TCONS_00073262-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00073262-protein
Unique Name	TCONS_00073262-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	810

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00073262-protein ID=TCONS_00073262-protein|Name=TCONS_00073262-protein|organism=Clytia hemisphaerica|type=polypeptide|length=810bp
MEWVLLKVCLLLATRMCQETLAAVISPNHDGKKIDLENNVRQNSTKDLRS
SLPRQLRINKNQAIIVKEPRDFNIIYVENRTAIVERFENETKTIVDSNEV
KTRLSLKDKLQSLVKRKGITISLLNQDQESMLNLRTKDCILPTTFDVLIE
IVTRFEPKELILIYHSKILSQVDIIDWKEKTSKHKEFKFIDFKIKEDDLY
DHTGKILKEISRSTDVKLIILFTPLEITNLIFRLRSEKFRMITGGTWIVD
KGIYPEADRPPKMAEFEYFKYRVVLNSASMRYGGSICDLATKMARKVIEE
KLLADEIRMIRLWQLQTWRTVYKVSYLNQQYQLSSQSIFGKNQKISVVSR
LDEPFLMENYIPCEHFQCQKHIMSCRLPFHNKTTHIREWRSSKCSGYVVD
LLYELSVEMHTEFELYVAFDGEFGRCVNRSTNEWTGMIGDVLRREADLAI
QGITITEERLKVVDFTLPYLQSRIEILTLKEMPKEQLFSMYFLELYDLEA
RYVLVPLFLLSILSVYVSENIIIFKSNITKRKQKRRNKMELRDLGLYFAG
SVFQKGDLGAANPKTYSGRFVSLSWSFCFLVLTSLYTALLTADRVVTGGY
SSFHGMKDQRILNPTSAFKFGTINNTVLSDYFKTAPLASALRIHHFMKRY
HQNDYNVTLPLLERSYLHAFFAEHVFVLPHVKKYECKFKAHKTPIPEASY
GAVVAKGSPLKGLVSQAILKLNDAKILDELKERWFTNACENTESTNINPF
NLIFFSSLFMVLLFAVVLSFIVLGXKYRIDKHKPIQLNILFITFYGFIVC
CCTIFHRIRN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045451	XLOC_045451	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00073262	TCONS_00073262	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001320	Iontro_rcpt
IPR019594	Glu/Gly-bd

Vocabulary: **Molecular Function**
Term	Definition
GO:0004970	ionotropic glutamate receptor activity
GO:0005234	extracellular-glutamate-gated ion channel activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0005234	extracellular-glutamate-gated ion channel activity
molecular_function	GO:0004970	ionotropic glutamate receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001320	Ionotropic glutamate receptor	SMART	SM00079	GluR_14	coord: 372..737 e-value: 2.5E-8 score: 28.3
IPR001320	Ionotropic glutamate receptor	PFAM	PF00060	Lig_chan	coord: 509..765 e-value: 5.7E-12 score: 45.6
IPR019594	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	SMART	SM00918	Lig_chan_Glu_bd_2	coord: 378..443 e-value: 2.1E-9 score: 47.3
IPR019594	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	PFAM	PF10613	Lig_chan-Glu_bd	coord: 376..480 e-value: 1.2E-25 score: 89.8
None	No IPR available	GENE3D	1.10.287.70		coord: 491..628 e-value: 4.7E-6 score: 25.6
None	No IPR available	GENE3D	3.40.190.10		coord: 629..743 e-value: 1.5E-7 score: 30.8
None	No IPR available	GENE3D	3.40.190.10		coord: 340..490 e-value: 1.5E-19 score: 69.5
None	No IPR available	SUPERFAMILY	53850	Periplasmic binding protein-like II	coord: 601..736 coord: 390..481

Blast

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BLAST of TCONS_00073262-protein vs. Swiss-Prot (Human)
Match: NMDZ1 (Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens GN=GRIN1 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.241e-32
Identity = 104/431 (24.13%), Postives = 195/431 (45.24%), Query Frame = 0

Query:  375 CRLPFHNKTTHIREWRSSKCSGYVVDLLYELSVEMHTEFELYVAFDGEFG---RCVNRSTNEWTGMIGDVLRREADLAIQGITITEERLKVVDFTLPYLQSRIEILTLKEMPKE------QLFSMYFLELYDLEARYVLVPLFLLSILSVYVSENIIIFKSNITKRKQKRRNKMELRDLGLYFAGSVFQKGDLGAANPKTYSGRFVSLSWSFCFLVLTSLYTALLTADRVVTGGYSSFHGMKDQRILNPTSAFKFGTINNTVLSDYFKTAPLASALRIHHFMKRYHQNDYNVTLPLLERSYLHAFFAEHVFVLPHVKKYECKFKAHKTPIPEASYGAVVAKGSPLKGLVSQAILKLNDAKILDELKERWFTNACENTESTNINPFNLIF--FSSLFMVLLFAVVLSFIVLGXKYRIDKHKPIQLNILFITF 794
            C  P        R      C G+ +DLL +L+  M+  +E+++  DG+FG   R  N +  EW GM+G++L  +AD+ +  +TI  ER + ++F+ P+    + IL  KE+P+       Q F      L  L    V V L+LL   S +       FK N    +++  + + L    ++F+  V     +G   P+++S R + + W+   +++ + YTA L A  V+        G+ D R+ NP+  F + T+  + +  YF+     S +  H  M++++       +  +  + LHAF  +   VL      +C           + +G  + K SP K  VS +ILK ++   +++L + W     +  +S +  P  L F   + +FM++   +V    ++  +    +HK  +   + + F
Sbjct:  436 CTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFSPFGR-----FKVN---SEEEEEDALTLSS-AMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRH--MEKHNYESAAEAIQAVRDNKLHAFIWDSA-VLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVR--YQECDSRSNAPATLTFENMAGVFMLVAGGIVAGIFLIFIEIAYKRHKDARRKQMQLAF 852

The following BLAST results are available for this feature:

BLAST of TCONS_00073262-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00073262-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
NMDZ1	1.241e-32	24.13	Glutamate receptor ionotropic, NMDA 1 OS=Homo sapi...	[more]

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TCONS_00073262-protein (polypeptide) - C. hemisphaerica

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