TCONS_00070679-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070679-protein
Unique NameTCONS_00070679-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length290

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070679-protein ID=TCONS_00070679-protein|Name=TCONS_00070679-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
MANPKRPIGTASPNTINAVVPMCTNQSSSSKHGSSSPNNPDLASLFECPV
CFDYVLPPIFQCSSGHLVCSNCRPKLAGICPTCRGPLGSIRNLAMEKVAN
TVLFPCRYANNGCIVALPHTQKSEHEEGCEFRPYACPCPGASCKWQGSLD
AVMPHLVHAHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLV
LEKQERFEGHQQFFAVVQLIGSRKQAENFAYRLELNGRRRRLAWEATPRS
IHDGIQSAIINSDCLVFDTSIAQLFAEAGNLGINVTISMC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043972XLOC_043972Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070679TCONS_00070679Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008974TRAF-like
IPR0181217-in-absentia-prot_TRAF-dom
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
IPR013010Znf_SIAH
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO:0007275multicellular organism development
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007275 multicellular organism development
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008974TRAF-likeGENE3D2.60.210.10coord: 159..288
e-value: 6.9E-57
score: 190.3
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 102..289
NoneNo IPR availableGENE3D1.10.1170.10coord: 19..95
e-value: 1.2E-6
score: 28.4
NoneNo IPR availableCDDcd03829Sinacoord: 163..289
e-value: 5.79407E-83
score: 247.3
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 39..90
IPR018121Seven-in-absentia protein, TRAF-like domainPFAMPF03145Sinacoord: 90..286
e-value: 2.8E-85
score: 285.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 96..156
e-value: 7.0E-10
score: 38.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 48..84
score: 9.052
IPR013010Zinc finger, SIAH-typePROSITEPS51081ZF_SIAHcoord: 101..161
score: 16.276

Blast
[Close]
BLAST of TCONS_00070679-protein vs. Swiss-Prot (Human)
Match: SIAH1 (E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens GN=SIAH1 PE=1 SV=2)

HSP 1 Score: 474.552 bits (1220), Expect = 3.368e-171
Identity = 227/285 (79.65%), Postives = 251/285 (88.07%), Query Frame = 0 
Query:    6 RPIGTASPNTINAVVPMCTNQSSSSKHGSSSPNNPDLASLFECPVCFDYVLPPIFQCSSGHLVCSNCRPKLAGICPTCRGPLGSIRNLAMEKVANTVLFPCRYANNGCIVALPHTQKSEHEEGCEFRPYACPCPGASCKWQGSLDAVMPHLVHAHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQERFEGHQQFFAVVQLIGSRKQAENFAYRLELNGRRRRLAWEATPRSIHDGIQSAIINSDCLVFDTSIAQLFAEAGNLGINVTISMC 290
            R   TA P   +   P   +Q   +  G+++ NN DLASLFECPVCFDYVLPPI QC SGHLVCSNCRPKL   CPTCRGPLGSIRNLAMEKVAN+VLFPC+YA++GC + LPHT+K++HEE CEFRPY+CPCPGASCKWQGSLDAVMPHL+H HKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFG HFMLVLEKQE+++GHQQFFA+VQLIG+RKQAENFAYRLELNG RRRL WEATPRSIH+GI +AI+NSDCLVFDTSIAQLFAE GNLGINVTISMC
Sbjct:    3 RQTATALPTGTSKCPP---SQRVPALTGTTASNN-DLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKLT-CCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC 282
The following BLAST results are available for this feature:
BLAST of TCONS_00070679-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SIAH13.368e-17179.65E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens ... [more]
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