TCONS_00000017-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000017-protein
Unique NameTCONS_00000017-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length213

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000017-protein ID=TCONS_00000017-protein|Name=TCONS_00000017-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
MEKKEHLYKILVIGDLGTGKTSIIKRYVHNFFSVHYRATIGVDFALKVLN
WDDKTLIRLQLWDIAGQERFGNMTRVYYKEAVGCFIVFDVTRQSTFEAVS
KWKNDLDTKVQLPDGKPIPCLLLANKCDQPKEGLVNKPSDMDKFCEEKGF
IGWYETSAKENINIDEASKFLVQKILENDRANNLTSPDIDDDKIDLRKKP
VDVVTQQERSGCC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000009XLOC_000009Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000017TCONS_00000017Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR030697Rab29/Rab38/Rab32
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005802trans-Golgi network
GO:0031982vesicle
GO:0005794Golgi apparatus
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0031982 vesicle
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 116..129
score: 36.06
coord: 31..47
score: 33.9
coord: 50..72
score: 40.61
coord: 8..29
score: 38.23
coord: 153..175
score: 34.69
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 10..174
e-value: 4.9E-8
score: -15.5
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 13..213
e-value: 1.8E-8
score: 44.1
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 8..178
e-value: 1.0E-66
score: 237.6
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 5..178
e-value: 2.2E-11
score: 44.1
NoneNo IPR availableGENE3D3.30.70.1390coord: 6..72
e-value: 2.4E-23
score: 81.4
NoneNo IPR availableGENE3D3.40.50.300coord: 73..176
e-value: 1.6E-24
score: 85.3
NoneNo IPR availablePROSITEPS51419RABcoord: 3..213
score: 32.032
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 9..176
e-value: 2.0E-42
score: 144.4
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 8..171
e-value: 2.5E-20
score: 70.8
IPR030697Ras-related protein Rab29/Rab38/Rab32CDDcd04107Rab32_Rab38coord: 8..213
e-value: 8.59286E-125
score: 353.153
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..181

Blast
[Close]
BLAST of TCONS_00000017-protein vs. Swiss-Prot (Human)
Match: RAB32 (Ras-related protein Rab-32 OS=Homo sapiens GN=RAB32 PE=1 SV=3)

HSP 1 Score: 295.434 bits (755), Expect = 1.644e-102
Identity = 139/212 (65.57%), Postives = 170/212 (80.19%), Query Frame = 0 
Query:    2 EKKEHLYKILVIGDLGTGKTSIIKRYVHNFFSVHYRATIGVDFALKVLNWDDKTLIRLQLWDIAGQERFGNMTRVYYKEAVGCFIVFDVTRQSTFEAVSKWKNDLDTKVQLPDGKPIPCLLLANKCDQPKEGLVNKPSDMDKFCEEKGFIGWYETSAKENINIDEASKFLVQKILENDRANNLTSPDIDDDKIDLRKKPVDVVTQQERSGCC 213
            E +EHL+K+LVIG+LG GKTSIIKRYVH  FS HYRATIGVDFALKVLNWD +TL+RLQLWDIAGQERFGNMTRVYYKEAVG F+VFD++R STFEAV KWK+DLD+KV LP+G PIP +LLANKCDQ K+     PS +D+FC+E GF GW+ETSAK+NINI+EA++FLV+KIL N ++      D+D  K+D      + +  + +S CC
Sbjct:   20 ETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLANKCDQNKDS-SQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNHQSFPNEENDVDKIKLDQ-----ETLRAENKSQCC 225
The following BLAST results are available for this feature:
BLAST of TCONS_00000017-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB321.644e-10265.57Ras-related protein Rab-32 OS=Homo sapiens GN=RAB3... [more]
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