TCONS_00073684-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073684-protein
Unique NameTCONS_00073684-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length359

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073684-protein ID=TCONS_00073684-protein|Name=TCONS_00073684-protein|organism=Clytia hemisphaerica|type=polypeptide|length=359bp
MAEQLGGKRRYDFGGEIVDGPGNGQLVAAKKSRNEVELYNDQQKSLLSVP
RSSGLTAPIMLLTGQESEIFCGRFHPSGKTLASAGFDRLVYLWNVYGECE
NFAILKGHSGAILDMHWMYDGDTLVTSSSDKTIALWDYETGAKVKKFKGH
TSFVNSCCPVRRGPELVVSGSDDGEIKLWDRRKKTAVQTFMNKFPVTAVC
FNDNATQIVSGGIDNIIKVWDLRKNDVMFRMTGHTDTPTGLRLSPDGSFV
LSNAMDNTVRIWDIRAFAPPERCLKVFTGVHHNFEKNLLKCAWSPDGRYI
SAASSDRFVYVWDTVTRKILYKLPGHNGSVNDVDFHPTEPILLSAGSDKK
IFLGELFAT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045753XLOC_045753Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073684TCONS_00073684Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 208..222
score: 37.18
coord: 167..181
score: 40.95
coord: 250..264
score: 33.48
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 183..221
e-value: 2.7E-6
score: 36.9
coord: 140..180
e-value: 2.3E-8
score: 43.8
coord: 55..94
e-value: 1.6E-5
score: 34.3
coord: 224..263
e-value: 3.5E-6
score: 36.5
coord: 98..137
e-value: 1.3E-7
score: 41.3
coord: 316..355
e-value: 9.9E-6
score: 35.0
coord: 270..313
e-value: 3.4E-5
score: 33.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 101..137
e-value: 5.6E-5
score: 23.7
coord: 231..263
e-value: 2.1E-5
score: 25.1
coord: 272..313
e-value: 3.3E-5
score: 24.5
coord: 60..94
e-value: 0.0078
score: 17.0
coord: 318..352
e-value: 2.7E-4
score: 21.6
coord: 195..221
e-value: 4.6E-4
score: 20.8
coord: 143..180
e-value: 2.8E-6
score: 27.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 231..265
score: 14.652
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 147..189
score: 11.244
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 292..322
score: 10.508
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 323..359
score: 10.275
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 62..95
score: 11.244
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 105..146
score: 15.388
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 196..230
score: 11.845
NoneNo IPR availableGENE3D2.80.10.50coord: 22..139
e-value: 1.4E-23
score: 82.6
NoneNo IPR availableGENE3D1.10.10.670coord: 218..284
e-value: 1.8E-15
score: 56.1
NoneNo IPR availablePIRSFPIRSF002394GNBP_Bcoord: 60..193
e-value: 9.3E-27
score: 91.6
coord: 146..356
e-value: 5.1E-46
score: 154.9
coord: 23..105
e-value: 4.7E-4
score: 16.9
NoneNo IPR availableGENE3D2.40.50.140coord: 182..217
e-value: 4.6E-13
score: 48.1
coord: 140..181
e-value: 2.5E-17
score: 61.8
coord: 316..356
e-value: 4.2E-12
score: 45.0
NoneNo IPR availableGENE3D2.80.10.50coord: 285..315
e-value: 6.6E-8
score: 32.2
NoneNo IPR availableCDDcd00200WD40coord: 62..351
e-value: 2.46701E-74
score: 233.381
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 81..95
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 208..222
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 300..314
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 62..359
score: 54.233
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 58..352

Blast
[Close]
BLAST of TCONS_00073684-protein vs. Swiss-Prot (Human)
Match: SNR40 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1)

HSP 1 Score: 461.84 bits (1187), Expect = 9.235e-164
Identity = 211/343 (61.52%), Postives = 269/343 (78.43%), Query Frame = 0 
Query:   26 LVAAKKSRNEVEL-------YNDQQKS---LLSV--PRSSGLTAPIMLLTGQESEIFCGRFHPSGKTLASAGFDRLVYLWNVYGECENFAILKGHSGAILDMHWMYDGDTLVTSSSDKTIALWDYETGAKVKKFKGHTSFVNSCCPVRRGPELVVSGSDDGEIKLWDRRKKTAVQTFMNKFPVTAVCFNDNATQIVSGGIDNIIKVWDLRKNDVMFRMTGHTDTPTGLRLSPDGSFVLSNAMDNTVRIWDIRAFAPPERCLKVFTGVHHNFEKNLLKCAWSPDGRYISAASSDRFVYVWDTVTRKILYKLPGHNGSVNDVDFHPTEPILLSAGSDKKIFLGEL 356
            LV  K+ R+E+ L          QQ +   LL    PR S L APIMLL+G E E++C +FHP+G TLASAGFDRL+ LWNVYG+C+N+A LKGHSGA++++H+  DG  L ++S+DKT+A+WD ETG +VK+ KGHTSFVNSC P RRGP+LV +GSDDG +KLWD RKK A+QTF N + V AV FND + QI+SGGIDN IKVWDLR+N + + M GH D+ TGL LS +GS++LSNAMDNTVR+WD+R FAP ERC+K+F G  HNFEKNLL+C+WSPDG  I+A S+DRFVYVWDT +R+ILYKLPGH GS+N+V FHP EPI++SA SDK++++GE+
Sbjct:   14 LVPVKRQRHELLLGAGSGPGAGQQQATPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASSDKRLYMGEI 356
The following BLAST results are available for this feature:
BLAST of TCONS_00073684-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNR409.235e-16461.52U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
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