TCONS_00071308-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00071308-protein
Unique Name	TCONS_00071308-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	460

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00071308-protein ID=TCONS_00071308-protein|Name=TCONS_00071308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=460bp
LAFIKVEIYKKEKEDLSKTKIIMDVNISENVLEKLSNLYKLKKDEVKKIL
STPPQSAVIRVNINLININDAIEVCKSFLKNCDTHYSVKIHPQIKDALII
EPKNFENKPEPLQKEIIVDSSCGTAVLRGADIFVPGVLAANSNVVAGDLV
SVYCDVKKKCRKGFTKHFDGEKFYLGNGKALFSRWQLFEENDVDKNDVCG
VAIKMGESKFNLPSFHNLQPDLFFPQNLPSIIVGHLLDIEENDLVLDMCA
APGGKTSHLATLLRKGKLISIDKTQNKVDRIKENLRKLKLNNVECHCYDS
TKILCNEDENESDENGPPFPSSTFDRILLDPPCSGLGQRPQLRYTFSDKE
LASYPILQKKFFKQAVPLLKTGGTLVFSTCTLCPEENEAQVAWALQSFSD
LSLVEQEIRIGSIGLAGYGLSDEQREKVQRFDAVFNNYTRTDIYNDSIGF
FIAKFVKRER

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044315	XLOC_044315	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00071308	TCONS_00071308	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023267	RCMT
IPR002478	PUA
IPR001678	MeTrfase_RsmB/NOP2
IPR029063	SAM-dependent_MTases
IPR015947	PUA-like_domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0008168	methyltransferase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003723	RNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 271..291
None	No IPR available	GENE3D	3.40.50.150		coord: 226..460 e-value: 1.3E-53 score: 181.2
None	No IPR available	CDD	cd02440	AdoMet_MTases	coord: 245..378 e-value: 1.13059E-8 score: 51.6619
IPR023267	RNA (C5-cytosine) methyltransferase	PRINTS	PR02008	RCMTFAMILY	coord: 372..388 score: 58.57 coord: 440..457 score: 29.47 coord: 246..256 score: 80.66 coord: 325..337 score: 70.32
IPR002478	PUA domain	GENE3D	2.30.130.10		coord: 112..206 e-value: 2.1E-10 score: 40.0
IPR002478	PUA domain	PROSITE	PS50890	PUA	coord: 113..206 score: 10.287
IPR001678	SAM-dependent methyltransferase RsmB/NOP2-type	PFAM	PF01189	Methyltr_RsmB-F	coord: 236..409 e-value: 2.6E-42 score: 144.6
IPR001678	SAM-dependent methyltransferase RsmB/NOP2-type	PROSITE	PS51686	SAM_MT_RSMB_NOP	coord: 148..458 score: 44.985
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase	SUPERFAMILY	53335	S-adenosyl-L-methionine-dependent methyltransferases	coord: 208..457
IPR015947	PUA-like domain	SUPERFAMILY	88697	PUA domain-like	coord: 113..190

Blast

[Close]

BLAST of TCONS_00071308-protein vs. Swiss-Prot (Human)
Match: NSUN6 (Putative methyltransferase NSUN6 OS=Homo sapiens GN=NSUN6 PE=1 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.448e-109
Identity = 189/428 (44.16%), Postives = 259/428 (60.51%), Query Frame = 0

Query:   48 KILSTPPQSAVIRVNINLININDAIEVCKSFLKNCDTHYSVKI--HPQIKDALIIEPKNFENKPEPLQKEIIVDSSCGTAVLRGADIFVPGVLAANSNVVAGDLVSVYCDVKKKCRKGFTKHFDGEKFYLGNGKALFSRWQLFEENDVDKNDVCGVAIKMGESKFNLPSFHNLQPDLFFPQNLPSIIVGHLLDIEENDLVLDMCAAPGGKTSHLATLLR-KGKLISIDKTQNKVDRIKENLRKLKLNNVECHCYDSTKILCNEDENESDENGPPFPSSTFDRILLDPPCSGLGQRPQLRYTFSDKELASYPILQKKFFKQAVPLLKTGGTLVFSTCTLCPEENEAQVAWALQSFSDLSLVEQEIRIGSIGLAGYGLSDEQREKVQRFDAVFNNYTRTDIYN---------------DSIGFFIAKFVK 457
            K LS PP    +RVN +L ++     +    L+      SV I  HP ++D L+I         +  Q E IV + CG AVLRGA ++ PG+++A+  + AGD++SVY D+K KC+KG  K FDG K +LGNG +  SR ++F        ++ G+ I+M E  +  PSF ++ P   F QNLPS +V H+L+ +  + +LD+CAAPGGKT+H+A L+  +G++I++DK  NKV++IK+N   L LN++   C+D TK +   D  E  E  PPF   +FDRILLD PCSG+GQRP +  T+S KE+ASY  LQ+K F  AV LLK  G LV+STCT+   ENE QVAWAL  F  L L  QE +IG  G+ G GLS EQ +++QRFD        TD+ +               DSIGFFIAKFVK
Sbjct:   44 KHLSHPPSFTTVRVNTHLASVQHVKNLLLDELQKQFNGLSVPILQHPDLQDVLLIPVIGPRKNIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVSASQFMKAGDVISVYSDIKGKCKKG-AKEFDGTKVFLGNGISELSRKEIFS----GLPELKGMGIRMTEPVYLSPSFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAV-KLDMVEDTEGEPPFLPESFDRILLDAPCSGMGQRPNMACTWSVKEVASYQPLQRKLFTAAVQLLKPEGVLVYSTCTITLAENEEQVAWALTKFPCLQLQPQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTDMDSLREARREDMLRLANKDSIGFFIAKFVK 465

The following BLAST results are available for this feature:

BLAST of TCONS_00071308-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00071308-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NSUN6	1.448e-109	44.16	Putative methyltransferase NSUN6 OS=Homo sapiens G...	[more]

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TCONS_00071308-protein (polypeptide) - C. hemisphaerica