TCONS_00071223-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00071223-protein
Unique Name	TCONS_00071223-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	585

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00071223-protein ID=TCONS_00071223-protein|Name=TCONS_00071223-protein|organism=Clytia hemisphaerica|type=polypeptide|length=585bp
RILTSNSNMASSAVSTDPKKNETQNKRVDWKKQKELEEARKAGTAPPEVD
EEGRDINPHIPQYITSVPWYVGENRPTLKHQRVQPEKIKEVANISAYYKK
GVKEISATKFRKGACQNCGALTHKKKDCLERPRRVGAKFSGEDIKPDELL
PGELKFDFDGKRDRWAAYDVKVHHKVLEEYARVDEAKRQLKAAKLEEELE
SGNLDIIKTINKEDDEEEDKYADQVDMPGQKFDSNVRQTVRNLRIREDTA
KYLHNLDQNSAFYDPKTRSMRESPFNKNGDKGKNVNYYGDNFVRASGNVK
DVANAQLFAWEAYEQGSDVHLQADPTKLELLHKTYKVKKDNYKEDQKEGV
LAKYGGAEHLEAPPKELLLAQTEEYVEYSRTGKVVKGQEKAIVSSKYEED
VYLNNHTSVWGSFWETFRWGYACCHSFIKQSYCTGEAGKVARNTDTPLDR
VTLFQRKGGQEEDKEENEEEGKEGEKSGKKSLVEMHREKLAEEKSNKKKN
KKKGKDDDDEDGDKESKKEKLRKALEAEDERNRKMDEVLKLDERKRGYNS
LNLNNAEPTVEEMEAYRMKRSLQDDPMAQFMKKKR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044277	XLOC_044277	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00071223	TCONS_00071223	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR021715	Slu7

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 176..196
None	No IPR available	COILS	Coil	Coil	coord: 483..503
None	No IPR available	COILS	Coil	Coil	coord: 20..40
None	No IPR available	COILS	Coil	Coil	coord: 517..544
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 455..537
IPR021715	Pre-mRNA splicing Prp18-interacting factor	PFAM	PF11708	Slu7	coord: 157..412 e-value: 3.6E-99 score: 331.8

Blast

[Close]

BLAST of TCONS_00071223-protein vs. Swiss-Prot (Human)
Match: SLU7 (Pre-mRNA-splicing factor SLU7 OS=Homo sapiens GN=SLU7 PE=1 SV=2)

HSP 1 Score: 634.41 bits (1635), Expect = 0.000e+0
Identity = 338/577 (58.58%), Postives = 419/577 (72.62%), Query Frame = 0

Query:   27 RVDWKKQKELEEARKAGTAPPEVDEEGRDINPHIPQYITSVPWYVGEN-RPTLKHQRVQPEKIKEVANISAYYKKGVKEISA-TKFRKGACQNCGALTHKKKDCLERPRRVGAKFSGEDIKPDELLPGELKFDFDGKRDRWAAYDVKVHHKVLEEYARVDEAKRQLKAAKLEEELESGNL-----------------DIIKTINKEDDEEEDKYADQVDMPGQKFDSNVRQTVRNLRIREDTAKYLHNLDQNSAFYDPKTRSMRESPFNKNGDKGKNVNYYGDNFVRASGNVKDVANAQLFAWEAYEQGSDVHLQADPTKLELLHKTYKVKKDNYKEDQKEGVLAKYGGAEHLEAPPKELLLAQTEEYVEYSRTGKVVKGQEKAIVSSKYEEDVYLNNHTSVWGSFWETFRWGYACCHSFIKQSYCTGEAGK-VARNTDTPLDRVTLFQRKGGQEEDKEENEEEGKEGEKSGKK--SLVEMHREKLAEEKSNKKKNKKKGKDDDDEDGDKESKKEKLRKALEAEDERNRKMDEVLKLDERKRGYNSLNLNNAEPTVEEMEAYRMKRSLQDDPMAQFM 581
            R DW+K+KELEE RK G AP EVDEEG+DINPHIPQYI+SVPWY+  + RPTLKHQR QPEK K+ ++   +YK+GVKE S  TK+RKGAC+NCGA+THKKKDC ERPRRVGAKF+G +I PDE +  +L FD+DGKRDRW  Y+ + H K++EEYA+VD AKR LKA KL+EEL SG L                   ++  +  +DE+EDKYAD +DMPGQ FDS  R TVRNLRIRED AKYL NLD NSA+YDPKTR+MRE+P+   G     V+Y GDNFVR +G+   +A  QLFAWEAY++GS+VHLQADPTKLELL+K++KVKK+++KE QKE +L KYGG EHL+APP ELLLAQTE+YVEYSR G V+KGQE+A+  SKYEEDV ++NHT +WGS+W+  RWGY CCHSF K SYCTGEAGK +  + +  ++ +T                     GE+S KK  +L+E+H+EKL EEK  KKK KKK +    +  D+E K EKL+KAL AE+ R   + E +++DERKR YNS+     EPT EEMEAYRMKR   DDPMA F+
Sbjct:   30 REDWRKKKELEEQRKLGNAPAEVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSIITKYRKGACENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMKIVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQMEKDHNSEDEDEDKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANAGKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVKKEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQERAVACSKYEEDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIVNSEECIINEIT---------------------GEESVKKPQTLMELHQEKLKEEKKKKKKKKKKHRKSSSDSDDEEKKHEKLKKALNAEEARLLHVKETMQIDERKRPYNSM-YETREPTEEEMEAYRMKRQRPDDPMASFL 584

The following BLAST results are available for this feature:

BLAST of TCONS_00071223-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00071223-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SLU7	0.000e+0	58.58	Pre-mRNA-splicing factor SLU7 OS=Homo sapiens GN=S...	[more]

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TCONS_00071223-protein (polypeptide) - C. hemisphaerica