAATttcctctaaaaaactttttcggtcat
ccgccaaattaaattccggccaaaatttcttcctttaatatACTTTCctt
aataaatttatttttgctgttaATTGGAACAACTTGGGAAAGAACAGATT
AACTTTcgaaagatttgaattttttataaatcaaaataaTGAGTGAATTT
CAAAGACCTTTTTGTAGAGCAAAATTCCTCCACCTTTCCTGATTGTGATA
GAGGAATCTCTAGAAACATAGTGGCCCTACCTGTCCTACCCTTTAATTTC
CACTGGAGCAAAGAAAATATGAGGGGTTTTGTATAATTGGTcgaaaatga
tcagaaaacattAATTCAACTTTTAAGAAATTCAACTCAAAGAAGGTTTT
TAAGATGTTGACAGTGTCGAAATAGTCTAATTTAAAGAatttatattcaa
aacaaaaacttggTTCAATAAAAATGGTGTACATAGGATTTCCGAGTCCT
CCATCCAAACTTACTAAATTTCATGATCAAATGAgtaaataaaacaaata
tacaggtacgagccgggaagtatcttatccatttggtggactaactttct
tggggtttttcttgttccttatggtaataagaatattttaagcttctggg
ccacctggatttctcacctgggtatccataatggcggatttttggtcatg
tgacccccgtacgcaaaactgaaaattcgtccaacccaaatataggcata
tcatatatcaatcgatcggaaatttgatactgattaattttgagatgcaa
agttgggtctgaaaactttcctatctcgagatataaatcactttcgtttt
ctcaggtttggctgcagttgtaggcTTTCATGGAGTtaggcaattctttt
agtcatatctcaagaaatatgctttaaaacatatcaaaactttatgtgct
cctagaaaaggcattaaaaattgtttatgcaaattttcaaaaattttgca
gaaaaaatgtGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNcataaaattttgatgaaattagtcTGGCTTTGAGA
CCACTAAGCCATGATAGCTTTGTATGCGCCAGACGTCagactttgaatta
ttttcctaaaaaagaacaaagtcccaaagtttttatttcttgcaaGCTTG
CTAGACACTAGCACAGATTTGTCGCACAGTCACTGAACGGGCCTGTAGAG
TTTCTGTCCACCCTACGACcatcacatggtatgggttggcCCTAGCAAAG
TAgcatttacttttcattaaCTGAAACACAGCACCGAGTTGGAGTTAGTC
CTGATCTCCTAGACAACGGTCAATACTACTACTGCGCCTTCACATGGGAT
AAATCataactggacgtctatcttccattgtgtctttgaagcgagcttcg
ttgccgcctgtattattaaattggtataaaaaagcCGTTGATATTCCGTC
ACAATGCTATTTCGTTGAATTacttaggtaaaatgattgatagatagCTT
GATAGTTTGAAAATCTATACTGTATATTAATatgctaaaacgtgtgtgtt
tacaacgttttataaaaagttttcgaaaatctaacaaagctctacaaagc
ctcctcttcatggcgttgaacttttttctcctttcttttataaaatcaaa
atcttatcatCAATCAGCAGCTATCTTTCTTCCGTTGGGTATTTTTTTTA
TGTATAGTGATttgctggattgggacacgcagcgtgcgacgctgcgcata
cggctagttacTCTCAAGTCACaaaatgattattttcaattttttttata
cgcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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agaattttaaaatcaagatttcttaatattatacttagatttttgtaaga
aaacggGGATATTTTGGACATGTAGCTTAAAGCATTATTTTATATGGCAA
CAACTTCTTTAAAGCGCTTTAAGTTAAAACTCCTACAGTCTGACTTCTTC
AACTAGCTGAAGGCTTTGTGTTGCACTCATGTAGTTAAAGCGGATATACA
ATGATGCATTGGATTCATTATACGCCTCTTATAATTGTAACAGTAACCAG
AATAGCCCCAAGCAGGTTCACAAATATGGCTCCATCACTAGGCTTCCTAC
AATGGCCTTGGATTATCGCCTCTCGAAGCCATATTATGCCAACGTTTTTT
GGTCCTACAGACAACACagattctaagccctctaaatctcgTTTCATGCA
TGAACAATGAAGATAAAGGAATTGGCGAANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNccagaagcttaaaatattcttattaccataag
gaacaagaaaaaccccaagaaagttagtccaccaaatggataagatactt
cccggctcgtacctgtATAAAAGGGTAGACGAGTGCAGAATGAACTTGGA
CAAACTTAGTCCActataaaaataatctttaacatAACCAGCTCCTAGAA
TAAGTACTAGTAAATAACACTACGTTcaggctattttgaaatgttttcaa
ggGGCTATTATTCCCAAAATCATCCAAACGACCATGTTACTCCTCGTTAA
TTTTTATGGACAAATTAAAATTCAGCCACTCCTCCTTGTAACTTATTTTG
TTCAcatatcttttttaattttcctttttatttttgtcactTAAATAGAA
GTCGAATGACAActaataaatcaaaatattctaaTTGCACAACTGTGAAA
TCaattagtttttgaaaaaggtcataaagatttttatttttctcttttcg
cgGGGTGATTACAGCAGGTTTATTACGGATTAATCACCCTGCTCCTCCCT
TACATTTCTAAGCTAAAATGTAATCAGCCATATGATTACATGAAAAGAGT
CACACTTACATTTTGAGAATTAATTGATGAAGGCTAAAATAGCTTCACTT
GTCTACTTGTCTACTTATATGTTTACGAAGTAACTTCGACCTCTATATAT
ACTAGGTCACTACTAAAATAAATCTTAATTGCCTGATTACATAATTAGGG
TTGGGGTTAATGTCGTTAGCTATAGCATTTCAAAATAGTCGTAAAATAAA
ACTTAAGGAAGACTTAACAGGAAGTACTCAAATAGGGAATTTGAAAGTAA
TTAAAGGGGTAATGACAGTTAGCTTTCTGAGGAGCAAATATAATTTGATA
TTGACTTTAATCATGCGAAAATGGGGATAAATGGCTTCCTGAGATTGTGA
AACCTCGATTGTATTCACGAATCCAAGAGTTAACTTGGGGTTGCGCtcag
aatttcaattttttaatttccatCTCTTTCCATCACTCTTTATGAGTATA
TATaaacagatttaaaaaatatatttacagtTAACTTGTTGaggatttaa
aggttttatttttacataagtgttcccgtttatATCAGACGCATATTtaa
tatcaggacagtgtctgcctattgttttATTATGCTTATATAtccggggg
ggtacttaggcaaaatgggtgctgggtatgtgcgaacCATAAAGGTTCCT
TTTTCACACTCCCGAAAGCCTCTCAAAGGAGTCGTGATTtccaaaatttg
aacaaaagtcaagtgaaaatcgacaaaaattttgagaaaagtctctctaa
gggtcccaaaaaacgcCAACTTTTcttctctctaagggtcgattttcgat
ttttggctcgtcAACTGGCAAACCTACATATAAtataaacctttttcatt
tttctctcaGATTGGTGTTGATTTTGCTTTGAAAGTGTTGAATTGGGATG
ACAAAACATTGATACGTCTACAGCTATGGGATATAGCaggtgaaactttt
ttttttattgaaccaaaataaaaaaatgaagatacGACTTTTGCAAAAAT
AGATTCTGTCACATTTGCAAAAcgcgctttttttataagaatacacttta
taagaatgtccatgataaaaatagccaaaaaagctaagaatatcaccatc
atggagtTTTGCTACTCAaactaagaatgccatttttagagtacTTTCAA
TTATAAGTcgccccaagtaaggctcactccttcacaaaaatgccattatA
TGCTTGAGGCGTACGTACTAAAtattaaatctagtctgaattaggatcct
aacctaagatgcggtaagaatattttaggatgattttcccaaaaaagtta
aaactattcatgatgaaatggatttacaccattcttataaaaaaagcgtt
tacCACACAAGTCATCttttcattttaagaaaatacTAGTAACAATTTCT
ACGTGGTTCTAccactacagggtgtccctaattaaagtatcgagtttgaa
catgcgattgagtagaaaagtttgtgtgtgttatcgctaaaatataagaa
cgttctccatcacacaggcttattaNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaggtagttacaa
cgtataaattaatcgtaatgacaaagaaaaaagagggagagcttaaaata
caattttgtgaacacgcacataaaactttctactcataaattgtgtttcg
actcgatactttaattagggacaccctgtatttacCTTTTAATTAGTTCT
ACGAAATAGAATTGGTTgtaaattatattttcattatttttgtttcaaat
tcttTAGGACAAGAACGTTTTGGAAACATGACAAGGGTAATGATCGTTTG
AATTATTCTAGAGATCGTcctatcattatttttttaacccTTACTGAAGT
TATCAAAGTAGTGAAAATAGGGTACACGCCTTATAATGCCTCAATGTCAC
CAtagaaataagaacatgataagaacaattttaggctcaaagtgccaaaa
aaataagaacagatgAGCTTCTTAAAAGATTTGCTGGGTCTTATGTAAAA
AATGCACAAtggaatctccataactcgagcaTGCAAGCGGGGGATACAAA
TTTATTCGAGTTTAGGAAATcccgagttatggagtaaggtttataagaca
GTGTTAACTTTAGGGAGAATAAACTTGTTCGAGTGTAGGAGACGTTGGAG
TTAGAGGTTTGATAAAATCAATAAATCCACTGAATTTGATTTCTTGCTTC
ACATGTGTATTACAAAGAAGCTGTGGGATGAAGACTTGTCTGAAATCTAG
CGTCTCCGCTGCTTCTTGTTTACAtcaagggaactaattttcgcgggaac
taatttttgttttttccgcGGTTTTTCAGCAACCCACAGAACCCACGAAT
TACTAATTTAGCCATTCtatcaaaaaagttgaaaaatccctagaaatAAC
GAAAAAAATGTGTCGAAAATATGGCAAAActtcgaaaattaattcccgcg
agagacgattttttcgaattttttttctactgcaaaaattagttcctttt
taaaaatttttatactTTCACATACACAGGTGTATTACAAAGAAGCCGTA
GGATGTTTCATCGTGTTCGATGTAACGAGACAATCAACATTCGAAGCAGT
CTCTAAATGGAAGAACGATCTCGATACTAAAGTTCAACTTCCTGATGGAA
AACCAATCCCATGTTTATTATTAGCTAACAAAGTAAGTTTAGTTTTACTC
CTGACTaaagtaacctgataacagattgtatattttctggcccagtacgc
tgaagctctaaagacgtgggcgaaaatatagtttttagcgatctttagag
cttcagggTGCTGTCGCGTTAAGAAAACTCCACAGTTGTTATCAGGTTAG
ACTACAGAGGAAAGCTAGTAGGTAGGCTTGGTTAGTGAAGAATGACTCGG
TAAATTGCATACTTTTACTATACAAGTGTTTTTCCATTCATCATCGAAAT
TCTTAACTTCTTGGGGAAATtcattctaaaatattcttacggtattctta
ggtcaAGATCGAaattaaaaacttaaatttaacatgtaatacccacctga
agcataaaatggcattttcgtATTGAGCCTTACTCGggaagggctactta
gactacacattATATTGGTGATCAATATTCAACAAAATTgcttgcggacc
gtaatgtacgaagtaaccAACAGttgctctattataaaaaggagttttct
ttctgtaaacaatccccctatattgttggcaaatcgagctgacaatatat
tgcggacaacttttcaatatattgccagcATTCAACAATATATTCTCAAT
ATATTGcccgacaatatattgtgtagtgtatgtagccctttaggTTCTGT
TCAAATTTCattataaatattcttatagagtatAATTTGTAGCTAGAAAT
GTGTTATCCCTTTCCAGTGAAGGGATACGCCGATAAAGTGATCATTCTCC
TTCAGTTAATTTAACCAACACTGGGCTTAATCCACCACAGTTATCTTTTT
TCTAGGTAGATTTTTTGGATGATAATTTTCTAGAAGAAAAATTAATATGA
AGCATCACACGAACAAAGCATGTATGAACAGACTGAAAACTTATATAAGA
AGCCATCTGTTTCATTTCTCTTTAGTGTGATCAACCGAAAGAAGGGTTAG
TCAATAAGCCATCAGATATGGATAAATTTTGTGAAGAGAAAGGGTTCATT
GGTTGGTACGAGACAAGTGCCAAAGAAAACATAAATATCGATGAAGCTTC
GAAATTCCTTGTTCAAAAGGTAGGTATCAAAGTTGTTTAAGATATTGTTG
GCAAATTCCCTAAAACCATTATTGTtagctacaatcaaggtcattatatt
tgagaaaaagggtaattcctacgaaatcttaCAGCCACAAACGATTTGAA
AGCGCTCTGATTTATTTTCGCAGGGTAGAGTCTTAAccctgagttttaac
actagacttaacaACATCCAAATAGTTCAAGATTGGTCCAATacggctca
gaatatagcctgaaagTCTATGAACCCCTCCCTAATTGAAAATTTCGATT
ACATTTTACAAATAGCCCCAAAGTGACTTTCTGGCCCGAAGCGaagaaat
aaccaaaattctcaatatgtTTTGACgatacagtgccgtaggaagcattt
tcatattgggggggctgaagtttagtgacactgcgagggccaaccatggt
ttggcccgagggggaaaatttttaaaatttttgtaaaacatgAAGCTGAG
CTGAATAGGACTGAACATTCCGAGATTATCTTtagacatttttgtgaaat
tcttaAAGACATACACTGACTGATTTTTTATCTTACCACTCTACCAAAGC
TTGCCGAAGTTAGATATGAGATAGTAGAttgcacttttttttataagaac
aaattatataagaacataaggctttggtggccaaaatcttaagaacaaat
taagaatattttaaggctttgtgttCTTTAAAACACCTGTTTtgttagga
aaatggacaaaaatactcaaaaataacatgctaaaaacatttttaggctt
gaaacccgaAAAGCTAAGAGCATCTGaaggattcaaaaattttggatatt
cttataaaaaaacgtgtattatttgatttctattatTCTGTTTCGTAGAT
TCTAGAGAACGATCGAGCCAACAATCTGACAAGTCCAGACATCGATGATG
ATAAAATTGACCTGAGGAAGAAGCCTGTTGATGTCGTCACGCAGCAAGAA
CGCTCGGGCTGCTGCTAAGTAATCTATACTAGACAGTTAGCGTCCGTCCC
TGGTAAGAGGGAATCCGGTTCTGTTATAATTTTTAGATAAATTCATTTTG
TAgataataaaaaagtatttcagCAATTATATAATTTTAAGATGATCCGT
ACTTTTTAGAATAATAGAGGATATGTTCATGGGGTGGaaacttcttcatt
tttaaaaacattttgacccTAAATATTGAAGttgcttaaccctttaagtg
ccgatgtcgtatatatacgacatgggctatataggagggcgaagccctcc
tgtaatgcccagtttgagttagaaatcgttaNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNcgagctatatacgagcttctaattccttctagatcaggagatataag
cccttaaagtttgaactagcgatttttttaaaaaaacttagaaaaaagga
ccatggcactcaaagggttaagatTCTGCAAAACTTGCGATCAAATTTTA
AGCTATTCTAATGAGCGAATGCCCAAAACTCTTGAAATGTGTTTTATTCT
TGTAACTTTTCTTTTGGGTATATCCCCATAAACTTCGATATTTCTTATAT
ACTTCGATatgttattttatattttatcctTGATATAAAAAGAAGCACAA
TTTGTTTTATCTTTTATAGACTTTTAAACGAAATCACATTTAATGCcagt
tatatttttttttcaaaattaaaaggtaataatatttttgtgcttttgaa
tttttttaatagaattctttatttacattttgttttgtttttgttgacaA
CAATCTAACTTTGGGTATCTATGTCGTCAGGACTAGCTCAGTAAAAATTT
CACGGAATTTGAATTTGCCATGTTTTGACAGAATATTACACAAGTAAggt
cagtagcgtagacaagagggtGCACAACAtagtatgaacccccccccttt
tttaagggggggggatccgagttttcaaggaaggctttataggggggatg
ggca

Coding sequence (CDS) from alignment at sc0000001:359692..372295+

>TCONS_00000017 ID=TCONS_00000017|Name=TCONS_00000017|organism=Clytia hemisphaerica|type=CDS|length=3852bp|location=Sequence derived from alignment at sc0000001:359692..372295+ (Clytia hemisphaerica)
ATGGAAAAGAAAGAACATTTGTACAAGATTTTGGTCATTGGAGACTTGGG
AACAGGAAAGACCAGTATAATCAAACGTTATGTTCACAATTTCTTCTCAG
TTCACTACAGGGCAACTATTGGTGTTGATTTTGCTTTGAAAGTGTTGAAT
TGGGATGACAAAACATTGATACGTCTACAGCTATGGGATATAGCagGACA
AGAACGTTTTGGAAACATGACAAGGGTGTATTACAAAGAAGCCGTAGGAT
GTTTCATCGTGTTCGATGTAACGAGACAATCAACATTCGAAGCAGTCTCT
AAATGGAAGAACGATCTCGATACTAAAGTTCAACTTCCTGATGGAAAACC
AATCCCATGTTTATTATTAGCTAACAAATGTGATCAACCGAAAGAAGGGT
TAGTCAATAAGCCATCAGATATGGATAAATTTTGTGAAGAGAAAGGGTTC
ATTGGTTGGTACGAGACAAGTGCCAAAGAAAACATAAATATCGATGAAGC
TTCGAAATTCCTTGTTCAAAAGATTCTAGAGAACGATCGAGCCAACAATC
TGACAAGTCCAGACATCGATGATGATAAAATTGACCTGAGGAAGAAGCCT
GTTGATGTCGTCACGCAGCAAGAACGCTCGGGCTGCTGCTAAATGGAAAA
GAAAGAACATTTGTACAAGATTTTGGTCATTGGAGACTTGGGAACAGGAA
AGACCAGTATAATCAAACGTTATGTTCACAATTTCTTCTCAGTTCACTAC
AGGGCAACTATTGGTGTTGATTTTGCTTTGAAAGTGTTGAATTGGGATGA
CAAAACATTGATACGTCTACAGCTATGGGATATAGCagGACAAGAACGTT
TTGGAAACATGACAAGGGTGTATTACAAAGAAGCCGTAGGATGTTTCATC
GTGTTCGATGTAACGAGACAATCAACATTCGAAGCAGTCTCTAAATGGAA
GAACGATCTCGATACTAAAGTTCAACTTCCTGATGGAAAACCAATCCCAT
GTTTATTATTAGCTAACAAATGTGATCAACCGAAAGAAGGGTTAGTCAAT
AAGCCATCAGATATGGATAAATTTTGTGAAGAGAAAGGGTTCATTGGTTG
GTACGAGACAAGTGCCAAAGAAAACATAAATATCGATGAAGCTTCGAAAT
TCCTTGTTCAAAAGATTCTAGAGAACGATCGAGCCAACAATCTGACAAGT
CCAGACATCGATGATGATAAAATTGACCTGAGGAAGAAGCCTGTTGATGT
CGTCACGCAGCAAGAACGCTCGGGCTGCTGCTAAATGGAAAAGAAAGAAC
ATTTGTACAAGATTTTGGTCATTGGAGACTTGGGAACAGGAAAGACCAGT
ATAATCAAACGTTATGTTCACAATTTCTTCTCAGTTCACTACAGGGCAAC
TATTGGTGTTGATTTTGCTTTGAAAGTGTTGAATTGGGATGACAAAACAT
TGATACGTCTACAGCTATGGGATATAGCagGACAAGAACGTTTTGGAAAC
ATGACAAGGGTGTATTACAAAGAAGCCGTAGGATGTTTCATCGTGTTCGA
TGTAACGAGACAATCAACATTCGAAGCAGTCTCTAAATGGAAGAACGATC
TCGATACTAAAGTTCAACTTCCTGATGGAAAACCAATCCCATGTTTATTA
TTAGCTAACAAATGTGATCAACCGAAAGAAGGGTTAGTCAATAAGCCATC
AGATATGGATAAATTTTGTGAAGAGAAAGGGTTCATTGGTTGGTACGAGA
CAAGTGCCAAAGAAAACATAAATATCGATGAAGCTTCGAAATTCCTTGTT
CAAAAGATTCTAGAGAACGATCGAGCCAACAATCTGACAAGTCCAGACAT
CGATGATGATAAAATTGACCTGAGGAAGAAGCCTGTTGATGTCGTCACGC
AGCAAGAACGCTCGGGCTGCTGCTAAATGGAAAAGAAAGAACATTTGTAC
AAGATTTTGGTCATTGGAGACTTGGGAACAGGAAAGACCAGTATAATCAA
ACGTTATGTTCACAATTTCTTCTCAGTTCACTACAGGGCAACTATTGGTG
TTGATTTTGCTTTGAAAGTGTTGAATTGGGATGACAAAACATTGATACGT
CTACAGCTATGGGATATAGCagGACAAGAACGTTTTGGAAACATGACAAG
GGTGTATTACAAAGAAGCCGTAGGATGTTTCATCGTGTTCGATGTAACGA
GACAATCAACATTCGAAGCAGTCTCTAAATGGAAGAACGATCTCGATACT
AAAGTTCAACTTCCTGATGGAAAACCAATCCCATGTTTATTATTAGCTAA
CAAATGTGATCAACCGAAAGAAGGGTTAGTCAATAAGCCATCAGATATGG
ATAAATTTTGTGAAGAGAAAGGGTTCATTGGTTGGTACGAGACAAGTGCC
AAAGAAAACATAAATATCGATGAAGCTTCGAAATTCCTTGTTCAAAAGAT
TCTAGAGAACGATCGAGCCAACAATCTGACAAGTCCAGACATCGATGATG
ATAAAATTGACCTGAGGAAGAAGCCTGTTGATGTCGTCACGCAGCAAGAA
CGCTCGGGCTGCTGCTAAATGGAAAAGAAAGAACATTTGTACAAGATTTT
GGTCATTGGAGACTTGGGAACAGGAAAGACCAGTATAATCAAACGTTATG
TTCACAATTTCTTCTCAGTTCACTACAGGGCAACTATTGGTGTTGATTTT
GCTTTGAAAGTGTTGAATTGGGATGACAAAACATTGATACGTCTACAGCT
ATGGGATATAGCagGACAAGAACGTTTTGGAAACATGACAAGGGTGTATT
ACAAAGAAGCCGTAGGATGTTTCATCGTGTTCGATGTAACGAGACAATCA
ACATTCGAAGCAGTCTCTAAATGGAAGAACGATCTCGATACTAAAGTTCA
ACTTCCTGATGGAAAACCAATCCCATGTTTATTATTAGCTAACAAATGTG
ATCAACCGAAAGAAGGGTTAGTCAATAAGCCATCAGATATGGATAAATTT
TGTGAAGAGAAAGGGTTCATTGGTTGGTACGAGACAAGTGCCAAAGAAAA
CATAAATATCGATGAAGCTTCGAAATTCCTTGTTCAAAAGATTCTAGAGA
ACGATCGAGCCAACAATCTGACAAGTCCAGACATCGATGATGATAAAATT
GACCTGAGGAAGAAGCCTGTTGATGTCGTCACGCAGCAAGAACGCTCGGG
CTGCTGCTAAATGGAAAAGAAAGAACATTTGTACAAGATTTTGGTCATTG
GAGACTTGGGAACAGGAAAGACCAGTATAATCAAACGTTATGTTCACAAT
TTCTTCTCAGTTCACTACAGGGCAACTATTGGTGTTGATTTTGCTTTGAA
AGTGTTGAATTGGGATGACAAAACATTGATACGTCTACAGCTATGGGATA
TAGCagGACAAGAACGTTTTGGAAACATGACAAGGGTGTATTACAAAGAA
GCCGTAGGATGTTTCATCGTGTTCGATGTAACGAGACAATCAACATTCGA
AGCAGTCTCTAAATGGAAGAACGATCTCGATACTAAAGTTCAACTTCCTG
ATGGAAAACCAATCCCATGTTTATTATTAGCTAACAAATGTGATCAACCG
AAAGAAGGGTTAGTCAATAAGCCATCAGATATGGATAAATTTTGTGAAGA
GAAAGGGTTCATTGGTTGGTACGAGACAAGTGCCAAAGAAAACATAAATA
TCGATGAAGCTTCGAAATTCCTTGTTCAAAAGATTCTAGAGAACGATCGA
GCCAACAATCTGACAAGTCCAGACATCGATGATGATAAAATTGACCTGAG
GAAGAAGCCTGTTGATGTCGTCACGCAGCAAGAACGCTCGGGCTGCTGCT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000009XLOC_000009Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000017-proteinTCONS_00000017-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000017-exon-sc0000001-1491911889:359692..359960TCONS_00000017-exon-sc0000001-1491911889:359692..359960Clytia hemisphaericaexon
TCONS_00000017-exon-sc0000001-1510915933:359692..359960TCONS_00000017-exon-sc0000001-1510915933:359692..359960Clytia hemisphaericaexon
TCONS_00000017-exon-sc0000001-1575043694:359692..359960TCONS_00000017-exon-sc0000001-1575043694:359692..359960Clytia hemisphaericaexon
TCONS_00000017-exon-sc0000001-1491911889:366852..366930TCONS_00000017-exon-sc0000001-1491911889:366852..366930Clytia hemisphaericaexon
TCONS_00000017-exon-sc0000001-1510915933:366852..366930TCONS_00000017-exon-sc0000001-1510915933:366852..366930Clytia hemisphaericaexon
TCONS_00000017-exon-sc0000001-1575043694:366852..366930TCONS_00000017-exon-sc0000001-1575043694:366852..366930Clytia hemisphaericaexon
TCONS_00000017-exon-sc0000001-1491911889:367799..367827TCONS_00000017-exon-sc0000001-1491911889:367799..367827Clytia hemisphaericaexon
TCONS_00000017-exon-sc0000001-1510915933:367799..367827TCONS_00000017-exon-sc0000001-1510915933:367799..367827Clytia hemisphaericaexon
TCONS_00000017-exon-sc0000001-1575043694:367799..367827TCONS_00000017-exon-sc0000001-1575043694:367799..367827Clytia hemisphaericaexon
TCONS_00000017-exon-sc0000001-1491911889:368571..368723TCONS_00000017-exon-sc0000001-1491911889:368571..368723Clytia hemisphaericaexon
TCONS_00000017-exon-sc0000001-1510915933:368571..368723TCONS_00000017-exon-sc0000001-1510915933:368571..368723Clytia hemisphaericaexon
TCONS_00000017-exon-sc0000001-1575043694:368571..368723TCONS_00000017-exon-sc0000001-1575043694:368571..368723Clytia hemisphaericaexon
TCONS_00000017-exon-sc0000001-1491911889:369667..369810TCONS_00000017-exon-sc0000001-1491911889:369667..369810Clytia hemisphaericaexon
TCONS_00000017-exon-sc0000001-1510915933:369667..369810TCONS_00000017-exon-sc0000001-1510915933:369667..369810Clytia hemisphaericaexon
TCONS_00000017-exon-sc0000001-1575043694:369667..369810TCONS_00000017-exon-sc0000001-1575043694:369667..369810Clytia hemisphaericaexon
TCONS_00000017-exon-sc0000001-1491911889:370690..370809TCONS_00000017-exon-sc0000001-1491911889:370690..370809Clytia hemisphaericaexon
TCONS_00000017-exon-sc0000001-1510915933:370690..370809TCONS_00000017-exon-sc0000001-1510915933:370690..370809Clytia hemisphaericaexon
TCONS_00000017-exon-sc0000001-1575043694:370690..370809TCONS_00000017-exon-sc0000001-1575043694:370690..370809Clytia hemisphaericaexon
TCONS_00000017-exon-sc0000001-1491911889:371961..372295TCONS_00000017-exon-sc0000001-1491911889:371961..372295Clytia hemisphaericaexon
TCONS_00000017-exon-sc0000001-1510915933:371961..372295TCONS_00000017-exon-sc0000001-1510915933:371961..372295Clytia hemisphaericaexon
TCONS_00000017-exon-sc0000001-1575043694:371961..372295TCONS_00000017-exon-sc0000001-1575043694:371961..372295Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:359692..372295 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.47002	1.51085	1.11395	1.25302	0.929741	2.56274	2.89382	3.48832	3.35372	2.61907	0.822909	1.85883	5.85141	5.04437	8.43471	11.1243	11.4807	7.61786	6.29388	11.6495	10.1516	10.8981	7.9956	7.06754	7.45335	9.18362	20.3304	14.2817	25.577	18.5263
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR030697Rab29/Rab38/Rab32
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005802trans-Golgi network
GO:0031982vesicle
GO:0005794Golgi apparatus
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0031982 vesicle
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00000017 vs. Swiss-Prot (Human)
Match: RAB32 (Ras-related protein Rab-32 OS=Homo sapiens GN=RAB32 PE=1 SV=3)

HSP 1 Score: 284.263 bits (726), Expect = 5.902e-94
Identity = 130/176 (73.86%), Postives = 154/176 (87.50%), Query Frame = 3 
Query:  168 HLYKILVIGDLGTGKTSIIKRYVHNFFSVHYRATIGVDFALKVLNWDDKTLIRLQLWDIAGQERFGNMTRVYYKEAVGCFIVFDVTRQSTFEAVSKWKNDLDTKVQLPDGKPIPCLLLANKCDQPKEGLVNKPSDMDKFCEEKGFIGWYETSAKENINIDEASKFLVQKILENDRA 695
            HL+K+LVIG+LG GKTSIIKRYVH  FS HYRATIGVDFALKVLNWD +TL+RLQLWDIAGQERFGNMTRVYYKEAVG F+VFD++R STFEAV KWK+DLD+KV LP+G PIP +LLANKCDQ K+     PS +D+FC+E GF GW+ETSAK+NINI+EA++FLV+KIL N ++
Sbjct:   24 HLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLANKCDQNKDS-SQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNHQS 198
The following BLAST results are available for this feature:
BLAST of TCONS_00000017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB325.902e-9473.86Ras-related protein Rab-32 OS=Homo sapiens GN=RAB3... [more]
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