TCONS_00073303-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00073303-protein
Unique Name	TCONS_00073303-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	632

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00073303-protein ID=TCONS_00073303-protein|Name=TCONS_00073303-protein|organism=Clytia hemisphaerica|type=polypeptide|length=632bp
MATKRNMILRIQTPEGMRRIQVGGADTVNTLYEKVQSFLKLQTNGWSIYK
DRGLNDELSKSSRKTLKGLQLNHGDVIYMKETGHFVSNSPTSMDDRPSSS
QSTDSTTVQTEKEDNTSKLDVVEDEIDVLLSHQSGLIKRDRHPLLCRHGK
QGQCLNCAPLEPYNEDYLKSLKPPAKHLSFHAYLKKMKSGVAKGKYISLE
DVNCKIKPGCTEHPPWPKGICTKCQPGAVMLNRQTYRHVDNIMFENPVIM
DRFLNYWRKTGGQRIGILYGKYEKHENVPLGIRATVAAIYEPPQDSNKDR
IQLLPNPQQESVDILASYFGLKQVGWIVTDLIPDTEKAGLVKHLRHAKTH
FLSAQECMMAADYQNKHPNPSKESKTGRFGSKFVTVVVSGDEEQHIHYEG
WQVSNQCMALVRDQCLVPTVDDSALGYIKESSSEQFVPDVFYKVKDEYGN
EVTKIGRPMPIEYFLIEVPAGFPMEPQSTFISSDPTNLFPIENRTQMMEN
QNFETLTQHLNRLKSSDVNLLEHFLDFHFLLFIMTNEFISIRHKMSDLCK
ALKQRDQMLFHQWLESDEWKTVETMVQTHAPMATDSPMDGSDAVPMETDN
SVTITGWTCPHCTFINKNPTSDTCDMCTLPKS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045473	XLOC_045473	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00073303	TCONS_00073303	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR024682	Npl4_Ub-like_dom
IPR007717	NPL4_C
IPR007716	NPL4_Zn-bd_put
IPR016563	Npl4
IPR001876	Znf_RanBP2
IPR029071	Ubiquitin-rel_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006511	ubiquitin-dependent protein catabolic process

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024682	Nuclear pore localisation protein Npl4, ubiquitin-like domain	PFAM	PF11543	UN_NPL4	coord: 6..81 e-value: 1.6E-20 score: 73.3
None	No IPR available	GENE3D	4.10.1060.10		coord: 590..632 e-value: 1.2E-4 score: 20.7
None	No IPR available	GENE3D	3.10.20.90		coord: 1..96 e-value: 0.0019 score: 17.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..116
IPR007717	Nuclear pore localisation protein NPL4, C-terminal	PFAM	PF05021	NPL4	coord: 264..577 e-value: 9.7E-113 score: 376.5
IPR007717	Nuclear pore localisation protein NPL4, C-terminal	CDD	cd08061	MPN_NPL4	coord: 230..533 e-value: 2.55535E-117 score: 352.817
IPR007716	NPL4, zinc-binding putative	PFAM	PF05020	zf-NPL4	coord: 121..261 e-value: 2.8E-55 score: 186.4
IPR016563	Nuclear protein localization protein 4	PIRSF	PIRSF010052	Polyub_prc_Npl4	coord: 7..580 e-value: 1.2E-185 score: 616.5
IPR001876	Zinc finger, RanBP2-type	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 605..631
IPR029071	Ubiquitin-related domain	SUPERFAMILY	54236	Ubiquitin-like	coord: 7..80

Blast

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BLAST of TCONS_00073303-protein vs. Swiss-Prot (Human)
Match: NPL4 (Nuclear protein localization protein 4 homolog OS=Homo sapiens GN=NPLOC4 PE=1 SV=3)

HSP 1 Score: 613.994 bits (1582), Expect = 0.000e+0
Identity = 291/628 (46.34%), Postives = 419/628 (66.72%), Query Frame = 0

Query:    6 NMILRIQTPEGMRRIQVGGADTVNTLYEKVQSFLKLQTNGWSIYKDRGLNDELSKSSRKTLKGLQLNHGDVIYMKETGHFVSNSPTSMDDRPSSSQSTDSTTVQTEKEDNTSKLDVVEDEIDVLLSHQSGLIKRDRHPLLCRHGKQGQCLNCAPLEPYNEDYLKSLKPPAKHLSFHAYLKKMKSGVAKGKYISLEDVNCKIKPGCTEHPPWPKGICTKCQPGAVMLNRQTYRHVDNIMFENPVIMDRFLNYWRKTGGQRIGILYGKYEKHENVPLGIRATVAAIYEPPQDSNKDRIQLLPNPQQESVDILASYFGLKQVGWIVTDLIPDTEKAGLVKHLRHAKTHFLSAQECMMAADYQNKHPNPSKESKTGRFGSKFVTVVVSGDEEQHIHYEGWQVSNQCMALVRDQCLVPTVDDSALGYIKESSSEQFVPDVFYKVKDEYGNEVTKIGRPMPIEYFLIEVPAGFPMEPQSTF-ISSDPTNLFPIENRTQMMENQNFETLTQHLNRLKSSDVNLLEHFLDFHFLLFIMTNEFISIRHKMSDLCKALKQRDQMLFHQWLESDEWKTVETMVQTHAPMATDSPMDGSDAVPMETDNSVTITGWTCPHCTFINKNPTSDTCDMCTLPKS 632
            ++I+R+Q+P+G++RI     +T  T  +KV      Q NG+S+Y +R    E++ SS K+L  L++ HGD++++          P+S+    S  +++     +     N     VVEDEID  LS Q G I R R P LCRHG  G+C++C PLEP++EDYL  L+PP KH+SFHAY++K+  G  KGK+++LE+++CKIK GC  H PWP GICTKCQP A+ LNRQ YRHVDNIMFEN  + DRFL++WRKTG Q  G LYG+Y +H+++PLGIRA VAAIYEPPQ   ++ ++LL +P+ E VD +A+  GL++VGWI TDL+ +  + G V++ R+  T+FLS++EC+ A D+QNKHPN  + S  G FGSKFVT V +G  +  +H+EG+QVSNQCMALVRD+CL+P  D   LGY KESSSEQ+VPDVFYK  D++GNE+T++ RP+P+EY +I++   FP +P  TF IS +P   FPIENR  + E Q+F +L  +L++  SS    L+   DFH LLF++TNE + ++  +S L +A++ R++ L   W  S++W T+E +  T   +    P          + ++ T   W C HCTF+N+ P +  C+MC+LP++
Sbjct:    4 SIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSNKSLNLLKIKHGDLLFL---------FPSSLAGPSSEMETSVPPGFKVFGAPN-----VVEDEIDQYLSKQDGKIYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKFVALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDFWRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIAAKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPDGHFGSKFVTAVATGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKESSSEQYVPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNP---FPIENRDVLGETQDFHSLATYLSQNTSS--VFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELAQTWKRSEQWATIEQLCST---VGGQLPGLHEYGAVGGSTHTATAAMWACQHCTFMNQ-PGTGHCEMCSLPRT 608

The following BLAST results are available for this feature:

BLAST of TCONS_00073303-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00073303-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
NPL4	0.000e+0	46.34	Nuclear protein localization protein 4 homolog OS=...	[more]

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TCONS_00073303-protein (polypeptide) - C. hemisphaerica

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