TCONS_00069153-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00069153-protein
Unique Name	TCONS_00069153-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	727

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00069153-protein ID=TCONS_00069153-protein|Name=TCONS_00069153-protein|organism=Clytia hemisphaerica|type=polypeptide|length=727bp
MLTITIFLFFAVVGQLSTFDINLPEASHRYRREISDSKTIPPICKSHLNE
EAKKKMEKNEFPLKSDKNNDVALVWLGDNLETQILLTTVNTLSSHFLSIF
NIFGKHESPSNIYRSTDGGKSFQNIEINIGKEAIRSEAGIFKSPVDPKMM
ILVSKVSRSFFSVFSKDENKDHGALIVTKDSAATFEINKLPFDLREGDSI
RFHPKRKDWIIALEKPTVLIAFGKSKKTGTAHLSTDFGKTWTPIMKDEIL
EEIKWGTMKGHEDEIFAMTKVVGGFSFVMHGFGTAGKNALYKTKINPSDP
KKFAFKKVVESVESFGIQDEFVFATVVIEKDDGDDERIIHVSKDSGETFN
VIHFPRITTDKFFAVMEMYKGLIFLHEDGDGDTGKGTLYISGPEGRVYEK
SLKDHFYTNQRLTDFYKVQSMPGVYITQRLIADNTLKSVITFDRGVKWRP
LYVERSVYCTDKKYKDTKVDCSLHFHHIYSRRQSHSVAQYVQSPISSPSA
PGLILVHGVAGDGLTGKMNVWMSKNGGYNWIEVAKGPHHYAIGDNGNLII
LVPKLNATGTTLKYSIDQGRCWHEFEFTSKNQPLQIQGLVTEPHSQERSF
SLWGLRKDAKYEDKEWIIVTVDFGKMLDKTCALSDFENWSPHKLNGKDGC
FLGEKITYKRPKEDSICHVGRKFNPVVATTKCPCTVADFVCDYGYKRDSS
NKCIRDKTKSLMFCVNGEEELESPSKG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043105	XLOC_043105	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00069153	TCONS_00069153	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006581	VPS10
IPR031778	Sortilin_N
IPR031777	Sortilin_C
IPR015943	WD40/YVTN_repeat-like_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006581	VPS10	SMART	SM00602	vps10	coord: 99..726 e-value: 1.7E-83 score: 293.4
IPR031778	Sortilin, N-terminal	PFAM	PF15902	Sortilin-Vps10	coord: 110..582 e-value: 2.8E-85 score: 286.7
IPR031777	Sortilin, C-terminal	PFAM	PF15901	Sortilin_C	coord: 591..710 e-value: 6.4E-31 score: 107.9
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 106..634 e-value: 4.2E-43 score: 147.5
None	No IPR available	SUPERFAMILY	110296	Oligoxyloglucan reducing end-specific cellobiohydrolase	coord: 106..250 coord: 313..378 coord: 426..626

Blast

[Close]

BLAST of TCONS_00069153-protein vs. Swiss-Prot (Human)
Match: SORT (Sortilin OS=Homo sapiens GN=SORT1 PE=1 SV=3)

HSP 1 Score: 324.709 bits (831), Expect = 2.334e-99
Identity = 212/664 (31.93%), Postives = 341/664 (51.36%), Query Frame = 0

Query:   66 DKNNDVALVWLGDNLETQILLTTVNTLSSHFLSIFNIFGKHESPSNIYRSTDGGKSFQNIEINIGKEAIRSEAGIFKSPVDPKMMILVSKVSRSFFSVFSKDENKDHGALIVTKDSAATFEINKLPFDLREGDSIRFHPKRKDWIIALEKPTVLIAFGKSKKTGTAHLSTDFGKTWTPIMKDEILEEIKWGTMKGHEDEIFAMTKVVGGFSFVMHGFGTAGKNALYKTKINPSDPKKFAFKKVVESVESFGIQDEFVFATVVIEKDDGDDERIIHVSKDSGETFNVIHFPRITTDKFFAVMEMYKGLIFLHEDGDGDTGKGTLYISGPEGRVYEKSLKDHFYTNQ-RLTDFYKVQSMPGVYITQRLIADNTLKSVITFDRGVKWRPLYVERSVYCTDKKYKDTKVDCSLHFHHIYSRRQSHSVAQYVQSPISSPSAPGLILVHGVAGDGLTGKM-NVWMSKNGGYNWIEVAKGPHHYAIGDNGNLIILVPKLNATGTTLKYSIDQGRCWHEFEFTSKNQPLQIQGLVTEPHSQERSFSLWGLRKDAKYEDKEWIIVTVDFGKMLDKTCALSDFENWSPHKLNG---KDGCFLGEKITYKRPKEDSICHVGRKFNPVVATTKCPCTVADFVCDYGYKR-DSSNKCIRD---KTKSLMFCVNGEEE 720
            D    V+L W+GD+    ++LTT      H   +   FG+    S +YRS D GK+F++I   I    IR+E G+   P +   ++L ++VS               G +  + D A  F    LPF       + + P+  D+++AL     L             +S +FG  W  I K   L   KWG+    ++ IF  T   G            G   L++T    SD  K +FK +   + SFG+   F+FA+V+ +KD     R IHVS D G+T+++   P +  ++F++++     ++F+H D  GDTG GT++ S   G VY KSL  H YT     TDF  V S+ GVYIT  L  DN+++++ITFD+G +W  L    +  C D   K+ K +CSLH H  YS  Q  +V     +P+S P+A G+++ HG  GD ++  + +V++S +GGY+W ++ +GPH+Y I D+G +I+ +   +     +K+S D+G+CW  + FT    P+   GL +EP ++  + S+WG  +   +   +W+  T+DF  +L++ C   D+  W  H  +    +DGC LG K  + R ++ S+C  GR +      + C C++ DF+CD+GY R ++ +KC+     K   L FC+ G EE
Sbjct:  107 DLRGSVSLSWVGDSTGVILVLTTF-----HVPLVIMTFGQ----SKLYRSEDYGKNFKDITDLINNTFIRTEFGMAIGPENSGKVVLTAEVS----------GGSRGGRIFRSSDFAKNFVQTDLPF--HPLTQMMYSPQNSDYLLALSTENGL------------WVSKNFGGKWEEIHKAVCLA--KWGS----DNTIFFTTYANGSCK------ADLGALELWRT----SDLGK-SFKTIGVKIYSFGLGGRFLFASVMADKDT---TRRIHVSTDQGDTWSMAQLPSVGQEQFYSILAANDDMVFMHVDEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGETDFTNVTSLRGVYITSVLSEDNSIQTMITFDQGGRWTHLRKPENSEC-DATAKN-KNECSLHIHASYSISQKLNVP---MAPLSEPNAVGIVIAHGSVGDAISVMVPDVYISDDGGYSWTKMLEGPHYYTILDSGGIIVAIEHSSRPINVIKFSTDEGQCWQTYTFT--RDPIYFTGLASEPGARSMNISIWGFTE--SFLTSQWVSYTIDFKDILERNCEEKDYTIWLAHSTDPEDYEDGCILGYKEQFLRLRKSSVCQNGRDYVVTKQPSICLCSLEDFLCDFGYYRPENDSKCVEQPELKGHDLEFCLYGREE 708

The following BLAST results are available for this feature:

BLAST of TCONS_00069153-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00069153-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
SORT	2.334e-99	31.93	Sortilin OS=Homo sapiens GN=SORT1 PE=1 SV=3	[more]

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TCONS_00069153-protein (polypeptide) - C. hemisphaerica

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