TCONS_00073414-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073414-protein
Unique NameTCONS_00073414-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length252

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073414-protein ID=TCONS_00073414-protein|Name=TCONS_00073414-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
MVKLTADLIEIAPQYTNPLRDREIDLRGNKISVIENLGATLDQFDCIDIS
DNDVKKLESFPLLKRLKMLICNNNRICRFEENLEESLPALEDLVLSNNNV
QELIDLDPLSTIKSLRSVCFLRNPVANKQNYRLYLIFKIPQLRVVDFKRI
KDKERSAANRLFKSKKGEILQKDIAAKRSKTFEVKDIQPTQEDVEFLAQK
YKDQEAIKEAISKATTLEEVRKLELLLQQGHVPGKTGDGDNQNEDEEEME
TA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045559XLOC_045559Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073414TCONS_00073414Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 1..176
e-value: 1.8E-25
score: 88.4
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 4..153
NoneNo IPR availablePFAMPF14580LRR_9coord: 1..175
e-value: 2.3E-79
score: 264.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 228..252
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 20..41
score: 6.033
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 43..64
score: 5.533
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 65..86
score: 4.816
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 89..110
score: 7.65

Blast
[Close]
BLAST of TCONS_00073414-protein vs. Swiss-Prot (Human)
Match: RU2A (U2 small nuclear ribonucleoprotein A' OS=Homo sapiens GN=SNRPA1 PE=1 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 3.760e-93
Identity = 138/235 (58.72%), Postives = 180/235 (76.60%), Query Frame = 0 
Query:    1 MVKLTADLIEIAPQYTNPLRDREIDLRGNKISVIENLGATLDQFDCIDISDNDVKKLESFPLLKRLKMLICNNNRICRFEENLEESLPALEDLVLSNNNVQELIDLDPLSTIKSLRSVCFLRNPVANKQNYRLYLIFKIPQLRVVDFKRIKDKERSAANRLFKSKKGEILQKDIAAKRSKTFEVKDIQPTQEDVEFLAQKYKDQEAIKEAISKATTLEEVRKLELLLQQGHVPGK 235
            MVKLTA+LIE A QYTN +RDRE+DLRG KI VIENLGATLDQFD ID SDN+++KL+ FPLL+RLK L+ NNNRICR  E L+++LP L +L+L+NN++ EL DLDPL+++KSL  +  LRNPV NK++YRLY+I+K+PQ+RV+DF+++K KER  A ++FK K+G  L KDI A+RSKTF      PT  D +       D EAIK AI+ A+TL EV +L+ LLQ G +PG+
Sbjct:    1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDI-ARRSKTFNPGAGLPT--DKKKGGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGR 232
The following BLAST results are available for this feature:
BLAST of TCONS_00073414-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RU2A3.760e-9358.72U2 small nuclear ribonucleoprotein A' OS=Homo sapi... [more]
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