Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00000017-protein ID=TCONS_00000017-protein|Name=TCONS_00000017-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
MEKKEHLYKILVIGDLGTGKTSIIKRYVHNFFSVHYRATIGVDFALKVLN
WDDKTLIRLQLWDIAGQERFGNMTRVYYKEAVGCFIVFDVTRQSTFEAVS
KWKNDLDTKVQLPDGKPIPCLLLANKCDQPKEGLVNKPSDMDKFCEEKGF
IGWYETSAKENINIDEASKFLVQKILENDRANNLTSPDIDDDKIDLRKKP
VDVVTQQERSGCC Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0003924 | GTPase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005802 | trans-Golgi network |
| GO:0031982 | vesicle |
| GO:0005794 | Golgi apparatus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0016192 | vesicle-mediated transport |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0016192 |
vesicle-mediated transport |
| cellular_component |
GO:0005794 |
Golgi apparatus |
| cellular_component |
GO:0005802 |
trans-Golgi network |
| cellular_component |
GO:0031982 |
vesicle |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | PRINTS | PR00449 | RASTRNSFRMNG | coord: 116..129
score: 36.06
coord: 31..47
score: 33.9
coord: 50..72
score: 40.61
coord: 8..29
score: 38.23
coord: 153..175
score: 34.69 |
| None | No IPR available | SMART | SM00174 | rho_sub_3 | coord: 10..174
e-value: 4.9E-8
score: -15.5 |
| None | No IPR available | SMART | SM00176 | ran_sub_2 | coord: 13..213
e-value: 1.8E-8
score: 44.1 |
| None | No IPR available | SMART | SM00175 | rab_sub_5 | coord: 8..178
e-value: 1.0E-66
score: 237.6 |
| None | No IPR available | SMART | SM00173 | ras_sub_4 | coord: 5..178
e-value: 2.2E-11
score: 44.1 |
| None | No IPR available | GENE3D | 3.30.70.1390 | | coord: 6..72
e-value: 2.4E-23
score: 81.4 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 73..176
e-value: 1.6E-24
score: 85.3 |
| None | No IPR available | PROSITE | PS51419 | RAB | coord: 3..213
score: 32.032 |
| IPR001806 | Small GTPase superfamily | PFAM | PF00071 | Ras | coord: 9..176
e-value: 2.0E-42
score: 144.4 |
| IPR005225 | Small GTP-binding protein domain | TIGRFAM | TIGR00231 | TIGR00231 | coord: 8..171
e-value: 2.5E-20
score: 70.8 |
| IPR030697 | Ras-related protein Rab29/Rab38/Rab32 | CDD | cd04107 | Rab32_Rab38 | coord: 8..213
e-value: 8.59286E-125
score: 353.153 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 2..181 |
Blast
BLAST of TCONS_00000017-protein vs. Swiss-Prot (Human)
Match: RAB32 (Ras-related protein Rab-32 OS=Homo sapiens GN=RAB32 PE=1 SV=3) HSP 1 Score: 295.434 bits (755), Expect = 1.644e-102 Identity = 139/212 (65.57%), Postives = 170/212 (80.19%), Query Frame = 0 Query: 2 EKKEHLYKILVIGDLGTGKTSIIKRYVHNFFSVHYRATIGVDFALKVLNWDDKTLIRLQLWDIAGQERFGNMTRVYYKEAVGCFIVFDVTRQSTFEAVSKWKNDLDTKVQLPDGKPIPCLLLANKCDQPKEGLVNKPSDMDKFCEEKGFIGWYETSAKENINIDEASKFLVQKILENDRANNLTSPDIDDDKIDLRKKPVDVVTQQERSGCC 213
E +EHL+K+LVIG+LG GKTSIIKRYVH FS HYRATIGVDFALKVLNWD +TL+RLQLWDIAGQERFGNMTRVYYKEAVG F+VFD++R STFEAV KWK+DLD+KV LP+G PIP +LLANKCDQ K+ PS +D+FC+E GF GW+ETSAK+NINI+EA++FLV+KIL N ++ D+D K+D + + + +S CC
Sbjct: 20 ETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLANKCDQNKDS-SQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNHQSFPNEENDVDKIKLDQ-----ETLRAENKSQCC 225
The following BLAST results are available for this feature:
BLAST of TCONS_00000017-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 ( Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| RAB32 | 1.644e-102 | 65.57 | Ras-related protein Rab-32 OS=Homo sapiens GN=RAB3... | [more] |
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