TCONS_00069336-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00069336-protein
Unique Name	TCONS_00069336-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	333

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00069336-protein ID=TCONS_00069336-protein|Name=TCONS_00069336-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
YQTIKKLNHKLPPTMSIYRNVIWFTKGIREYCKSGYEHAAKTFESLEGVR
LEGRSYMITGANSGIGKEAALKIASMGGIVHLVCRNEQRGQEALKEIKTQ
SGSEEVHLHLLDMSQSREVHKFTKDFTESGRPLNVLINNAGCMVNTRELN
EEGVEKNFATNTLGTYLLTTGLINHLQNSESPQVITVSSGGMLVNKLDSS
DFNFEQMNPFDGTMAYSQNKRQQIEMTDYWAVQYPNIQFTTMHPGWADTP
AVRNSMPDFYEKMKNRLRTTEQGADTIVWLATSSTARKAPSGGFYQDRTP
VSKHLPLAWTKSSEKERRVFTEKLETLASKFRS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043210	XLOC_043210	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00069336	TCONS_00069336	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002347	SDR_fam
IPR016040	NAD(P)-bd_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00081	GDHRDH	coord: 235..252 score: 24.73 coord: 131..142 score: 44.67 coord: 55..72 score: 38.35 coord: 263..283 score: 22.99 coord: 216..235 score: 21.32
IPR002347	Short-chain dehydrogenase/reductase SDR	PFAM	PF00106	adh_short	coord: 57..254 e-value: 2.1E-25 score: 89.3
None	No IPR available	GENE3D	3.40.50.720		coord: 38..333 e-value: 3.3E-49 score: 167.0
IPR016040	NAD(P)-binding domain	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 50..285

Blast

[Close]

BLAST of TCONS_00069336-protein vs. Swiss-Prot (Human)
Match: DHR12 (Dehydrogenase/reductase SDR family member 12 OS=Homo sapiens GN=DHRS12 PE=2 SV=2)

HSP 1 Score: 352.829 bits (904), Expect = 6.677e-122
Identity = 178/320 (55.62%), Postives = 232/320 (72.50%), Query Frame = 0

Query:   15 MSIYRNVIWFTKGIREYCKSGYEHAAKTF--ESLEGVRLEGRSYMITGANSGIGKEAALKIASMGGIVHLVCRNEQRGQEALKEIKTQSGSEEVHLHLLDMSQSREVHKFTKDFTESGRPLNVLINNAGCMVNTRELNEEGVEKNFATNTLGTYLLTTGLINHLQNSESPQVITVSSGGMLVNKLDSSDFNFEQMNPFDGTMAYSQNKRQQIEMTDYWAVQYPNIQFTTMHPGWADTPAVRNSMPDFYEKMKNRLRTTEQGADTIVWLATSSTARKAPSGGFYQDRTPVSKHLPLAWTKSSEKERRVFTEKLETLASKFR 332
            MS+YR+V+WF KG+REY KSGYE A K F    LE V++ GR +++TG NSGIGK  AL+IA  GG VHLVCR++   ++A  EI  +SG++ + LH++D+S  +++ KF ++F +  + L+VLINNAGCMVN REL E+G+EKNFA NTLG Y+LTTGLI  L+    P+VITVSSGGMLV KL+++D   E+  PFDGTM Y+QNKRQQ+ +T+ WA  +P I F++MHPGWADTP VR +MP F+ +  +RLR+  QGADT++WLA SS A   PSG F+QDR PVS HLPLA   SS  E     E LE LA  F+
Sbjct:    1 MSLYRSVVWFAKGLREYTKSGYESACKDFVPHDLE-VQIPGRVFLVTGGNSGIGKATALEIAKRGGTVHLVCRDQAPAEDARGEIIRESGNQNIFLHIVDLSDPKQIWKFVENFKQEHK-LHVLINNAGCMVNKRELTEDGLEKNFAANTLGVYILTTGLIPVLEKEHDPRVITVSSGGMLVQKLNTNDLQSER-TPFDGTMVYAQNKRQQVVLTERWAQGHPAIHFSSMHPGWADTPGVRQAMPGFHARFGDRLRSEAQGADTMLWLALSSAAAAQPSGRFFQDRKPVSTHLPLATASSSPAEEEKLIEILEQLAQTFK 317

The following BLAST results are available for this feature:

BLAST of TCONS_00069336-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00069336-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DHR12	6.677e-122	55.63	Dehydrogenase/reductase SDR family member 12 OS=Ho...	[more]

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TCONS_00069336-protein (polypeptide) - C. hemisphaerica