TCONS_00069005-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00069005-protein
Unique NameTCONS_00069005-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00069005-protein ID=TCONS_00069005-protein|Name=TCONS_00069005-protein|organism=Clytia hemisphaerica|type=polypeptide|length=384bp
MVSQEEQEETEGNKTNIEEEGGENEEPTIIEETPPEEQKSNAGNAAESVL
EIMVMFLEGESPDLRTSVAEGMAKLLISGRIVSAKILTRLILLWYNPITE
DDIKLRHCIGVFLPLFSFENRSHQEIYEETFLPVLKTLLNAPTSSPLSRV
DVTNVVDLLIQLTDVRNLVQFNVTTDTSQNNLLNSLETHVHDSLAMRLAN
EILSDPEDPDVKLFCKTLTQLAICPKNVATIRDLIELSSQITEVFEGNRV
AKKSIEKFQSTLERLLIDGGGSMSSTGQESQDATVPPAVEANSTPIADLD
SGARNNTLTDTDADKTLTETENELPPNKHKLSSSSEKIASKSKRSKIQDS
RVSSASVDFRVNPKDSTVEVEDEDEEMESEGEEE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042995XLOC_042995Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00069005TCONS_00069005Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR025977Cnd3_C
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 35..379
e-value: 2.3E-6
score: 25.9
IPR025977Nuclear condensin complex subunit 3, C-terminal domainPFAMPF12719Cnd3coord: 32..223
e-value: 6.1E-46
score: 156.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 292..384
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 46..233

Blast
[Close]
BLAST of TCONS_00069005-protein vs. Swiss-Prot (Human)
Match: CND3 (Condensin complex subunit 3 OS=Homo sapiens GN=NCAPG PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 7.194e-55
Identity = 104/240 (43.33%), Postives = 162/240 (67.50%), Query Frame = 0 
Query:   46 AESVLEIMVMFLEGESPDLRTSVAEGMAKLLISGRIVSAKILTRLILLWYNPITEDDIKLRHCIGVFLPLFSFENRSHQEIYEETFLPVLKTLLNAPTSSPLSRVDVTNVVDLLIQLTDVRNLVQFNVTTDTSQNNLLNSLETHVHDSLAMRLANEILSDPEDPDVKLFCKTLTQLAICPKNVATIRDLIELSSQITEVFEGNRVAKKSIEKFQSTLERLLIDGGGSMSSTGQESQDATV 285
            A++VL+++  FL+ E  +LRT  AEG+AKL+ SG +VS++IL+RLILLWYNP+TE+D++LRHC+GVF P+F++ +R++QE +EE FLP L+TL NAP SSPL+ +D+TNV +LL+ LT    L   N    TSQ+    +L   VHD+LAM++ NEIL+ P  P+++++ K L+ L     +    +DL+ L ++I E  + +R   +++EK +  LE+    G        + +QDAT+
Sbjct:  689 AKNVLKLLSDFLDSEVSELRTGAAEGLAKLMFSGLLVSSRILSRLILLWYNPVTEEDVQLRHCLGVFFPVFAYASRTNQECFEEAFLPTLQTLANAPASSPLAEIDITNVAELLVDLTRPSGL---NPQAKTSQD--YQALT--VHDNLAMKICNEILTSPCSPEIRVYTKALSSLE---LSSHLAKDLLVLLNEILEQVK-DRTCLRALEKIKIQLEK----GNKEFGDQAEAAQDATL 913
The following BLAST results are available for this feature:
BLAST of TCONS_00069005-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CND37.194e-5543.33Condensin complex subunit 3 OS=Homo sapiens GN=NCA... [more]
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