TCONS_00072054-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072054-protein
Unique NameTCONS_00072054-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length111

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072054-protein ID=TCONS_00072054-protein|Name=TCONS_00072054-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
RDCVEIAQREDLDAFMISLDQTKAFDRVSWNFLFKLLHKMKFGSKFIRWI
KLLYTNISSNVKINGVTSKSFLLERGVRQGCPLSPLLYVLYSEIIALLVN
TDPEIKGICVN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044750XLOC_044750Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072054TCONS_00072054Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.270coord: 1..109
e-value: 1.5E-16
score: 60.0
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 16..99
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 3..100
e-value: 2.8E-21
score: 76.0
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..111
score: 8.937

Blast
[Close]
BLAST of TCONS_00072054-protein vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.174e-19
Identity = 38/104 (36.54%), Postives = 66/104 (63.46%), Query Frame = 0 
Query:    5 EIAQREDLDAFMISLDQTKAFDRVSWNFLFKLLHKMKFGSKFIRWIKLLYTNISSNVKINGVTSKSFLLERGVRQGCPLSPLLYVLYSEIIALLVNTDPEIKGI 108
             I + +D +  +IS+D  KAFD++   F+ K L+K+     +++ I+ +Y   ++N+ +NG   ++F L+ G RQGCPLSPLL+ +  E++A  +  + EIKGI
Sbjct:  585 HINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGI 688
The following BLAST results are available for this feature:
BLAST of TCONS_00072054-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LORF22.174e-1936.54LINE-1 retrotransposable element ORF2 protein OS=H... [more]
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