TCONS_00073323-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073323-protein
Unique NameTCONS_00073323-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length127

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073323-protein ID=TCONS_00073323-protein|Name=TCONS_00073323-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
QSGKSTYLRQIALLQIMAQCGSFVPAAYASFRLCKQVFVRIGSDDDIETN
CSTFKLEMKEMHYILQNITDSSLLIIDELGRGTGIAEGVGISYSICEKLI
STKAFTFFATHFLELCDLSNVYHNVEK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045489XLOC_045489Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073323TCONS_00073323Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000432DNA_mismatch_repair_MutS_C
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0006298mismatch repair
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0030983mismatched DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006298 mismatch repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0030983 mismatched DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000432DNA mismatch repair protein MutS, C-terminalSMARTSM00534mutATP5coord: 2..127
e-value: 1.0E-27
score: 108.1
IPR000432DNA mismatch repair protein MutS, C-terminalPFAMPF00488MutS_Vcoord: 2..126
e-value: 2.0E-50
score: 171.4
IPR000432DNA mismatch repair protein MutS, C-terminalPROSITEPS00486DNA_MISMATCH_REPAIR_2coord: 72..88
NoneNo IPR availableGENE3D3.40.50.300coord: 1..125
e-value: 2.1E-19
score: 69.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..119

Blast
BLAST of TCONS_00073323-protein vs. Swiss-Prot (Human)
Match: MSH4 (MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 5.867e-55
Identity = 85/125 (68.00%), Postives = 100/125 (80.00%), Query Frame = 0
Query:    2 SGKSTYLRQIALLQIMAQCGSFVPAAYASFRLCKQVFVRIGSDDDIETNCSTFKLEMKEMHYILQNITDSSLLIIDELGRGTGIAEGVGISYSICEKLISTKAFTFFATHFLELCDLSNVYHNVE 126
            SGKSTYL+QIAL QIMAQ GS+VPA Y+SFR+ KQ+F RI +DDDIETN STF  EMKE+ YIL N  D SL++IDELGRGT   EG+GI Y++CE L+S KAFT FATHFLELC +  +Y NVE
Sbjct:  684 SGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAKQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGICYAVCEYLLSLKAFTLFATHFLELCHIDALYPNVE 808          
The following BLAST results are available for this feature:
BLAST of TCONS_00073323-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSH45.867e-5568.00MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=... [more]
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