TCONS_00000014 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000014
Unique NameTCONS_00000014
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1933

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000014 ID=TCONS_00000014|Name=TCONS_00000014|organism=Clytia hemisphaerica|type=transcript|length=1933bp
CTTCTAGATCTTCAACCTTCTCTACCTTCTACCAGCACCAGGGTATATta
tacaacaaaatataatGTCATCGCACAAGGCAGTAGAGCATACAGCTGCA
AATCTGGATGGTTTATGGACAGTAATAGCAAAAACGAGGAACTTTGATAA
TGAAGTTTCATCTTCCAAGAAAGCTATTGTTGTCATTCCTGGTAATCCTG
GTTTGGTTGAATTTTATGAATTGTTTATGGAATGTTTGTACAAGTTAAAG
GGGATTCCAATTATCGGTTTTTCACATGCAGGACATTCACCGATCCACCC
ATACACAGATGAACCAATGAGAACTCCTCCATTAACCTTGCAAGAACAAA
TTCAACACAAGAAGGACTGTGTCCGACAATTCATTCCTGACGACTGCAAT
ATCATCTTTATCGGACATTCCATAGGAGCTTATATTATTCTACAGCTTAT
GGACCATATACCAGAAAGATCGCTTCATGGTATATTACTCTTCCCCACCA
TCACGAACATGATTGGAACAGTTGACGGAAAATTCTGGAATCTGATAACT
TCATATCTCAAACTCCCTTTACTATGGACTGCATATTTTTCCTCTTATCT
ACCTTACGCCCTACAAGATGTTTTGATACGATGGCGTGCAAAATGGCGGC
AAATTGACGCCCCGATCGTACCAGTGTGCAGACGATGTGTCTCTTGGGAC
GTTTTAAGTCAAGGTTTCCGTATGGTCGAATGTGAGTTAGTAGAAGTCAA
AACTTTGAATCCGGAATTATCCCGGATTATACGACGATATTCCAATAAAT
TGACGGTTTATTATGGTGACGGTGACGCATGGACgcctttttctttttat
gaggAATTTATACAGAAATTTCCTGAAGTGAAAACTTTCTACGGACGTGA
TGGTTTTAAACATGATTTTGTACTTGACTCTTCGGAAGGTGTAGCGAGGC
TATGTAATAAGTTTATTGAGAAGTTATGATAGTTCATGATTATAAGcatc
ttttacatttttatcataaCCTAGCTTTAACTTCAGATATCCTCTATGTA
TAAGACACAGATTTGCAGCCGTTATaagtttttttacaatatttggAGGA
TGTACCGTGTTTCAATCCCGACTTATGGAAGATTTCGAAAATCGTTAAAA
CTCATTTTCGGGTCAATAACTTTTTGCCCAAGGTGTAAAAATCGACTCTA
CCCCACATTCGAAAGcagataaaattatctttccaacggtgtctAGAAAC
CTTCTATTCGaattttttctaggttgacTCTATTTTCGACAAAATTCTAC
AGGACTAAAACTGTAAAAGTTGACATTccgttttataaaaatatacctTT
TCGACTACTAAAATCTATTgctagtttgagtaaagaaaattaATACTCAA
AGTTTTATGCCATTCTTTAGTAGTATACTCAAACTAGTATGAAGCTTGTC
ATTAATATTGATCACTGTTATTAGTTTTCGCTTACACAAGGAATGTATAG
AATTTATTCTTGaattttaaatatctttttggGCGATATCGTGTAACCCT
GTATTAATGATTCAATACTCTGACCACTCTAGAACCATCTATGTAACATG
GTCAAAGGAATTTTTGTTTCTAGTTAATTTTTAAATTGTTATGAGAATTA
TTAGATGATGATGTTCATGTAAATAGATGAATTTGtctttaaaactttta
tttCGCATTTTATGAGAGattttatttctgattttttaaattattgcTCG
GGTCTAACGGAAATCTTTAGGTCTCTAAAATGGCAATTTAATGCTTCGAA
AATACTACCTTTTGACGTGagttttctcgaattttcaacCATTGGAGACC
GAAATAATCGCATGAAAACTCTTAAATTTGGTATCCCTTAGActctttaa
gtgccaatgtcgagtATATTGGACATATGGGCT
Run BLAST on NCBI

protein sequence of TCONS_00000014-protein

>TCONS_00000014-protein ID=TCONS_00000014-protein|Name=TCONS_00000014-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp
MSSHKAVEHTAANLDGLWTVIAKTRNFDNEVSSSKKAIVVIPGNPGLVEF
YELFMECLYKLKGIPIIGFSHAGHSPIHPYTDEPMRTPPLTLQEQIQHKK
DCVRQFIPDDCNIIFIGHSIGAYIILQLMDHIPERSLHGILLFPTITNMI
GTVDGKFWNLITSYLKLPLLWTAYFSSYLPYALQDVLIRWRAKWRQIDAP
IVPVCRRCVSWDVLSQGFRMVECELVEVKTLNPELSRIIRRYSNKLTVYY
GDGDAWTPFSFYEEFIQKFPEVKTFYGRDGFKHDFVLDSSEGVARLCNKF
IEKL
Run BLAST on NCBI

transcript from alignment at sc0000001:325837..332443+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000014 ID=TCONS_00000014|Name=TCONS_00000014|organism=Clytia hemisphaerica|type=transcript|length=6607bp|location=Sequence derived from alignment at sc0000001:325837..332443+ (Clytia hemisphaerica)
CTTCTAGATCTTCAACCTTCTCTACCTTCTACCAGCACCAGGGTATGTAT CTTCTTTCAGCAGACCTGGACTGGGTGGCAGAGCAGATATTAAATAGATG TAGTAAATTACTATTACTATGNgtattaaaagaaattttttgtcaaagtg ATTTAacagtaaaaagtaaaaatagaccttttttcaaagaggatgtcatg ttgaataattatgtagtccagccataaaaacaatgatatatccatgcata attactgtatcatgcatattgtagtAATTATTCATGGttcatcattgttt ttctgctggactacataattattcaacagggtggcctctttgaaaaaagg tcttaTAGCTATGCTATGGTATGGTGTGAGATtagatgtttttcattttt gttatgtTGGGCAGTTGGGAACTTTACACTTTATTTGGTATATATAAGCT GATTCTAATTACCTACCAcactcttttttgttttttagtagAGAAAAATA ACAGAAAATAGGAAGGTGGGAATCACAGATTGAAAAAGAAGATGCGATCT CTATTCTATCAAAGAAATAAAGTTTCAATCAGCAAATAGTTGTTTGGGAA AACGCAACAGCCTAGGCATTGAGTCAGTTTCGTATACCTATACTAGCTAA ATAACTCCATCCATTCCGGGCTGGAAATGGTGCACAGTATGTGAATATAT TCAGAGTGAGgcagtaccgtcaactgctccactTGGGGgcactatctgac aaaacatgggacggcaattcggccccCATTTCACCGAaactccaaagtca tttgatttgagttaaggaaaggcatattaaaaaatacacaatttctgttt tgattttACAGTTAGTTTATttcagaccagatatgcaacagtcccatgtt tcaaccaattgTGCCAAATTAGAGCCGCTGACGGTAATTACGTTTGGCGT ATTGGCACAAGGAGCCGATATAAAGTAAGATATTGGCGTaagtcaaagct tttcaagacGAGAGAAGCACCCCCATTCTAACGCCCAATTTCATGACGCC GCAGGTTTAAAAATGCATCCACCTAGCTCTCCCTTGACCACCATTGACCA TATATATAAGgccaaaaaaaaagtagttttgtttccggaaatgcgggtga cgaaaaaaaatctcacccgggcggccggaaaatattttttttttcaattt tcctagaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagtttttttctattt gcggccgggtgagatatatttttttccaaaaaaaagttcacccggccgat ttccggaaacaagactacttttttttttggcctaaCANCCTGTTTCTATG AGACGTTTTTTGTGAGCCttcaaaaatgttacaaaacCAGTACTAATTTT TGAAACGGCTCGGCTTTCGGGGGGTTTGCCCCCTAAACCTCCATCAGGGC TAAGCCCTGGACCCGTTTGGGGCACTGGATTACACTGCCCCAAAACCCAG TAATATCGCTGTTCTGTTCTTTTGGCTTAAACCTCAGTTTTAACGNGCAA CTTTTAGGGGTGAGAAAATGAAATAATCCCAGGGCTGAACAGTCATTGTG TGAcattttttaaaacacaaaaaattgacaaaaatctttaaggttgaata aaatcaactcaaattaATTACaagccttgaaattttgactggtAATAGGA AATTTAATtaccttttcaaaaatatatttatgaaGCCATTCTTTATGATA GCAAAACGACTTAGGTACTAAATGAATTACCCTTATATGTTCAAAGTAAA GTATGTCACTCTTTGTcacaatcaattttttgaaaataatgtacacaaaa attaatgtttcaaTACTGCACGTCCTATAACACTCAGTGGTTAAAAATGA ACAACTTTAGGTGTTGATTGTGCCAATAAATGACTTACTTTACgagtaaa aaagtaaaatatgtCATCCTTAAAGTAAGTCACTTTTTGTCACATTTTGC TTCTGGGTATAATTCGAAATATAGTATTTCAATTTaggtaaaaattaaag catTTTAAATTGGGAAATATATCTGGCTTATTAACCATATCAAAAATATA GACACTGTGCACAATGTGCCCTGTTTCTATGAGACGTTTTTTGTGAGCCt tcaaaaatgttacaaaacCAGTACTAATTTTTGAAACGGCTCGGCTTTCG GGGGGTTTGCCACCTAAACCTCCATCATGGCTAAGCCCTGGACCCGTTTG GGGCACTGGATTACACTGCCCCAAAACCCAGTAATATCGCTGTTCTGTTC TTTTGGCTTAAACCTCAGTTTTAACAAATAACAATTCGGTGTGGGCTTTG CATCATTTCCACACTGGCATACATTGGGCCTGGAAATTAACTGTATTGAA TTAACTGATTGTATCAAGTGTTGAGTCTGGGGTATCCCTAGATAGAACTT CTGCTAGTTGAAacgtcatgttgaataattcaaaactccagcattaataa aacaatgataagaaaaaattaataatgTATACTTGAACTAATTAAAATTA TGAATTCAtctgtcattgttttgatgctggattttttaattCTTCAGCAT GAGATCTTAACTAGCAAAATGTCTTGGCATGTCTCCTTTTTCtttaatat atttcaaaaaagtaCAAAGAGTACTAAGGTACAGATTGGAGAGAAATATT CTGCTGTTGAGTAGCATAAAGCAACTGCTGCTTTGTGTATCGTACCAGTG CTTTCAGATCTTAATAAAACTGTTTATCATATACCTTTAACAGGTATATt atacaacaaaatataatGTCATCGCACAAGGCAGTAGAGCATACAGCTGC AAATCTGGATGGTTTATGGACAGTAATAGCAAAAACGAGGAACTTTGATA ATGAAGTTTCATCTTCCAAGAAAGCTATTGTTGTCATTCCTGGTAATCCT GGTTTGGTTGAATTTTATGAATTGTTTATGGAATGTTTGTACAAGTTAAA GGGGATTCCAATTATCGGTTTTTCACATGCAGGTATAAATggatttctct tttttataagaaccattcAATTTTTATTAAGGGTCAGTTACTTTTTTGGA TGTACTTTGAGTCacaaattgtaaattttcaaaaactctcTGCGATTCCA GTCTTTTTCGTAATGTATGGTATTTTTAAGCCTGCCTTACTGTTCTTATA TAAAGTGTGAATactctttttcttaaaattaacATGAAGAGAAAAAGTAA ATCCAATTCTGCTCATCATGTTGTTTCGATGTGATCCTGATGTGAACATC GAAAATCTAAAAGCTAACTAAGCAAGTTTCACCCATTCTCtatcaaatac acgtttttttataataacatccATAATATTTTTAGCCTTTGGGTGTTCTT Ctaagctttttgagtttttaagctgaaaaaaaacgttattaaaatgttct gaattttaaaccattttgtgagtgtttttttcACACTTCCTAACTTGTTC ATAATATCTTGGCCATCAAACCCTTTTgttcatatagtttgttcttatgt gaaacaatgaaacagaaaaaacaaaaacagtttttttgtaCTAATAGTTT CACAACCTTCTTCTGGGTTGATCATCAGCAAactctttttgtttgtttgc tgATGATCAACCCAGAAAAGGATTGCGAAAATATCAgtacaaaaaactgt ttttgtttttttctgtttgacTTAAAAATTTCTACTATGAATAAGAAGAT TCTCCacaagtttgttcttataaaaaacgtgttttcCACATCTCAGGACA TTCACCGATCCACCCATACACAGATGAACCAATGAGAACTCCTCCATTAA CCTTGCAAGAACAAATTCAACACAAGAAGGACTGTGTCCGACAATTCATT CCTGACGACTGCAATATCATCTTTATCGGACATTCCATAGGAGCTTATAT TATTCTACAGCTTATGGACCATATACCAGAAAGGTGAATACACTCTTCTC AAAATAATAAGGGGCAAGGCTTCGGATCCGTAGAATCTTTCGTAGGANat tgtacttaacaacatatccaaaaatgaaaaaaatctaagtttcaaactat tggaactgccccaaactgccccattcttaaaaaaactggctcttaaaaat ttctactatgtatggaGCACTCTANtctttttgtttgtttgctgATGATC AACCCAGAAAAGGATTGCGAAAATATCAgtacaaaaaactgtttttgttt ttttctgtttgacTTAAAAATTTCTACTATGAATAAGAAGATTCTCCaca agtttgttcttataaaaaacgtgttttcCACATCTCAGGACATTCACCGA TCCACCCATACACAGATGAACCAATGAGAACTCCTCCATTAACCTTGCAA GAACAAATTCAACACAAGAAGGACTGTGTCCGACAATTCATTCCTGACGA CTGCAATATCATCTTTATCGGACATTCCATAGGAGCTTATATTATTCTAC AGCTTATGGACCATATACCAGAAAGGTGAATACACTCTTCTCAAAATAAT AAGGGGCAAGGCTTCGGATCCGTAGAATCTTTCGTAGGACACATTCGCGT GTGATTGGTTTGAAAGTAGATAGAATTTCGAGACTTTTTTGAGAAGGGGC ATAAAAGGCTTGGCAACCAAAAGTTTTTAGGGCGATTTTTTATCCCCCGC CAAATAGTAAAATTTGAcgattttttaatgtttttactGAGTTTTGATTC TCCTACttggatttttaaaagttaaaaccctttgttgataattttaaaaa atactttgactTTGAAATAGTTTGTTTGACCTGAAAATATGAAAGATAAT GAAGGAAAAGTGTTTGCTCAAAACTTGTTAACGATTATTCCTAAGATGAT AGTGGAGAGACTATAATACATTTTAACACCTATCTTTTATAGATCGCTTC ATGGTATATTACTCTTCCCCACCATCACGAACATGATTGGAACAGTTGAC GGAAAATTCTGGAATCTGATAACTTCATATCTCAAACTCCCTTTACTATG GACTGCATATTTTTCCTCTTATCTACCTTACGCCCTACAAGATGTTTTGA TACGATGGCGTGCAAAATGGCGGCAAATTGACGCCCCGATCGTACCAGTG TGCAGACGATGTGTCTCTTGGGACGTTTTAAGTCAAGGTTTCCGTATGGT CGAATGTGAGTTAGTAGAAGTCAAAACTTTGAATCCGGAATTATCCCGGA TTATACGACGATATTCCAATAAATTGACGGTTTATTATGGTGACGGTGAC GCATGGACgcctttttctttttatgaggAATTTATACAGAAATTTCCTGA AGTGAAAACTTTCTACGGACGTGATGGTTTTAAACATGATTTTGTACTTG ACTCTTCGGAAGGTGTAGCGAGGCTATGTAATAAGTTTATTGAGAAGTTA TGATAGTTCATGATTATAAGcatcttttacatttttatcataaCCTAGCT TTAACTTCAGATATCCTCTATGTATAAGACACAGATTTGCAGCCGTTATa agtttttttacaatatttggAGGATGTACCGTGTTTCAATCCCGACTTAT GGAAGATTTCGAAAATCGTTAAAACTCATTTTCGGGTCAATAACTTTTTG CCCAAGGTGTAAAAATCGACTCTACCCCACATTCGAAAGcagataaaatt atctttccaacggtgtctAGAAACCTTCTATTCGaattttttctaggttg acTCTATTTTCGACAAAATTCTACAGGACTAAAACTGTAAAAGTTGACAT TccgttttataaaaatatacctTTTCGACTACTAAAATCTATTgctagtt tgagtaaagaaaattaATACTCAAAGTTTTATGCCATTCTTTAGTAGTAT ACTCAAACTAGTATGAAGCTTGTCATTAATATTGATCACTGTTATTAGTT TTCGCTTACACAAGGAATGTATAGAATTTATTCTTGaattttaaatatct ttttggGCGATATCGTGTAACCCTGTATTAATGATTCAATACTCTGACCA CTCTAGAACCATCTATGTAACATGGTCAAAGGAATTTTTGTTTCTAGTTA ATTTTTAAATTGTTATGAGAATTATTAGATGATGATGTTCATGTAAATAG ATGAATTTGtctttaaaacttttatttCGCATTTTATGAGAGattttatt tctgattttttaaattattgcTCGGGTCTAACGGAAATCTTTAGGTCTCT AAAATGGCAATTTAATGCTTCGAAAATACTACCTTTTGACGTGagttttc tcgaattttcaacCATTGGAGACCGAAATAATCGCATGAAAACTCTTAAA TTTGGTATCCCTTAGActctttaagtgccaatgtcgagtATATTGGACAT ATGGGCT

Coding sequence (CDS) from alignment at sc0000001:325837..332443+

>TCONS_00000014 ID=TCONS_00000014|Name=TCONS_00000014|organism=Clytia hemisphaerica|type=CDS|length=2745bp|location=Sequence derived from alignment at sc0000001:325837..332443+ (Clytia hemisphaerica)
atGTCATCGCACAAGGCAGTAGAGCATACAGCTGCAAATCTGGATGGTTT
ATGGACAGTAATAGCAAAAACGAGGAACTTTGATAATGAAGTTTCATCTT
CCAAGAAAGCTATTGTTGTCATTCCTGGTAATCCTGGTTTGGTTGAATTT
TATGAATTGTTTATGGAATGTTTGTACAAGTTAAAGGGGATTCCAATTAT
CGGTTTTTCACATGCAGGACATTCACCGATCCACCCATACACAGATGAAC
CAATGAGAACTCCTCCATTAACCTTGCAAGAACAAATTCAACACAAGAAG
GACTGTGTCCGACAATTCATTCCTGACGACTGCAATATCATCTTTATCGG
ACATTCCATAGGAGCTTATATTATTCTACAGCTTATGGACCATATACCAG
AAAGATCGCTTCATGGTATATTACTCTTCCCCACCATCACGAACATGATT
GGAACAGTTGACGGAAAATTCTGGAATCTGATAACTTCATATCTCAAACT
CCCTTTACTATGGACTGCATATTTTTCCTCTTATCTACCTTACGCCCTAC
AAGATGTTTTGATACGATGGCGTGCAAAATGGCGGCAAATTGACGCCCCG
ATCGTACCAGTGTGCAGACGATGTGTCTCTTGGGACGTTTTAAGTCAAGG
TTTCCGTATGGTCGAATGTGAGTTAGTAGAAGTCAAAACTTTGAATCCGG
AATTATCCCGGATTATACGACGATATTCCAATAAATTGACGGTTTATTAT
GGTGACGGTGACGCATGGACgcctttttctttttatgaggAATTTATACA
GAAATTTCCTGAAGTGAAAACTTTCTACGGACGTGATGGTTTTAAACATG
ATTTTGTACTTGACTCTTCGGAAGGTGTAGCGAGGCTATGTAATAAGTTT
ATTGAGAAGTTATGAatGTCATCGCACAAGGCAGTAGAGCATACAGCTGC
AAATCTGGATGGTTTATGGACAGTAATAGCAAAAACGAGGAACTTTGATA
ATGAAGTTTCATCTTCCAAGAAAGCTATTGTTGTCATTCCTGGTAATCCT
GGTTTGGTTGAATTTTATGAATTGTTTATGGAATGTTTGTACAAGTTAAA
GGGGATTCCAATTATCGGTTTTTCACATGCAGGACATTCACCGATCCACC
CATACACAGATGAACCAATGAGAACTCCTCCATTAACCTTGCAAGAACAA
ATTCAACACAAGAAGGACTGTGTCCGACAATTCATTCCTGACGACTGCAA
TATCATCTTTATCGGACATTCCATAGGAGCTTATATTATTCTACAGCTTA
TGGACCATATACCAGAAAGATCGCTTCATGGTATATTACTCTTCCCCACC
ATCACGAACATGATTGGAACAGTTGACGGAAAATTCTGGAATCTGATAAC
TTCATATCTCAAACTCCCTTTACTATGGACTGCATATTTTTCCTCTTATC
TACCTTACGCCCTACAAGATGTTTTGATACGATGGCGTGCAAAATGGCGG
CAAATTGACGCCCCGATCGTACCAGTGTGCAGACGATGTGTCTCTTGGGA
CGTTTTAAGTCAAGGTTTCCGTATGGTCGAATGTGAGTTAGTAGAAGTCA
AAACTTTGAATCCGGAATTATCCCGGATTATACGACGATATTCCAATAAA
TTGACGGTTTATTATGGTGACGGTGACGCATGGACgcctttttcttttta
tgaggAATTTATACAGAAATTTCCTGAAGTGAAAACTTTCTACGGACGTG
ATGGTTTTAAACATGATTTTGTACTTGACTCTTCGGAAGGTGTAGCGAGG
CTATGTAATAAGTTTATTGAGAAGTTATGAatGTCATCGCACAAGGCAGT
AGAGCATACAGCTGCAAATCTGGATGGTTTATGGACAGTAATAGCAAAAA
CGAGGAACTTTGATAATGAAGTTTCATCTTCCAAGAAAGCTATTGTTGTC
ATTCCTGGTAATCCTGGTTTGGTTGAATTTTATGAATTGTTTATGGAATG
TTTGTACAAGTTAAAGGGGATTCCAATTATCGGTTTTTCACATGCAGGAC
ATTCACCGATCCACCCATACACAGATGAACCAATGAGAACTCCTCCATTA
ACCTTGCAAGAACAAATTCAACACAAGAAGGACTGTGTCCGACAATTCAT
TCCTGACGACTGCAATATCATCTTTATCGGACATTCCATAGGAGCTTATA
TTATTCTACAGCTTATGGACCATATACCAGAAAGATCGCTTCATGGTATA
TTACTCTTCCCCACCATCACGAACATGATTGGAACAGTTGACGGAAAATT
CTGGAATCTGATAACTTCATATCTCAAACTCCCTTTACTATGGACTGCAT
ATTTTTCCTCTTATCTACCTTACGCCCTACAAGATGTTTTGATACGATGG
CGTGCAAAATGGCGGCAAATTGACGCCCCGATCGTACCAGTGTGCAGACG
ATGTGTCTCTTGGGACGTTTTAAGTCAAGGTTTCCGTATGGTCGAATGTG
AGTTAGTAGAAGTCAAAACTTTGAATCCGGAATTATCCCGGATTATACGA
CGATATTCCAATAAATTGACGGTTTATTATGGTGACGGTGACGCATGGAC
gcctttttctttttatgaggAATTTATACAGAAATTTCCTGAAGTGAAAA
CTTTCTACGGACGTGATGGTTTTAAACATGATTTTGTACTTGACTCTTCG
GAAGGTGTAGCGAGGCTATGTAATAAGTTTATTGAGAAGTTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000008XLOC_000008Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000014-exon-sc0000001-1491911889:325837..325878TCONS_00000014-exon-sc0000001-1491911889:325837..325878Clytia hemisphaericaexon
TCONS_00000014-exon-sc0000001-1510915933:325837..325878TCONS_00000014-exon-sc0000001-1510915933:325837..325878Clytia hemisphaericaexon
TCONS_00000014-exon-sc0000001-1491911889:328830..329068TCONS_00000014-exon-sc0000001-1491911889:328830..329068Clytia hemisphaericaexon
TCONS_00000014-exon-sc0000001-1510915933:328830..329068TCONS_00000014-exon-sc0000001-1510915933:328830..329068Clytia hemisphaericaexon
TCONS_00000014-exon-sc0000001-1491911889:330375..330561TCONS_00000014-exon-sc0000001-1491911889:330375..330561Clytia hemisphaericaexon
TCONS_00000014-exon-sc0000001-1510915933:330375..330561TCONS_00000014-exon-sc0000001-1510915933:330375..330561Clytia hemisphaericaexon
TCONS_00000014-exon-sc0000001-1491911889:330979..332443TCONS_00000014-exon-sc0000001-1491911889:330979..332443Clytia hemisphaericaexon
TCONS_00000014-exon-sc0000001-1510915933:330979..332443TCONS_00000014-exon-sc0000001-1510915933:330979..332443Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000014-proteinTCONS_00000014-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:325837..332443 +
Expression

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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.3582 0 0.466006 0.501506 1.40511 1.26789 1.15437 0.639153 3.18242e-07 0 1.87228 0.797121 0.828987 1.09161 0.0110713 1.45418 0 0.580045 0.974812 7.39971e-09 0 0.521195 0.416347 1.93063 3.46186 3.00577 0.33861 0.421603 0 0.0636877
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
IPR019363LDAH
Blast
BLAST of TCONS_00000014 vs. Swiss-Prot (Human)
Match: LDAH (Lipid droplet-associated hydrolase OS=Homo sapiens GN=LDAH PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.026e-26
Identity = 82/283 (28.98%), Postives = 130/283 (45.94%), Query Frame = 2
Query:  146 DNEVSSSKKAIVVIPGNPGLVEFYELFMECLYKL--KGIPIIGFSHAGHSPIHPYTDEPMRTPPLT----------LQEQIQHKKDCVRQFIPDDCNIIFIGHSIGAYIILQLMDHIPERS-LHGILLFPTITNMIGTVDGKFWNLITSYLKLPLLWTAY-FSSYLPYALQDVLIRWRAKWRQIDAPIVPVCRRCVSWDVLSQGFRMVECELVEVKTLNPELSRIIRRYSNKLTVYYGDGDAWTPFSFYEEFIQKFPEVKTFYGRDGFKHDFVLDSSEGVARL 952
            D  V   K  I +IPGNPG   FY  F + LY L  +  P+   SHAGH+ + P   + + T   +          L  QI+HK   +R  +P D  ++ IGHSIG+Y  LQ++  +PE   +   LLFPTI  M  + +G+    +  + +  L  T Y      P  ++ +LIR   +   ++    P+    +    L+    +   E++EV   + E    I+ +  KLT YYG  D W P  +YE+  + FPE           H F+   ++ +A +
Sbjct:   37 DQSVKRPKLLIFIIPGNPGFSAFYVPFAKALYSLTNRRFPVWTISHAGHA-LAPKDKKILTTSEDSNAQEIKDIYGLNGQIEHKLAFLRTHVPKDMKLVLIGHSIGSYFTLQMLKRVPELPVIRAFLLFPTIERMSESPNGRIATPLLCWFRYVLYVTGYLLLKPCPETIKSLLIRRGLQVMNLENEFSPL--NILEPFCLANAAYLGGQEMMEVVKRDDE---TIKEHLCKLTFYYGTIDPWCPKEYYEDIKKDFPEGDIRLCEKNIPHAFITHFNQEMADM 313          
The following BLAST results are available for this feature:
BLAST of TCONS_00000014 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LDAH1.026e-2628.98Lipid droplet-associated hydrolase OS=Homo sapiens... [more]
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