TCONS_00071246-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071246-protein
Unique NameTCONS_00071246-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length497

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071246-protein ID=TCONS_00071246-protein|Name=TCONS_00071246-protein|organism=Clytia hemisphaerica|type=polypeptide|length=497bp
MSTMTLTTTEHNFGPMRGLPSHRFKPEKGPLIGPIDTLQETPGELVKTDS
PNFVCSVLPAHWRCNKTLPVAFKVVGLSGDIPDGVTVTISAGNDDNFSAE
LRNATAIMKNQVARFNDLRFVGRSGRGKTFTITISVNTDPPQVATYMRAI
KVTVDGPREPRRHRRNDDRDGGFVDHYGLRMGELGIEHFRGNIPFSDLHH
PSMPPNSFPPHLPGEIGMRSPSSWGGHYNFPSGGSGGGAGYGHNLSPTNS
DSYTGGGGGIVHNNSYNQQSLQLSSLKSSGGSTTGTNNNNNNTINNNNND
MSPLPGNYTDQRMFNSQLSHRTSPSNSTGANSPPQSLSNTYHESSAINGT
GGGGLQCGGNHHTYQNSNMHGGSTTNPAHSFLGTNSVTINNNYLMNVSPG
GSLNLPLPKQYTSPNGGGGGGGRTIEEDANNNQLSHLNVYRSPPTLYDVH
SGSYGGYQSNLKHGYEGHSLDQNGNVNGHHGEELDENGSTPKVWRPY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044286XLOC_044286Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071246TCONS_00071246Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000040AML1_Runt
IPR012346p53/RUNT-type_TF_DNA-bd
IPR013524Runt_dom
IPR008967p53-like_TF_DNA-bd
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0005524ATP binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000040Acute myeloid leukemia 1 protein (AML1)/RuntPRINTSPR00967ONCOGENEAML1coord: 32..51
score: 46.36
coord: 94..115
score: 83.47
coord: 116..137
score: 81.82
coord: 138..160
score: 88.54
coord: 51..72
score: 88.43
IPR012346p53/RUNT-type transcription factor, DNA-binding domainGENE3D2.60.40.720coord: 34..165
e-value: 2.6E-68
score: 227.0
IPR013524Runt domainPFAMPF00853Runtcoord: 36..163
e-value: 5.3E-66
score: 220.0
IPR013524Runt domainPROSITEPS51062RUNTcoord: 33..162
score: 63.738
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 463..497
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 239..377
IPR008967p53-like transcription factor, DNA-bindingSUPERFAMILY49417p53-like transcription factorscoord: 36..162

Blast
[Close]
BLAST of TCONS_00071246-protein vs. Swiss-Prot (Human)
Match: RUNX1 (Runt-related transcription factor 1 OS=Homo sapiens GN=RUNX1 PE=1 SV=3)

HSP 1 Score: 238.81 bits (608), Expect = 3.108e-73
Identity = 115/173 (66.47%), Postives = 135/173 (78.03%), Query Frame = 0 
Query:   35 IDTLQETPGELVKTDSPNFVCSVLPAHWRCNKTLPVAFKVVGLSGDIPDGVTVTISAGNDDNFSAELRNATAIMKNQVARFNDLRFVGRSGRGKTFTITISVNTDPPQVATYMRAIKVTVDGPREPRRHRRN-DDRDGGFVDHYGLRMGELGIEHFRGNIPFSDLHHPSMPPN 206
            ++ L + PGELV+TDSPNF+CSVLP HWRCNKTLP+AFKVV L GD+PDG  VT+ AGND+N+SAELRNATA MKNQVARFNDLRFVGRSGRGK+FT+TI+V T+PPQVATY RAIK+TVDGPREPRRHR+  DD+       +  R+ EL  E  R        HHP+  PN
Sbjct:   52 VEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVAL-GDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSEL--EQLRRTAMRVSPHHPAPTPN 221
The following BLAST results are available for this feature:
BLAST of TCONS_00071246-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RUNX13.108e-7366.47Runt-related transcription factor 1 OS=Homo sapien... [more]
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