TCONS_00073262-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073262-protein
Unique NameTCONS_00073262-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length810

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073262-protein ID=TCONS_00073262-protein|Name=TCONS_00073262-protein|organism=Clytia hemisphaerica|type=polypeptide|length=810bp
MEWVLLKVCLLLATRMCQETLAAVISPNHDGKKIDLENNVRQNSTKDLRS
SLPRQLRINKNQAIIVKEPRDFNIIYVENRTAIVERFENETKTIVDSNEV
KTRLSLKDKLQSLVKRKGITISLLNQDQESMLNLRTKDCILPTTFDVLIE
IVTRFEPKELILIYHSKILSQVDIIDWKEKTSKHKEFKFIDFKIKEDDLY
DHTGKILKEISRSTDVKLIILFTPLEITNLIFRLRSEKFRMITGGTWIVD
KGIYPEADRPPKMAEFEYFKYRVVLNSASMRYGGSICDLATKMARKVIEE
KLLADEIRMIRLWQLQTWRTVYKVSYLNQQYQLSSQSIFGKNQKISVVSR
LDEPFLMENYIPCEHFQCQKHIMSCRLPFHNKTTHIREWRSSKCSGYVVD
LLYELSVEMHTEFELYVAFDGEFGRCVNRSTNEWTGMIGDVLRREADLAI
QGITITEERLKVVDFTLPYLQSRIEILTLKEMPKEQLFSMYFLELYDLEA
RYVLVPLFLLSILSVYVSENIIIFKSNITKRKQKRRNKMELRDLGLYFAG
SVFQKGDLGAANPKTYSGRFVSLSWSFCFLVLTSLYTALLTADRVVTGGY
SSFHGMKDQRILNPTSAFKFGTINNTVLSDYFKTAPLASALRIHHFMKRY
HQNDYNVTLPLLERSYLHAFFAEHVFVLPHVKKYECKFKAHKTPIPEASY
GAVVAKGSPLKGLVSQAILKLNDAKILDELKERWFTNACENTESTNINPF
NLIFFSSLFMVLLFAVVLSFIVLGXKYRIDKHKPIQLNILFITFYGFIVC
CCTIFHRIRN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045451XLOC_045451Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073262TCONS_00073262Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001320Iontro_rcpt
IPR019594Glu/Gly-bd
Vocabulary: Molecular Function
TermDefinition
GO:0004970ionotropic glutamate receptor activity
GO:0005234extracellular-glutamate-gated ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001320Ionotropic glutamate receptorSMARTSM00079GluR_14coord: 372..737
e-value: 2.5E-8
score: 28.3
IPR001320Ionotropic glutamate receptorPFAMPF00060Lig_chancoord: 509..765
e-value: 5.7E-12
score: 45.6
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainSMARTSM00918Lig_chan_Glu_bd_2coord: 378..443
e-value: 2.1E-9
score: 47.3
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainPFAMPF10613Lig_chan-Glu_bdcoord: 376..480
e-value: 1.2E-25
score: 89.8
NoneNo IPR availableGENE3D1.10.287.70coord: 491..628
e-value: 4.7E-6
score: 25.6
NoneNo IPR availableGENE3D3.40.190.10coord: 629..743
e-value: 1.5E-7
score: 30.8
NoneNo IPR availableGENE3D3.40.190.10coord: 340..490
e-value: 1.5E-19
score: 69.5
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 601..736
coord: 390..481

Blast
[Close]
BLAST of TCONS_00073262-protein vs. Swiss-Prot (Human)
Match: NMDZ1 (Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens GN=GRIN1 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.241e-32
Identity = 104/431 (24.13%), Postives = 195/431 (45.24%), Query Frame = 0 
Query:  375 CRLPFHNKTTHIREWRSSKCSGYVVDLLYELSVEMHTEFELYVAFDGEFG---RCVNRSTNEWTGMIGDVLRREADLAIQGITITEERLKVVDFTLPYLQSRIEILTLKEMPKE------QLFSMYFLELYDLEARYVLVPLFLLSILSVYVSENIIIFKSNITKRKQKRRNKMELRDLGLYFAGSVFQKGDLGAANPKTYSGRFVSLSWSFCFLVLTSLYTALLTADRVVTGGYSSFHGMKDQRILNPTSAFKFGTINNTVLSDYFKTAPLASALRIHHFMKRYHQNDYNVTLPLLERSYLHAFFAEHVFVLPHVKKYECKFKAHKTPIPEASYGAVVAKGSPLKGLVSQAILKLNDAKILDELKERWFTNACENTESTNINPFNLIF--FSSLFMVLLFAVVLSFIVLGXKYRIDKHKPIQLNILFITF 794
            C  P        R      C G+ +DLL +L+  M+  +E+++  DG+FG   R  N +  EW GM+G++L  +AD+ +  +TI  ER + ++F+ P+    + IL  KE+P+       Q F      L  L    V V L+LL   S +       FK N    +++  + + L    ++F+  V     +G   P+++S R + + W+   +++ + YTA L A  V+        G+ D R+ NP+  F + T+  + +  YF+     S +  H  M++++       +  +  + LHAF  +   VL      +C           + +G  + K SP K  VS +ILK ++   +++L + W     +  +S +  P  L F   + +FM++   +V    ++  +    +HK  +   + + F
Sbjct:  436 CTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFSPFGR-----FKVN---SEEEEEDALTLSS-AMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRH--MEKHNYESAAEAIQAVRDNKLHAFIWDSA-VLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVR--YQECDSRSNAPATLTFENMAGVFMLVAGGIVAGIFLIFIEIAYKRHKDARRKQMQLAF 852
The following BLAST results are available for this feature:
BLAST of TCONS_00073262-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMDZ11.241e-3224.13Glutamate receptor ionotropic, NMDA 1 OS=Homo sapi... [more]
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