TCONS_00073047-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073047-protein
Unique NameTCONS_00073047-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length802

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073047-protein ID=TCONS_00073047-protein|Name=TCONS_00073047-protein|organism=Clytia hemisphaerica|type=polypeptide|length=802bp
MSTAHMSPQEEQDKLLEEALQVVKSQSFQMKRCLDKVKIMDALKHGSNML
GELRTSLLSPKSYYELYMKVSDELRHLELFLLDEFSKGRKVNDLYELVQY
AGNIIPRLYLLITVGIVYIKFGDVAKKDVIKDLVEMCRGVQHPLRGLFLR
NYLLQSTRGLLPDDTENTSEGTVKDSIDFILLNFAEMNKLWVRMQHQGHS
KYKEKRERERQELRILVGTNLVRLSQLEGVDVDIYKRDVLPGVLEQCICC
RDPIAQEYLMECIIQVFPDEFHLQTLNAFLKACAELHQDVNVKNIIIALI
DRLAMFAHRDDGPGIPNDIRLFEIFSQQVANVVKSRSDMPTEDIVALQVS
LINLALKCYPDRVDYVDKVLEYTEEIFSKLNLAHIDKNNAVSKELMRLLK
IPVDNYNNVLTILKLKHFAPLFDYFDFATRKEMAMYVINNALDSDTFIPS
QEEVDSILQLAAPLVMEQDDQPTEPDDPEDFAEEQGLMGRFVTLLYSDNP
DQQYLILNTARKHFGNGGEQRIKWTLPPLVFAAFRLAFIYRDQQEHDDKW
DKKCQKIFQFCHQTICALSKAEYAELSLRLFLQGALAADQQRFTNAETVA
YEFMSQAFAIYEDEISDSKAQLAAITLIIGTFERATCFTEENHEPLRTQC
ALAASKLLKKPDQCRGVSSCSHLFWSGRVYGSGEDEEGEKESVECRDGKR
VMECLKKSLRIANQCMDPTVQVQLFVEILNRYLYYFEKGNEAVNSAILNQ
LIGKIREDLPGLEVSDEMEQITKHFNNTVLHIQSKKENGTEQETEMYKDV
SL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045292XLOC_045292Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073047TCONS_00073047Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005378Vps35
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
GO:0042147retrograde transport, endosome to Golgi
Vocabulary: Molecular Function
TermDefinition
GO:0008565protein transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0030904retromer complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
biological_process GO:0042147 retrograde transport, endosome to Golgi
cellular_component GO:0030904 retromer complex
molecular_function GO:0008565 protein transporter activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005378Vacuolar protein sorting-associated protein 35PFAMPF03635Vps35coord: 15..757
e-value: 2.6E-300
score: 998.1
IPR005378Vacuolar protein sorting-associated protein 35PIRSFPIRSF009375Retromer_Vps35coord: 311..802
e-value: 4.0E-139
score: 463.3
coord: 5..320
e-value: 1.5E-163
score: 544.1

Blast
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BLAST of TCONS_00073047-protein vs. Swiss-Prot (Human)
Match: VPS35 (Vacuolar protein sorting-associated protein 35 OS=Homo sapiens GN=VPS35 PE=1 SV=2)

HSP 1 Score: 1192.56 bits (3084), Expect = 0.000e+0
Identity = 588/805 (73.04%), Postives = 689/805 (85.59%), Query Frame = 0 
Query:    1 MSTAHMSPQEEQDKLLEEALQVVKSQSFQMKRCLDKVKIMDALKHGSNMLGELRTSLLSPKSYYELYMKVSDELRHLELFLLDEFSKGRKVNDLYELVQYAGNIIPRLYLLITVGIVYIKFGDVAKKDVIKDLVEMCRGVQHPLRGLFLRNYLLQSTRGLLPDDTENTSE---GTVKDSIDFILLNFAEMNKLWVRMQHQGHSKYKEKRERERQELRILVGTNLVRLSQLEGVDVDIYKRDVLPGVLEQCICCRDPIAQEYLMECIIQVFPDEFHLQTLNAFLKACAELHQDVNVKNIIIALIDRLAMFAHRDDGPGIPNDIRLFEIFSQQVANVVKSRSDMPTEDIVALQVSLINLALKCYPDRVDYVDKVLEYTEEIFSKLNLAHIDKNNAVSKELMRLLKIPVDNYNNVLTILKLKHFAPLFDYFDFATRKEMAMYVINNALDSDTFIPSQEEVDSILQLAAPLVMEQDDQPTEPDDPEDFAEEQGLMGRFVTLLYSDNPDQQYLILNTARKHFGNGGEQRIKWTLPPLVFAAFRLAFIYRDQQEHDDKWDKKCQKIFQFCHQTICALSKAEYAELSLRLFLQGALAADQQRFTNAETVAYEFMSQAFAIYEDEISDSKAQLAAITLIIGTFERATCFTEENHEPLRTQCALAASKLLKKPDQCRGVSSCSHLFWSGRVYGSGEDEEGEKESVECRDGKRVMECLKKSLRIANQCMDPTVQVQLFVEILNRYLYYFEKGNEAVNSAILNQLIGKIREDLPGLEVSDEMEQITKHFNNTVLHIQSKKENGTEQETEMYKDVSL 802
            M T   SPQ+EQ+KLL+EA+Q VK QSFQMKRCLDK K+MDALKH SNMLGELRTS+LSPKSYYELYM +SDEL +LE++L DEF+KGRKV DLYELVQYAGNIIPRLYLLITVG+VY+K    ++KD++KDLVEMCRGVQHPLRGLFLRNYLLQ TR +LPD+ E T E   G + DS+DF+LLNFAEMNKLWVRMQHQGHS+ +EKRERERQELRILVGTNLVRLSQLEGV+V+ YK+ VL G+LEQ + CRD +AQEYLMECIIQVFPDEFHLQTLN FL+ACAELHQ+VNVKNIIIALIDRLA+FAHR+DGPGIP DI+LF+IFSQQVA V++SR DMP+ED+V+LQVSLINLA+KCYPDRVDYVDKVLE T EIF+KLNL HI  ++AVSKEL RLLKIPVD YNN+LT+LKLKHF PLF+YFD+ +RK M+ YV++N LD +T I SQ++VDSI+ L + L+ +Q DQP E  DPEDFA+EQ L+GRF+ LL S++PDQQYLILNTARKHFG GG QRI++TLPPLVFAA++LAF Y++  + DDKW+KKCQKIF F HQTI AL KAE AEL LRLFLQGALAA +  F N ETVAYEFMSQAF++YEDEISDSKAQLAAITLIIGTFER  CF+EENHEPLRTQCALAASKLLKKPDQ R VS+C+HLFWSGR      D+ GE    E   GKRVMECLKK+L+IANQCMDP++QVQLF+EILNRY+Y++EK N+AV   +LNQLI KIREDLP LE S+E EQI KHF+NT+ H++ ++E+  E E  +Y+ + L
Sbjct:    1 MPTTQQSPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVKSFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGEPTDEETTGDISDSMDFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQIVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIIIALIDRLALFAHREDGPGIPADIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCYPDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLKLKHFHPLFEYFDYESRKSMSCYVLSNVLDYNTEIVSQDQVDSIMNLVSTLIQDQPDQPVEDPDPEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGR----NTDKNGE----ELHGGKRVMECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLRRES-PESEGPIYEGLIL 796
The following BLAST results are available for this feature:
BLAST of TCONS_00073047-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VPS350.000e+073.04Vacuolar protein sorting-associated protein 35 OS=... [more]
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