TCONS_00068965-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00068965-protein
Unique Name	TCONS_00068965-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	258

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00068965-protein ID=TCONS_00068965-protein|Name=TCONS_00068965-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
MVDISEIGITYHLSTENIISGQLDDFANLTKEFFDNLTKVYSQRGRPPTN
TEALNKIGEDLAYKGNDLKKSLQTAIEQINVCKDIDKVKEEITKVEKEIL
QTHSQLKEAEKILAVAVFQAKKKLEAGKQAKSASVSCEDLIKFAFRISSG
NSVEAPQDWKPEDPRRPYPLDIEMRSGTLGQLSLKNGDAMTVDENNTEDN
KTGGLWQGTSSTDDKVHLATMPSALLSNVNKTSSQQANNEEVEFMSTSSD
SSSSGDST

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_042977	XLOC_042977	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00068965	TCONS_00068965	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019258	Mediator_Med4

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0001104	RNA polymerase II transcription cofactor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 85..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 230..258
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..213
IPR019258	Mediator complex, subunit Med4	PFAM	PF10018	Med4	coord: 59..200 e-value: 1.3E-25 score: 90.1

Blast

[Close]

BLAST of TCONS_00068965-protein vs. Swiss-Prot (Human)
Match: MED4 (Mediator of RNA polymerase II transcription subunit 4 OS=Homo sapiens GN=MED4 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.091e-34
Identity = 64/170 (37.65%), Postives = 108/170 (63.53%), Query Frame = 0

Query:   14 STENIISGQLDDFANLTKEFFDNLTKVYSQRGRPPTNTEALNKIGEDLAYKGNDLKKSLQTAIEQINVCKDIDKVKEEITKVEKEILQTHSQLKEAEKILAVAVFQAKKKLEAGKQAKSASVSCEDLIKFAFRISSGNSVEAPQDWKPEDPRRPYPLDIEMRSGTLGQLS 183
            ST   +   L+D   L++E  + L    +Q+          N++ E L ++  + ++ ++ A+ Q  +  ++  +++E+ K + +I Q   QLKEAE+ILA AV+QAK+KL++ ++A+  ++S E++IK+A RIS+ N+V AP  W P DPRRPYP D+EMRSG LGQ++
Sbjct:   25 STRERLLSALEDLEVLSRELIEMLAISRNQKL---LQAGEENQVLELLIHRDGEFQELMKLALNQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMN 191

The following BLAST results are available for this feature:

BLAST of TCONS_00068965-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00068965-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MED4	5.091e-34	37.65	Mediator of RNA polymerase II transcription subuni...	[more]

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TCONS_00068965-protein (polypeptide) - C. hemisphaerica