TCONS_00068052-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068052-protein
Unique NameTCONS_00068052-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length409

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068052-protein ID=TCONS_00068052-protein|Name=TCONS_00068052-protein|organism=Clytia hemisphaerica|type=polypeptide|length=409bp
MGIERLTMNDSSQYLQQLLGQQPTEGSPQLPVMKSEDEQEYNSNTQNSFM
APEFQYFSQQQNSPTEFTNIQSPSNFSLFNTVASLSPNGMSAANQQALAR
RMNGYHRHPMVPGLMPSHIEQLPDTTIFPGNFSFELSLGPHTESATKSAD
YTFSPSLKKLYVQKGAHCPFKLKTSHQPPPNTYIKILPVYKGSHVLSEPV
RRCSNHAEGDDEGNPRYHFIRANNRQAHYETSDSGRLYLTIPYTGPQVGA
EYQTELLSFMCFNSCGHSSHSKRRIDVIFMLENNGQVLARQVIEVRVCAC
PGRDRNNEEQTTPRGMGTKAGRRGSSVACARGGKRRKLSSINGDEEMCIK
TNNPIHYQILTQIQEVLENNQMAFMQRNTQSPTSIASSPGNVFHPMVGIH
HDSTDEDNS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042482XLOC_042482Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068052TCONS_00068052Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002117p53_tumour_suppressor
IPR012346p53/RUNT-type_TF_DNA-bd
IPR011615p53_DNA-bd
IPR008967p53-like_TF_DNA-bd
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006915apoptotic process
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0044212transcription regulatory region DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006915 apoptotic process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0044212 transcription regulatory region DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002117p53 tumour suppressor familyPRINTSPR00386P53SUPPRESSRcoord: 185..206
score: 40.78
coord: 287..309
score: 67.15
coord: 236..257
score: 39.65
coord: 143..169
score: 43.93
coord: 259..281
score: 22.58
coord: 345..369
score: 21.22
IPR012346p53/RUNT-type transcription factor, DNA-binding domainGENE3D2.60.40.720coord: 119..314
e-value: 9.1E-64
score: 214.5
IPR011615p53, DNA-binding domainPFAMPF00870P53coord: 122..310
e-value: 4.6E-46
score: 156.9
IPR011615p53, DNA-binding domainCDDcd08367P53coord: 134..311
e-value: 5.08389E-76
score: 235.241
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 303..336
IPR008967p53-like transcription factor, DNA-bindingSUPERFAMILY49417p53-like transcription factorscoord: 122..309

Blast
[Close]
BLAST of TCONS_00068052-protein vs. Swiss-Prot (Human)
Match: P73 (Tumor protein p73 OS=Homo sapiens GN=TP73 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 8.297e-42
Identity = 99/269 (36.80%), Postives = 144/269 (53.53%), Query Frame = 0 
Query:  122 LPDTTIFPGNFSFELSLGPHTESATKSADYTFSPSLKKLYVQKGAHCPFKLKTSHQPPPNTYIKILPVYKGSHVLSEPVRRCSNHAEGDD--EGN--PRYHFIR--ANNRQAHYETSDSGRLYLTIPYTGPQVGAEYQTELLSFMCFNSCGHSSHSKRRIDVIFMLE-NNGQVLARQVIEVRVCACPGRDRNNEEQ-----------TTPRGMGTKAGRRGSSVAC---ARGGKRRKLSSINGDEEM-CIKTNNPIHYQILTQIQEVLE 368
            +P  T +PG   FE++      S  KSA +T+SP LKKLY Q    CP ++K S  PPP T I+ +PVYK +  +++ V+RC NH  G D  EG   P  H IR   NN   + +   +GR  + +PY  PQVG E+ T L +FMC +SC     ++R I +I  LE  +GQVL R+  E R+CACPGRDR  +E            +   G  +K   + S  A      G K+R+    +GDE+   ++     +++IL +++E LE
Sbjct:  115 IPSNTDYPGPHHFEVTF--QQSSTAKSATWTYSPLLKKLYCQIAKTCPIQIKVSTPPPPGTAIRAMPVYKKAEHVTDVVKRCPNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSVVVPYEPPQVGTEFTTILYNFMCNSSCV-GGMNRRPILIIITLEMRDGQVLGRRSFEGRICACPGRDRKADEDHYREQQALNESSAKNGAASKRAFKQSPPAVPALGAGVKKRR----HGDEDTYYLQVRGRENFEILMKLKESLE 376
The following BLAST results are available for this feature:
BLAST of TCONS_00068052-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P738.297e-4236.80Tumor protein p73 OS=Homo sapiens GN=TP73 PE=1 SV=... [more]
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