TCONS_00073442-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00073442-protein
Unique Name	TCONS_00073442-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	768

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00073442-protein ID=TCONS_00073442-protein|Name=TCONS_00073442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=768bp
MMCLRFVLDYIMIRLSFPAWRQHFFVLFKNHTVFNLKCNLTNKEISSNMG
VSCKNCGGTEIDHDQARGDSVCVGCGSVVESLCIVNEVEFQENSAGNASV
IGQFVSAEGHHSRAGYKYSLGRDHRQVILDNGKRLINQLGSNLKMTNHCL
ESAFMFYKMAVSKRFTSGRRTIHVIGACLYLVSRTEKTPHMLLDVCDVVQ
CDVVTLGRVFLQLARELCIDCPIVDPSLYIHRFAHQLDFGEKENEVSMSA
LRIMARMKKDWIHFGRRPSALCGAALIIAAKLYNFEVTMKDIVKLVRMSK
TTVFKRLMDFSKTATGKLTTDEFKTVDLEEEADPPCYTEGRNRVKFAQEI
SGQYHFVSTDVLAQVTRTQEKLEELLDKRKNIQFDIEDTKSESKAFDYRK
ELPRDYSLYSYELDENGEFKTPSKFIIHKEEGGVKKPPENEEPSSSSSEK
DENDELNQMKGTVASSTLIIDQSRIQKVKCDEKKQLKEESNQGNQNNNSD
EIDLDGINDDEIDMLLLTEEEIKIKTEVWLEENREYLIKMKEKEEEQRRK
EEEENKDGIKKKKRKYKRKNNKDRPVCETADEAIKTMLAERKLSSKINYD
VLRGLKSEDNIPGYEENEPSIVPKVEMPSADISMVTGRSEVEESMPVVYE
TGSTLATSKRAVSKRSKSMSGPIFGTAYQSKKFKTETKVNLPSSSVGKED
KTSELDVDEKPLETVVESGPVQHHNEAQNHEYEDEEEEIVTASSLFAKQM
DCDEDYGGFDDEDDGSFY

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045584	XLOC_045584	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00073442	TCONS_00073442	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000812	TFIIB
IPR013763	Cyclin-like
IPR011665	BRF1_TBP-bd_dom
IPR013137	Znf_TFIIB
IPR013150	TFIIB_cyclin

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated
GO:0070897	DNA-templated transcriptional preinitiation complex assembly

Vocabulary: **Molecular Function**
Term	Definition
GO:0017025	TBP-class protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070897	DNA-templated transcriptional preinitiation complex assembly
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0017025	TBP-class protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 533..569
None	No IPR available	COILS	Coil	Coil	coord: 365..392
None	No IPR available	GENE3D	2.20.25.10		coord: 42..95 e-value: 7.9E-7 score: 27.8
None	No IPR available	GENE3D	1.20.5.650		coord: 487..546 e-value: 3.3E-14 score: 51.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 429..456
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 685..738
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 540..575
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 481..507
None	No IPR available	CDD	cd00043	CYCLIN	coord: 225..297 e-value: 2.99337E-6 score: 44.9221
None	No IPR available	CDD	cd00043	CYCLIN	coord: 136..192 e-value: 5.82606E-5 score: 41.0701
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 48..96
IPR000812	Transcription factor TFIIB	PRINTS	PR00685	TIFACTORIIB	coord: 65..85 score: 37.46 coord: 202..217 score: 28.75 coord: 176..195 score: 29.0 coord: 266..282 score: 33.33
IPR013763	Cyclin-like	SMART	SM00385	cyclin_7	coord: 228..312 e-value: 0.0088 score: 25.2 coord: 134..215 e-value: 1.9E-6 score: 37.4
IPR013763	Cyclin-like	GENE3D	1.10.472.10		coord: 225..333 e-value: 5.6E-21 score: 74.1
IPR013763	Cyclin-like	GENE3D	1.10.472.10		coord: 128..224 e-value: 3.2E-19 score: 68.2
IPR013763	Cyclin-like	SUPERFAMILY	47954	Cyclin-like	coord: 132..222
IPR013763	Cyclin-like	SUPERFAMILY	47954	Cyclin-like	coord: 223..328
IPR011665	Brf1, TBP-binding domain	PFAM	PF07741	BRF1	coord: 505..606 e-value: 3.7E-26 score: 91.3
IPR013137	Zinc finger, TFIIB-type	PFAM	PF08271	TF_Zn_Ribbon	coord: 53..92 e-value: 5.8E-9 score: 35.2
IPR013137	Zinc finger, TFIIB-type	PROSITE	PS51134	ZF_TFIIB	coord: 49..80 score: 8.891
IPR013150	Transcription factor TFIIB, cyclin-like domain	PFAM	PF00382	TFIIB	coord: 136..206 e-value: 8.7E-12 score: 44.8 coord: 230..303 e-value: 2.4E-11 score: 43.4

Blast

[Close]

BLAST of TCONS_00073442-protein vs. Swiss-Prot (Human)
Match: TF3B (Transcription factor IIIB 90 kDa subunit OS=Homo sapiens GN=BRF1 PE=1 SV=1)

HSP 1 Score: 432.18 bits (1110), Expect = 1.328e-141
Identity = 287/735 (39.05%), Postives = 409/735 (55.65%), Query Frame = 0

Query:   50 GVSCKNCGGTEIDHDQARGDSVCVGCGSVVESLCIVNEVEFQENSAGNASVIGQFVSAEGHHSR----AGYKYSLGRDHRQVILDNGKRLINQLGSNLKMTNHCLESAFMFYKMAVSKRFTSGRRTIHVIGACLYLVSRTEKTPHMLLDVCDVVQCDVVTLGRVFLQLARELCIDCPIVDPSLYIHRFAHQLDFGEKENEVSMSALRIMARMKKDWIHFGRRPSALCGAALIIAAKLYNFEVTMKDIVKLVRMSKTTVFKRLMDFSKTATGKLTTDEFKTVDLEEEADPPCYTEGRNRVKFAQEISGQYHFVSTDVLAQVTRTQEKLEELLDKRKNIQ--FDIEDTKSESKAFDYRKELPRDYSLYSYELDENGEFKTP-----------SKFIIHKEEGGVKKPPENEEPSSSSSEKDENDELNQMKGTVASSTLIIDQSRIQKVKCDEKKQLKEESNQGNQNNNSDEIDLDGINDDEIDMLLLTEEEIKIKTEVWLEENREYLIKMKEKEEEQRRKEEEENKDGIKKKKRKYKRKNNKDRPVCETADEAIKTMLAERKLSSKINYDVLRGLKSE-DNIPGYEENEPSIVPKVEMPSADISMVTGRSEVEESMPVVYETGSTLATSKRAVSKRSKSMSGPIFGTAYQSKKFKTETKVNLPSS-SVGKEDKTSELDVDEKPLETVVESGPVQHHNEAQNHEYEDEEEEIVTASSLFAKQMDCDEDYGGFDDEDDG 765
            G  C+ CGGT+I+ D ARGD+VC  CGSV+E   IV+EV+F E+S G +S +GQFVS +G         G+  +LG++ R   L NG+R I+ LG+ L++  HCL++AF F+KMAVS+  T GR+  HVI ACLYLV RTE TPHMLLD+ D++Q +V  LG+ FL LARELCI+ P +DP LYI RFAH L+FGEK +EVSM+ALR++ RMK+DW+H GRRPS LCGAAL++AA++++F  T+K+++ +V++ ++T+ KRL +F  T T +LT DEF  +DLEEE DPP YT G+ +++  Q             L QV    +KLEE+  +  + Q   +IE   S  KA      L +D S         GE  T            +K +  +  GG    P + E + S         L  +   + ++  +     I++    +    K+ S  G       E+DL GI+D EID  +L E E ++K E+W+ EN EYL + +EKE     +  +E + GI K+ +  K    ++     TA EAI+ ML ++K+SSKINY VLRGL S     P  E+ +P      E  ++   +   R+    S       G+   TS   V KR +    P+  T   +KK  T   + LPSS ++G E          +P   +VESGPV +H + +  E E +EE+     S  A QM    DYG   DEDDG
Sbjct:    3 GRVCRGCGGTDIELDAARGDAVCTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQTLQNGRRHIHHLGNQLQLNQHCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQ-------------LEQV--LSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGSTEDTASSLCGEEDTEDEELEAAASHLNKDLYRELLGGA---PGSSEAAGSPEWGGRPPALGSLLDPLPTAASLGISDSIRECISSQSSDPKDASGDG-------ELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEA----RIAKEKELGIYKEHKPKKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGLSSAGGGSPHREDAQP------EHSASARKLSRRRTPASRS-------GADPVTS---VGKRLR----PLVST-QPAKKVATGEAL-LPSSPTLGAEPA--------RPQAVLVESGPVSYHADEEADEEEPDEEDGEPCVS--ALQMMGSNDYGCDGDEDDG 676

The following BLAST results are available for this feature:

BLAST of TCONS_00073442-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00073442-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TF3B	1.328e-141	39.05	Transcription factor IIIB 90 kDa subunit OS=Homo s...	[more]

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TCONS_00073442-protein (polypeptide) - C. hemisphaerica