TCONS_00073448-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00073448-protein
Unique Name	TCONS_00073448-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	375

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00073448-protein ID=TCONS_00073448-protein|Name=TCONS_00073448-protein|organism=Clytia hemisphaerica|type=polypeptide|length=375bp
MIDEDSNLTEPEKDDAGSCDEGGNTIEISARLISNKNQDSEKEDENEGTA
KDEDEHEEGSDDNDDGSEDDDDDDEDEDSEDSDSLGEEEAETRKTQYVTD
MSDLEKQFSDLKEQLYKEQISQIESQLKEVNSSEAKEYTGPLKQIEQECI
IRTEVAWQLKHYRTINLENKLQCELQAAEQHFQNQERQVYDTIASDFEDK
LKKVEEERHTSEMYSGNTQDLWCEDTFRSRKKRNKGMEIHVPEKRKKPAT
VTGPYVIYMLNEMDILEDWAAIRKAKSELARRKALELSSQDRDPLITARY
EDGKFFYENEWFQKGDSVVLDNRIDSPVQVTIAGINTGEVWVSKTDGVKC
KLYIAQFQKGKYVISRGLPTVDEII

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045586	XLOC_045586	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00073448	TCONS_00073448	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013907	Sds3

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 87..114
None	No IPR available	COILS	Coil	Coil	coord: 168..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..99
IPR013907	Sds3-like	SMART	SM01401	Sds3_2	coord: 97..271 e-value: 3.6E-38 score: 142.8
IPR013907	Sds3-like	PFAM	PF08598	Sds3	coord: 99..230 e-value: 1.1E-13 score: 51.6

Blast

[Close]

BLAST of TCONS_00073448-protein vs. Swiss-Prot (Human)
Match: BRM1L (Breast cancer metastasis-suppressor 1-like protein OS=Homo sapiens GN=BRMS1L PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 4.271e-76
Identity = 130/325 (40.00%), Postives = 208/325 (64.00%), Query Frame = 0

Query:   46 NEGTAKDEDEHEEGSDD---NDDGSEDDDDDDEDEDSEDSDS--LGEEEAETRKTQYVTDMSDLEKQFSDLKEQLYKEQISQIESQLKEVNSSEAKEYTGPLKQIEQECIIRTEVAWQLKHYRTINLENKLQCELQAAEQHFQNQERQVYDTIASDFEDKLKKVEEERHTSEMYSGNTQDLWCEDTFRSRKKRNKGMEIHVPEKRKKPATVTGPYVIYMLNEMDILEDWAAIRKAKSELA-RRKALELSSQDRDPLITARYEDGKFFYENEWFQKGDSVVLDNRIDSPVQVTIAGINTGEVWVSKTDGVKCKLYIAQFQKGKYVI 364
            + G  K+ + H+E   D   N+  S +D+D +    SED DS  + +E+ E R+ + + +MS+LEKQF+DLK+QLYKE++SQ++++L+EV + +A EY  PL  +++   IRT+VA   +     +++NK +CE+QA+ QH ++++  +YDT+ S+ E+K++++EE+RH+ ++    T +LW  D  +SRKKR        P+K KKP  V+GPY++YML ++DILEDW  IRKA + L   R   E   +    L +AR E+G+ +Y+ EW+ +G ++ +D + + P    I  IN  EVW  + DG K KLYI+Q QKGKY I
Sbjct:    5 SRGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRMECLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVAGIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDI----TSELW-NDELQSRKKRKDPFS---PDK-KKPVVVSGPYIVYMLQDLDILEDWTTIRKAMATLGPHRVKTEPPVKLEKHLHSARSEEGRLYYDGEWYIRGQTICIDKKDECPTSAVITTINHDEVWFKRPDGSKSKLYISQLQKGKYSI 320

The following BLAST results are available for this feature:

BLAST of TCONS_00073448-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00073448-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
BRM1L	4.271e-76	40.00	Breast cancer metastasis-suppressor 1-like protein...	[more]

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TCONS_00073448-protein (polypeptide) - C. hemisphaerica