TCONS_00073685-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073685-protein
Unique NameTCONS_00073685-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length620

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073685-protein ID=TCONS_00073685-protein|Name=TCONS_00073685-protein|organism=Clytia hemisphaerica|type=polypeptide|length=620bp
MKTDNKYYEKTMAAMNITICPNGDQYVRKRLVLNRKRIPNLEVLLDNATQ
LIGARNCVRLLRTPNHGTRVRDLDSVVDGGLYVAIVGPSEKLKKLEYNGS
SKPQPKQTHDGGKRKPKIIAQGRAFQEGLAEASRYRIIYIYPNGGDKRTK
ILLDKRLLYSLEKVLQYISDKLRMRTGAVRSIYSTDGHLIKDIASIQNNS
TYVAVGFGQRLIRTSYDGSNKTELLTPRRPVQNKFSGSDSSRKKFGKKIQ
SKEQPNKSPTKSSADTTTNLSSIIDDENDKIDTIDDSIDKLSDRLDDTVN
ESNDFVKNTYTLERLDEFKPSTEFDRARDIIEEDVQSIKREGTFDKVDNT
DIEQDSIDIEKQSKKTKKNSKAFGSSFDKALAKAERSSTIDSVKSTKQDE
NEREKSIEIETKNRKESEKKKTSSKEKGGKITIEKSKNEKKKKSSKKVKK
ITPIPKSPDVSSKSPKIPSKSPEPRSKSPEIGNEEPISRSRRASSIRSNP
TDSLDDATVRKSPENISKSPESLRKSPESATISPISDAEISVSDDEENEK
EENRKSDSPTLYQASGGQSEKAKAVTESKDTKTEKTIDMVPAEEVDEEIE
SEQENEDEDENNGDGRKKSK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045754XLOC_045754Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073685TCONS_00073685Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003533Doublecortin_dom
Vocabulary: Biological Process
TermDefinition
GO:0035556intracellular signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0035556 intracellular signal transduction
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 592..612
NoneNo IPR availableCOILSCoilCoilcoord: 274..294
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 221..271
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 345..620
IPR003533Doublecortin domainSMARTSM00537doub1_11coord: 131..217
e-value: 1.0E-9
score: 48.3
coord: 10..98
e-value: 7.1E-7
score: 38.8
IPR003533Doublecortin domainGENE3D3.10.20.230coord: 4..105
e-value: 3.2E-10
score: 39.2
coord: 127..223
e-value: 7.4E-11
score: 41.3
IPR003533Doublecortin domainPFAMPF03607DCXcoord: 32..84
e-value: 2.0E-9
score: 37.3
coord: 153..207
e-value: 1.7E-11
score: 43.9
IPR003533Doublecortin domainPROSITEPS50309DCcoord: 136..217
score: 15.291
IPR003533Doublecortin domainPROSITEPS50309DCcoord: 15..98
score: 14.987
IPR003533Doublecortin domainSUPERFAMILY89837Doublecortin (DC)coord: 10..105
IPR003533Doublecortin domainSUPERFAMILY89837Doublecortin (DC)coord: 134..217

Blast
[Close]
BLAST of TCONS_00073685-protein vs. Swiss-Prot (Human)
Match: DCDC2 (Doublecortin domain-containing protein 2 OS=Homo sapiens GN=DCDC2 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 4.284e-21
Identity = 75/233 (32.19%), Postives = 119/233 (51.07%), Query Frame = 0 
Query:   17 ITICPNGDQ-YVRKRLVLNRKRIPNLEVLLDNATQLIGA-RNCVRLLRTPNHGTRVRDLDSVVDGGLYVAIVGPSEKLKKLEYN--GSSKPQPKQTHDGGKRKPKI---IAQGRAFQEGLAEASRYRIIYIYPNGG--DKRTKILLDKRLLYSLEKVLQYISDKLRMRTGAVRSIYSTDGHLIKDIASIQNNSTYVAVGFGQRLIRTSYDGSNKTELL----TPRRPVQNKFS 236
            + +  NGD  Y  +R+V++ K++ + EV L   T  + A    VR + TP  G R+R LD +  GG YVA  G  E  KKL Y   G  K +P +  +  + KP I   I     F++ L E      I++  NG   +  +++L+ ++ L   + VLQ +++K+ +R+GAV  +Y+ +G L++  A ++N   YVAVG      R  +     +ELL    T RRP   K S
Sbjct:   19 VLVYRNGDPFYAGRRVVIHEKKVSSFEVFLKEVTGGVQAPFGAVRNIYTPRTGHRIRKLDQIQSGGNYVA--GGQEAFKKLNYLDIGEIKKRPMEVVNT-EVKPVIHSRINVSARFRKPLQEPC---TIFLIANGDLINPASRLLIPRKTLNQWDHVLQMVTEKITLRSGAVHRLYTLEGKLVESGAELENGQFYVAVG------RDKFKKLPYSELLFDKSTMRRPFGQKAS 239
The following BLAST results are available for this feature:
BLAST of TCONS_00073685-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCDC24.284e-2132.19Doublecortin domain-containing protein 2 OS=Homo s... [more]
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