TCONS_00072784-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072784-protein
Unique NameTCONS_00072784-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length788

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072784-protein ID=TCONS_00072784-protein|Name=TCONS_00072784-protein|organism=Clytia hemisphaerica|type=polypeptide|length=788bp
MSEIKDYMLDLYVKEDRVERVKHYTEHVEKLFDVELKFTSGEGKQYMPVA
GQWLDVEGQRRNVIKAREYVKGLSSPEEVIRFTFPEEIYEIICGKEGDKY
YELEQETAANIVFYSPVEVEISGSINAVTKASTVIEDIIKDFVNNHSPPP
LPLNEEYTEDNPDYNTCVVERDSGIYLKCPLGYDSQSDLSLNRSSIVTVD
EGLEADSELHSQHYNLDDNRSDSISPRNSTDNEELMEYAKKLGYSESQVK
SAIKKLGPDIVDQNDLLHELIKASNSIRDNKFLEDNSGSLKKLYDTASNL
STNSDNGFLRHIVIDGSNVAMSHGNNQVFSCRGIAIIVNYFQKRGHGVTV
FVPAWRKETSKSSTPIIDQDILTRLDSDGVLSFTPSRRVDGKLIQSYDDR
YIVRLAMETDGIIVSNDHFRDLQKEEPNWKDFINKRLLMYTFAGDIFMPP
DDPLGRQGPNLSDFLRKNTIERRMTQYCPYGKKCTFGPKCKFYHPERRFS
GSFVKKPLPPLPNQHHHPSGGGGSGSRPRSDPGHISLSGDNKQRPISLPN
LEQLYVSHPHSLHRHIYMNSQQSRPVSGPPFPENAANNQQPYPLYAAARE
QNLAARAAVELMNQQKQYSGDYSHFNHTQPYVMYAQRRPPSGEFVAMPPN
HEGIGRPLSSDFGSRPSSGEYSYAGSCNGSRPASGDYGNNSRPSSGDFGS
MQWGYQRQFPSHGGNFYPKKVFYKSRGGPTLPETKEEPRPTPKIDIVNKL
RELYPEKYDQILWILRTYPEIKSVDEALPYLKECIKAQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045179XLOC_045179Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072784TCONS_00072784Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004088KH_dom_type_1
IPR021869RNase_Zc3h12_NYN
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 56..161
e-value: 7.3E-7
score: 28.4
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 80..136
e-value: 4.4E-5
score: 23.1
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 80..143
IPR021869Ribonuclease Zc3h12a-like, NYN domainPFAMPF11977RNase_Zc3h12acoord: 309..462
e-value: 1.2E-56
score: 190.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 649..703
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 503..544
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 77..135
score: 10.085
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 472..497
score: 9.563

Blast
[Close]
BLAST of TCONS_00072784-protein vs. Swiss-Prot (Human)
Match: ZC12B (Probable ribonuclease ZC3H12B OS=Homo sapiens GN=ZC3H12B PE=2 SV=3)

HSP 1 Score: 297.36 bits (760), Expect = 1.623e-88
Identity = 147/270 (54.44%), Postives = 188/270 (69.63%), Query Frame = 0 
Query:  236 MEYAKKLGYSESQVKSAIKKLGPDIVDQNDLLHELIKASNSIRDN-----KFLEDNSGSLKKLYDTASNLSTNSDNG-FLRHIVIDGSNVAMSHGNNQVFSCRGIAIIVNYFQKRGHG-VTVFVPAWRKETSKSSTPIIDQDILTRLDSDGVLSFTPSRRVDGKLIQSYDDRYIVRLAMETDGIIVSNDHFRDLQKEEPNWKDFINKRLLMYTFAGDIFMPPDDPLGRQGPNLSDFLRKNTI-ERRMTQYCPYGKKCTFGPKCKFYHPER 497
            ME+A KLGY+E Q++S + KLGP+ +  ND+L EL++  N            L     S +++     +L    DN   LR +VIDGSNVAMSHGN + FSCRGI + V++F  +GH  +TVFVPAWRKE S+   PI DQDIL +L+ + +L FTPSRRV G+ +  YDDR+IV+LA ++DGIIVSND++RDLQ E+P WK FI +RLLMY+F  D FMPPDDPLGR GP+L +FLRK  I      Q CPYGKKCT+G KCK+YHPER
Sbjct:  112 MEFALKLGYAEEQIQSVLNKLGPESL-INDVLAELVRLGNKGDSEGQINLSLLVPRGPSSREIASPELSLEDEIDNSDNLRPVVIDGSNVAMSHGNKEEFSCRGIQLAVDWFLDKGHKDITVFVPAWRKEQSRPDAPITDQDILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAFDSDGIIVSNDNYRDLQVEKPEWKKFIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKRPIVPEHKKQPCPYGKKCTYGHKCKYYHPER 380
The following BLAST results are available for this feature:
BLAST of TCONS_00072784-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZC12B1.623e-8854.44Probable ribonuclease ZC3H12B OS=Homo sapiens GN=Z... [more]
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