TCONS_00072579-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072579-protein
Unique NameTCONS_00072579-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length234

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072579-protein ID=TCONS_00072579-protein|Name=TCONS_00072579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MEGQVSQTIYINNLNEKIKQEEVKKSLEAMFSQFGTILDVVAMKTLKMKG
QAFVVFKDASSATQAMRSMQGFPFHDKPLRIAYAKSKSDVVAKMDNTFVP
RDKKKRKAEEAKKKLQAIAAKQAKMQNQFNPMMQPGVNPYQAMGQPQQQQ
MPAVEPPPNHILFLSNLPNETTQLMLSMLFQQVPGYREARLVNGRHDIAF
VEFENADQAKRAKEQLNGYKISPSHPMVITYAKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045039XLOC_045039Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072579TCONS_00072579Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 101..128
NoneNo IPR availableGENE3D3.30.70.330coord: 96..234
e-value: 3.3E-16
score: 59.0
NoneNo IPR availableGENE3D3.30.70.330coord: 2..92
e-value: 4.3E-22
score: 77.6
NoneNo IPR availableCDDcd12246RRM1_U1A_likecoord: 8..85
e-value: 1.955E-45
score: 147.29
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 8..82
e-value: 8.4E-17
score: 71.8
coord: 161..230
e-value: 1.9E-12
score: 57.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 9..80
e-value: 1.9E-12
score: 46.7
coord: 162..221
e-value: 6.7E-15
score: 54.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 7..86
score: 16.108
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 160..234
score: 12.884
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 157..228
coord: 7..96

Blast
[Close]
BLAST of TCONS_00072579-protein vs. Swiss-Prot (Human)
Match: SNRPA (U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1 SV=3)

HSP 1 Score: 246.128 bits (627), Expect = 6.101e-82
Identity = 140/280 (50.00%), Postives = 178/280 (63.57%), Query Frame = 0 
Query:    2 EGQVSQTIYINNLNEKIKQEEVKKSLEAMFSQFGTILDVVAMKTLKMKGQAFVVFKDASSATQAMRSMQGFPFHDKPLRIAYAKSKSDVVAKMDNTFVPRDKKKRK-------AEEAKKKLQA------IAAKQAKMQNQFNPMMQ---------------------------PGVNPYQAMGQPQQ---QQMPAVEP----PPNHILFLSNLPNETTQLMLSMLFQQVPGYREARLVNGRHDIAFVEFENADQAKRAKEQLNGYKISPSHPMVITYAKK 234
            E + + TIYINNLNEKIK++E+KKSL A+FSQFG ILD++  ++LKM+GQAFV+FK+ SSAT A+RSMQGFPF+DKP+RI YAK+ SD++AKM  TFV RD+K+ K           KK +Q       + A Q  +     PM Q                           PG  P  AM  PQQ    QMP  +P    PPNHILFL+NLP ET +LMLSMLF Q PG++E RLV GRHDIAFVEF+N  QA  A++ L G+KI+ ++ M I++AKK
Sbjct:    5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPG-MPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAM-PPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
The following BLAST results are available for this feature:
BLAST of TCONS_00072579-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNRPA6.101e-8250.00U1 small nuclear ribonucleoprotein A OS=Homo sapie... [more]
back to top