TCONS_00073403-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00073403-protein
Unique Name	TCONS_00073403-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	436

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00073403-protein ID=TCONS_00073403-protein|Name=TCONS_00073403-protein|organism=Clytia hemisphaerica|type=polypeptide|length=436bp
MYLQEFMRGTYSKAILSTPGRIVLMLVWAGLLAGGAYGLSQLKQDFDPEW
FLPEDSNARIYSSVDDKYFSNDGIQAYAYIEDVDYFADQDKLVSMYNTLE
NNQYTVKGETQSWYQTYIAWMAANHAADLTNGKPSTKDIFYNRLDEFTKT
QVGKVFEKEIKGNITEQKIEASRIKYKHIKLEGASVEVKAMDSVQDELAK
ITFTNDFSPFGYTRFYVGWETNKVISEELIRNLLLAGVIVFLVTLFLIAN
VWVSLLVLTCVVFTLINIAGYMHFWGLTVDTVTTIQLILAIGLSVDYSAH
IGHGFMAAREGNRVQRAAHALEEIGPAVVHGGFSTFLAFVCLGASQSYVF
STFFKLFFLVVVFGMFHGVVYLPIVLSLVGPEPYASSEPSTPSASTTSAG
KPPLPNNGVEMTDDKEPETKTAGVDNASFVEATLAS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045553	XLOC_045553	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00073403	TCONS_00073403	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003392	Ptc/Disp
IPR000731	SSD

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003392	Protein patched/dispatched	PFAM	PF02460	Patched	coord: 5..379 e-value: 7.8E-59 score: 199.5
None	No IPR available	GENE3D	1.20.1640.10		coord: 156..382 e-value: 4.9E-35 score: 120.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 386..436
None	No IPR available	SUPERFAMILY	82866	Multidrug efflux transporter AcrB transmembrane domain	coord: 189..380
IPR000731	Sterol-sensing domain	PROSITE	PS50156	SSD	coord: 249..378 score: 9.777

Blast

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BLAST of TCONS_00073403-protein vs. Swiss-Prot (Human)
Match: NPC1 (Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.438e-27
Identity = 104/438 (23.74%), Postives = 196/438 (44.75%), Query Frame = 0

Query:    3 LQEFMRGTYSKAILSTPGRIVLMLVWAGLLAGGAYGLSQLKQDFDPEWFLPEDSNARIYSSVDDKYFSNDGIQAYAYIEDVDYF-------------ADQDKLVS-MYNTLENNQYTVKG-ETQSWYQTYIAWMAANHAA----DLTN--GKPSTKDIFYNRLDEFT-----KTQVGKVFE------------KEIKG---------NIT---EQKIEASRIKYKHIKLEGASVEVKAMDSVQDELAKITFT-----NDFSPFGYTRFYVGWETNKVISEELIRNLLLAGVIVFLVTLFLI-ANVWVSLLVLTCVVFTLINIAGYMHFWGLTVDTVTTIQLILAIGLSVDYSAHIGHGFMAAREGNRVQRAAHALEEIGPAVVHG-GFSTFLAFVCLGASQSYVFSTF-FKLFFLVVVFGMFHGVVYLPIVLSLVGPE 382
            L  F + +YS  +L    R +++ ++ G+L+     L+++    D    +P+DS    Y     +Y        +   E  DY               + D LV  ++N  + + YT  G    SW   Y  W+    +     ++T+     S  D    R    T     + Q G                K  KG         NI      ++ A+     H  L+ ++  + A+   +   + +T T     + +  F Y+ FYV +E    I ++ I NL ++   +FLVT+ L+   +W ++++   +   L+N+ G M  WG++++ V+ + L+++ G+SV++ +HI   F  + +G+RV+RA  AL  +G +V  G   + F   V L  ++S +F  F F+++  +V+ G  HG+++LP++LS +GP 
Sbjct:  817 LFRFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSISQYLHAGPPVYFVLEEGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYTRIGFAPSSWIDDYFDWVKPQSSCCRVDNITDQFCNASVVDPACVRCRPLTPEGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHGTRVGATYFMTYHTVLQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLSYIGPS 1254

The following BLAST results are available for this feature:

BLAST of TCONS_00073403-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00073403-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
NPC1	2.438e-27	23.74	Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE...	[more]

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TCONS_00073403-protein (polypeptide) - C. hemisphaerica

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