TCONS_00073458-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073458-protein
Unique NameTCONS_00073458-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length539

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073458-protein ID=TCONS_00073458-protein|Name=TCONS_00073458-protein|organism=Clytia hemisphaerica|type=polypeptide|length=539bp
MSSTMFLSFNAPIVKRLLQYKVGNGEDVWSEKAIKSLVKKLKKNGGLQEL
EKAVINQGNNGSTECVTIPRSLDGRLQVSHRKGLPHVIYCRLWRWADLQS
HHELRAIDSCTYAFNLKRDYVCVNPYHYLRVETPVMPPILVPRQPRAGAD
STATKAEVKEETKSTETFHTPDNKTIEDESLLSPVSQTLSIPSLPSNPQS
PVASPSMNTNQNNFQAPQSVAQQSPSDDQQSFPQQQQQQQFQQPMQWSSN
NTTEHSPAQQNNTTQPQDALQRQLSSQSQSQAQSPLSDLSDCLSTPGSLF
SPASISGASCMTDIEPMNFNNILTPPNQEIVPDDFDAVLYEEPDEWCSIN
YNELRQRTGDTFSGTRPVLTVDGYTDPSNTDRFCLGLLSNPNRTDDIEES
RRHIGKGVRLYYFGGEVFAECVSDSSIFVQSSNCNRRYGWHPATVCKVPS
GCNLKIFNNQEFAKLLADSVHLGFHNVYQLKSMCMIRLSFVKGWGADYRR
QTVTSTPCWIEIRLNGPLKWLDKVLVQMGAPGDRVSSNS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045593XLOC_045593Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073458TCONS_00073458Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003619MAD_homology1_Dwarfin-type
IPR001132SMAD_dom_Dwarfin-type
IPR013019MAD_homology_MH1
IPR017855SMAD_dom-like
IPR008984SMAD_FHA_domain
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005667transcription factor complex
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0007179transforming growth factor beta receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0007179 transforming growth factor beta receptor signaling pathway
cellular_component GO:0005622 intracellular
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0005515 protein binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
ZOOM
x 1
POSITION
0
50100150200250300350400450500Expect = 2.6E-85 / Score = 299.4Expect = 1.6E-68 / Score = 230.5Score = 66.456Expect = 2.4E-58 / Score = 195.4Score = 35.091Score = Expect = 1.0E-90 / Score = 302.2Score = Score = SequenceSM00523PF03165SM00524PF03166PS51076G3DSA:3.90.520.10PS51075SSF56366G3DSA:2.60.200.10mobidb-litecd10491SSF49879
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003619MAD homology 1, Dwarfin-typeSMARTSM00523dwAneu5coord: 25..135
e-value: 1.4E-58
score: 210.6
IPR003619MAD homology 1, Dwarfin-typePFAMPF03165MH1coord: 31..132
e-value: 6.6E-40
score: 135.4
IPR001132SMAD domain, Dwarfin-typeSMARTSM00524dwBultra2coord: 344..515
e-value: 2.6E-85
score: 299.4
IPR001132SMAD domain, Dwarfin-typePFAMPF03166MH2coord: 345..515
e-value: 1.6E-68
score: 230.5
IPR001132SMAD domain, Dwarfin-typePROSITEPS51076MH2coord: 346..539
score: 66.456
IPR013019MAD homology, MH1GENE3D3.90.520.10coord: 1..145
e-value: 2.4E-58
score: 195.4
IPR013019MAD homology, MH1PROSITEPS51075MH1coord: 12..137
score: 35.091
IPR013019MAD homology, MH1SUPERFAMILY56366SMAD MH1 domaincoord: 13..132
IPR017855SMAD domain-likeGENE3D2.60.200.10coord: 337..539
e-value: 1.0E-90
score: 302.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 139..290
NoneNo IPR availableCDDcd10491MH1_SMAD_2_3coord: 12..133
e-value: 1.93837E-76
score: 238.198
IPR008984SMAD/FHA domainSUPERFAMILY49879SMAD/FHA domaincoord: 317..529

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073458-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
MSSTMFLSFNAPIVKRLLQYKVGNGEDVWSEKAIKSLVKKLKKNGGLQELEKAVINQGNNGSTECVTIPRSLDGRLQVSHRKGLPHVIYCRLWRWADLQSHHELRAIDSCTYAFNLKRDYVCVNPYHYLRVETPVMPPILVPRQPRAGADSTATKAEVKEETKSTETFHTPDNKTIEDESLLSPVSQTLSIPSLPSNPQSPVASPSMNTNQNNFQAPQSVAQQSPSDDQQSFPQQQQQQQFQQPMQWSSNNTTEHSPAQQNNTTQPQDALQRQLSSQSQSQAQSPLSDLSDCLSTPGSLFSPASISGASCMTDIEPMNFNNILTPPNQEIVPDDFDAVLYEEPDEWCSINYNELRQRTGDTFSGTRPVLTVDGYTDPSNTDRFCLGLLSNPNRTDDIEESRRHIGKGVRLYYFGGEVFAECVSDSSIFVQSSNCNRRYGWHPATVCKVPSGCNLKIFNNQEFAKLLADSVHLGFHNVYQLKSMCMIRLSFVKGWGADYRRQTVTSTPCWIEIRLNGPLKWLDKVLVQMGAPGDRVSSNS50100150200250300350400450500Expect = 1.11e-160 / Id = 48.69SequenceSMAD9
Match NameE-valueIdentityDescription
SMAD91.108e-16048.69Mothers against decapentaplegic homolog 9 OS=Homo ... [more]
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