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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00072626-protein ID=TCONS_00072626-protein|Name=TCONS_00072626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=588bp
IIAVSSQEERPADVTKGYTKPIQFYETTSVRLFWEASTSTKEKTSISYTV
TYCRLNFPDTCTTLESTNGLTLVLKSLNKDTYYQYKIQVRDQQNQTGAKP
YENYFRTERKNSCQPGHFRCTDSAQCVFSNRTCNGIQDCGDGSDERIDAG
CSAPRYAPKDVQLVGAGSTVAEIKWISVPQSDRPYLYNILIQDGTDDDQT
KNIRTGFAAILISATLDGLLPNREYTIKIRAVNVVGSGIYSDPLKFKTAR
LDLPTLEMPKNASVTPILYQESTSIKLSWSSPTDLKGNNPSLITYQVNYC
SINKKCDKFTEKASRTTTLLTDLQRSHIYQFTIRVFNENMESDDEKSTYT
NIFKTVSKDTCRSNFFTCTQSPQCVQQDRKCDGLINCSDRSDESEAAGCE
LPHFFGKISIKDVSYNTAILQFEPSRDPKQRIRGYEIENMVTKETQLIRH
STLSHERIIKVTFVGLKPLTHYEFRVRAVNPTGTGLWSPPSKTRTTAKPT
PKPTTTDPRSGDTTTSTRRPKPTMEPAESSSGLSNNEKVGVAVAIILAVL
LVIITVVIVTRDKSKNGKKPEYTVKQGVSNPSYVEGEV Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | PRINTS | PR00261 | LDLRECEPTOR | coord: 124..145
score: 47.45
coord: 372..393
score: 40.35 |
| IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | SMART | SM00192 | LDLa_2 | coord: 360..401
e-value: 3.7E-8
score: 43.1
coord: 112..153
e-value: 9.9E-8
score: 41.7 |
| IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | PFAM | PF00057 | Ldl_recept_a | coord: 112..151
e-value: 3.4E-8
score: 33.5
coord: 360..397
e-value: 3.6E-6
score: 27.0 |
| IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | PROSITE | PS50068 | LDLRA_2 | coord: 112..152
score: 12.637 |
| IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | PROSITE | PS50068 | LDLRA_2 | coord: 360..400
score: 11.1 |
| IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | SUPERFAMILY | 57424 | LDL receptor-like module | coord: 111..145 |
| IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | SUPERFAMILY | 57424 | LDL receptor-like module | coord: 360..395 |
| IPR003961 | Fibronectin type III | SMART | SM00060 | FN3_2 | coord: 16..97
e-value: 11.0
score: 11.1
coord: 256..342
e-value: 0.0012
score: 28.1
coord: 402..485
e-value: 1.6E-6
score: 37.7
coord: 155..238
e-value: 5.8E-5
score: 32.5 |
| IPR003961 | Fibronectin type III | PFAM | PF00041 | fn3 | coord: 157..240
e-value: 3.4E-7
score: 30.4
coord: 408..488
e-value: 1.1E-10
score: 41.6
coord: 259..339
e-value: 1.6E-7
score: 31.5 |
| IPR003961 | Fibronectin type III | PROSITE | PS50853 | FN3 | coord: 258..363
score: 13.428 |
| IPR003961 | Fibronectin type III | PROSITE | PS50853 | FN3 | coord: 404..499
score: 18.091 |
| IPR003961 | Fibronectin type III | PROSITE | PS50853 | FN3 | coord: 10..110
score: 10.975 |
| IPR003961 | Fibronectin type III | PROSITE | PS50853 | FN3 | coord: 157..251
score: 15.259 |
| IPR003961 | Fibronectin type III | CDD | cd00063 | FN3 | coord: 406..494
e-value: 1.73912E-11
score: 60.2027 |
| IPR003961 | Fibronectin type III | CDD | cd00063 | FN3 | coord: 157..248
e-value: 2.12305E-9
score: 54.0395 |
| IPR003961 | Fibronectin type III | CDD | cd00063 | FN3 | coord: 259..343
e-value: 2.69931E-6
score: 44.7947 |
| IPR003961 | Fibronectin type III | SUPERFAMILY | 49265 | Fibronectin type III | coord: 24..92 |
| IPR003961 | Fibronectin type III | SUPERFAMILY | 49265 | Fibronectin type III | coord: 157..342 |
| IPR003961 | Fibronectin type III | SUPERFAMILY | 49265 | Fibronectin type III | coord: 407..503 |
| IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 21..97
e-value: 1.3E-6
score: 28.2 |
| IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 150..257
e-value: 1.2E-13
score: 50.6 |
| IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 403..508
e-value: 2.0E-15
score: 56.5 |
| IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 258..352
e-value: 1.1E-11
score: 44.5 |
| None | No IPR available | GENE3D | 4.10.400.10 | | coord: 355..402
e-value: 7.7E-8
score: 31.6
coord: 108..149
e-value: 1.5E-10
score: 40.3 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 483..534 |
| None | No IPR available | CDD | cd00112 | LDLa | coord: 361..393
e-value: 2.59324E-6
score: 43.7346 |
| None | No IPR available | CDD | cd00112 | LDLa | coord: 113..146
e-value: 1.79632E-9
score: 52.9794 |
| IPR023415 | Low-density lipoprotein (LDL) receptor class A, conserved site | PROSITE | PS01209 | LDLRA_1 | coord: 374..399 |
| IPR023415 | Low-density lipoprotein (LDL) receptor class A, conserved site | PROSITE | PS01209 | LDLRA_1 | coord: 126..151 |
Blast
The following BLAST results are available for this feature:
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