TCONS_00072110-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00072110-protein
Unique Name	TCONS_00072110-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	449

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00072110-protein ID=TCONS_00072110-protein|Name=TCONS_00072110-protein|organism=Clytia hemisphaerica|type=polypeptide|length=449bp
MATKKKRAADNYLTHDNWDQEDDSEEPEDPGVFKPADEEVLAQRTIRKAK
RRGLSSASSGEEKSNPFAKFGGFGGGNTSTPTLTFGAAKVITPAKPVAPL
AAMNTNKSTQNNFWGNKTEDQKKDFFSNRKPANEKPLNESATSDTNNNSD
KENGSNKKTDENFQKELCQLNMSVLRFIQKNLDDNPVIDLQPVFNDYKKH
IEVLNAKYELEASSTESDASTKTESKPEPTQASFKTPLTSKTPESALASA
PAVSSAAPPFSFKSSTPIPANPFGELKTNSVFNAAASPFSFKPSAASSAT
TTGGTSTKVPETVKEENADDEDKVPEPERKTVVESDAFHTTRCKLFFKKG
AEWKELGIGMLYLKPGSDDTKVQLLVRMETSTGKVLINVTVTNDTPTSRS
GKNNVMVVTIPNPPVFSKPEEGDNGKPCTYLIRVKGTTEADELFGKIKK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044786	XLOC_044786	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00072110	TCONS_00072110	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000156	Ran_bind_dom
IPR011993	PH_dom-like
IPR015007	NUP2/50/61

Vocabulary: **Biological Process**
Term	Definition
GO:0046907	intracellular transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0005643	nuclear pore

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046907	intracellular transport
cellular_component	GO:0005643	nuclear pore

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000156	Ran binding domain	SMART	SM00160	ranbd_3	coord: 329..447 e-value: 0.0032 score: -19.1
IPR000156	Ran binding domain	PFAM	PF00638	Ran_BP1	coord: 337..448 e-value: 2.5E-7 score: 30.9
IPR000156	Ran binding domain	PROSITE	PS50196	RANBD1	coord: 309..449 score: 10.819
IPR011993	PH domain-like	GENE3D	2.30.29.30		coord: 311..449 e-value: 2.5E-21 score: 75.5
IPR011993	PH domain-like	SUPERFAMILY	50729	PH domain-like	coord: 320..448
IPR015007	Nuclear pore complex, NUP2/50/61	PFAM	PF08911	NUP50	coord: 6..74 e-value: 5.0E-21 score: 75.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 293..328
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..250
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..161
None	No IPR available	CDD	cd13170	RanBD_NUP50	coord: 330..449 e-value: 7.36958E-29 score: 108.074

Blast

[Close]

BLAST of TCONS_00072110-protein vs. Swiss-Prot (Human)
Match: NUP50 (Nuclear pore complex protein Nup50 OS=Homo sapiens GN=NUP50 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 2.481e-48
Identity = 150/485 (30.93%), Postives = 228/485 (47.01%), Query Frame = 0

Query:    6 KRAADNYLTHDNWDQEDDSEEPEDPGVFKPADEEVLAQRTIRKAKRR--GLSSASSGEEKSNPFAKFGGFGGGNTSTPTLTFGAAKVITPAKPVAPLAAMNTNKSTQNNFWGNKTEDQKKDFFSNRKPANEKPLNESATSDTNNNSDKENGSNKKTDEN-----FQKELCQLNMSVLRFIQKNLDDNPVIDLQPVFNDYKKHIEVLNAKYELEASSTESDASTKTESKPEPT--------QAS---FKTPLTSKTPESALASAP-------AVSSAAPPFSFK-------------------SSTPIPANPFGELKTNSVFNAAASPFSFKPSAASSATTTGGTSTKVPETVKEENADDEDKVPEPERKTVVE---SDAFHTTRCKLFFKKGAEWKELGIGMLYLKPGSDDTKVQLLVRMETSTGKVLINVTVTNDTPTSRSGKNNVMVVTIPNPPVFSKPEEGDNGKPCTYLIRVKGTTEADEL 443
            KR A+  LT  NWDQED++EE    G F  A EEVL  R I+KAKRR  G  S + G         F GF G    +    F         KP+  L+  N   S           D K  F S         +++ +   TN +S + + S   + +      + K+L  LN SV  +I K+++ NP+ DL P+F DY+K++  +  ++     ++ES+++        P+        Q S   F    T  TP+  +  A        ++ + +  F+F                    S +P  ++ FG+  T S     +SPF  KP    +   +G           E    DE++  EP +  V E    DAF++ +CKLF+KK  E+KE GIG L+LKP ++  K QLLVR +T+ G +L+NV +  + P +R+GKNNV++V +PNPP+    +E +   P T LIRVK + +ADEL
Sbjct:    3 KRNAEKELTDRNWDQEDEAEEV---GTFSMASEEVLKNRAIKKAKRRNVGFESDTGG--------AFKGFKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANGPTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNSSLFGKDTTQS--KPVSSPFPTKPLEGQAEGDSG-----------ECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKLFYKKDNEFKEKGIGTLHLKPTANQ-KTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNPPI----DEKNATMPVTMLIRVKTSEDADEL 458

The following BLAST results are available for this feature:

BLAST of TCONS_00072110-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00072110-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NUP50	2.481e-48	30.93	Nuclear pore complex protein Nup50 OS=Homo sapiens...	[more]

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TCONS_00072110-protein (polypeptide) - C. hemisphaerica