TCONS_00073462-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00073462-protein
Unique Name	TCONS_00073462-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	562

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00073462-protein ID=TCONS_00073462-protein|Name=TCONS_00073462-protein|organism=Clytia hemisphaerica|type=polypeptide|length=562bp
MNRYHQARTLEKRVKLYKAQEQESGGEPAWKDLGVGDINIVPNSDSDYFR
SNYYGGMIMLMNSEEDGSVIFRNPVSTRVQYQEQGDVIILWTEVDGPKET
FALSFMDQENRDDFLTHIEETKLKLERSDKNGDAYKGLDDQDFDMHGQGL
GMDLSSEESLAIPPCEFSKLNALNETLQRYLQSKNLHDDLVTLLEAQGYI
PKLIEIFHMCEDLENTDALHTLYSIFKTLFMLEKNAIFETMFSQEYILDI
VGILEYDPSKTTRTPHREHINDRVQFKEVIPIANKELLAKIHQTFRVQYI
KDILIPVPLIFDETGTTLSSFIFFNKVQIIDLIKEDQHFLDELFEQLTND
EVSDDKRKDIILLLKELCVYSQSLQPARREEFIKMLANIGMLQSIEQLLN
IDDKDIQQALIDIVCTITECTPSIIRIYVCREASYTIDEDTMMLNVMISH
LVNCETEGMSVILLQTLQTLLDPENMCQTANSTIERSEFLSFFYRHNMHV
LTSPVLAVTATDELVGKDDFQRATVFDNIVNLLTFCVEHHQSSIKNYIVS
KDMLRRVLVLLX

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045595	XLOC_045595	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00073462	TCONS_00073462	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR006887	DUF625
IPR011993	PH_dom-like
IPR000156	Ran_bind_dom
IPR016024	ARM-type_fold

Vocabulary: **Biological Process**
Term	Definition
GO:0046907	intracellular transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046907	intracellular transport
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 332..561 e-value: 5.9E-4 score: 18.7
IPR006887	Domain of unknown function DUF625	PFAM	PF04802	SMK-1	coord: 197..386 e-value: 1.1E-67 score: 227.6
IPR011993	PH domain-like	GENE3D	2.30.29.30		coord: 6..133 e-value: 3.8E-14 score: 52.3
IPR011993	PH domain-like	SUPERFAMILY	50729	PH domain-like	coord: 10..121
IPR000156	Ran binding domain	PROSITE	PS50196	RANBD1	coord: 1..127 score: 9.689
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 317..429

Blast

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BLAST of TCONS_00073462-protein vs. Swiss-Prot (Human)
Match: P4R3A (Serine/threonine-protein phosphatase 4 regulatory subunit 3A OS=Homo sapiens GN=PPP4R3A PE=1 SV=1)

HSP 1 Score: 427.172 bits (1097), Expect = 1.422e-140
Identity = 236/566 (41.70%), Postives = 353/566 (62.37%), Query Frame = 0

Query:   12 KRVKLYKAQEQESGGEPAWKDLGVGDINIVPNSDSDYFRSNYYGGMIMLMNSEEDGSVIFRNPVSTRVQYQEQGDVIILWTEVDGPKETFALSFMDQENRDDFLTHIEETKLKLERSDKNGDAYKGLDDQDFDMHGQGLGMDLSSEESLAIPPCEFSKLNALNETLQRYLQSKNLHDDLVTLLEAQGYIPKLIEIFHMCEDLENTDALHTLYSIFKTLFMLEKNAIFETMFSQEYILDIVGILEYDPSKTTRTPHREHINDRVQFKEVIPIANKELLAKIHQTFRVQYIKDILIPVPLIFDETG-TTLSSFIFFNKVQIIDLIKEDQHFLDELFEQLTNDEVSDDKRKDIILLLKELCVYSQSLQPARREEFIKMLANIGMLQSIEQLLNIDDKDIQQALIDIVCTITECTPSIIRIYVCREASYTID------------EDTMMLNVMISHLVNCETE---GMSVILLQTLQTLLDPENMCQTANSTIERSEFLSFFYRHNMHVLTSPVLAVTATDELVGKDDFQRATVFDNIVNLLTFCVEHHQSSIKNYIVSKDMLRRVLVLL 561
            +RVK+Y   E        W D G G ++      S Y       GM +L+ +E DGS++  + ++    YQ+Q D +I+W+E +      ALSF ++   D+    I + + K    D   D     +++ FD        D+SS   L +P CE S+L  + E +   L S    + L   LE +GYI KL+E+FH+CEDLEN + LH LY I K +F+L + A+FE MFS+E I+D++G LEYDP+ +    HRE +    +FKEVIPI++ EL  KIHQT+RVQYI+D+++P P +F+E   +TL SFIFFNKV+I+ +++ED+ FL +LF QLT++   ++KR++++  LKE C +SQ+LQP  R+ F K L+N+G+L ++E +L +DD  ++ A  DI   + E  PS++R +V +EA    D            +D +++N++I H++ C+T+   G +V L+  L+TL+DPENM  TAN T E++EFL FFY+H MHVLT+P+LA T  D+   KDDFQ A +   ++ LLTFCVEHH   IKNYI++KD+LRRVLVL+
Sbjct:    6 RRVKVYTLNEDRQ-----WDDRGTGHVS------SGYVER--LKGMSLLVRAESDGSLLLESKINPNTAYQKQQDTLIVWSEAEN--YDLALSFQEKAGCDEIWEKICQVQGKDPSVDITQDLVDESEEERFD--------DMSSP-GLELPSCELSRLEEIAELVASSLPSPLRREKLALALENEGYIKKLLELFHVCEDLENIEGLHHLYEIIKGIFLLNRTALFEVMFSEECIMDVIGCLEYDPALSQPRKHREFLTKTAKFKEVIPISDPELKQKIHQTYRVQYIQDMVLPTPSVFEENMLSTLHSFIFFNKVEIVGMLQEDEKFLTDLFAQLTDEATDEEKRQELVNFLKEFCAFSQTLQPQNRDAFFKTLSNMGILPALEVILGMDDTQVRSAATDIFSYLVEYNPSMVREFVMQEAQQNDDVSKKLTEQKITSKDILLINLIIEHMI-CDTDPELGGAVQLMGLLRTLVDPENMLATANKT-EKTEFLGFFYKHCMHVLTAPLLANTTEDK-PSKDDFQTAQLLALVLELLTFCVEHHTYHIKNYIINKDILRRVLVLM 544

The following BLAST results are available for this feature:

BLAST of TCONS_00073462-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00073462-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
P4R3A	1.422e-140	41.70	Serine/threonine-protein phosphatase 4 regulatory ...	[more]

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TCONS_00073462-protein (polypeptide) - C. hemisphaerica

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