TCONS_00067978-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00067978-protein
Unique Name	TCONS_00067978-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	409

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00067978-protein ID=TCONS_00067978-protein|Name=TCONS_00067978-protein|organism=Clytia hemisphaerica|type=polypeptide|length=409bp
PGVRKQNRSKERKMIRGQEVSDTNDNKSASAMFQNNKANNDRNTKASTSS
NSSTTSTPQTPEAIAKEKLAIYVYEYLQHQGATRAAQTFLSEIQWEKNIA
LGDSPGFLTNWWCVFWDLYSAAPERQEPNNHTHEAKAFHDLNSGTLPSPN
YIPQPPGDMNNMTGMPGYYARPPMGGNNMNMLGAFMGGNRYNAGRTPNIR
IPNQMGMGGQLPFSNMDPSRQQQVAGGNYQNMQANSMTSGMRPFNNGMGP
VPPNYNRLPSMSNGSMMGGNPMGGPSMQMAPRGPWNNPPPPSPLTPGPTR
TPILSSPQGDPTTNINNNSATPVSMSPVSLDMQNFGMKPPDQNPQMNISG
TPGGIIKTETNETLEDLPTSVGTGGADAEIQRIKESMKEEVKKFEVTENS
HVPEYYNMH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_042455	XLOC_042455	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00067978	TCONS_00067978	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008116	SSDP_DNA-bd
IPR006594	LisH

Vocabulary: **Molecular Function**
Term	Definition
GO:0003697	single-stranded DNA binding
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003697	single-stranded DNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008116	Sequence-specific single-strand DNA-binding protein	PRINTS	PR01743	SSDNABINDING	coord: 112..125 score: 91.67 coord: 78..93 score: 69.1 coord: 94..111 score: 66.67 coord: 126..141 score: 52.08 coord: 57..76 score: 50.28
IPR006594	LIS1 homology motif	SMART	SM00667	Lish	coord: 65..97 e-value: 4.9E-4 score: 29.4
IPR006594	LIS1 homology motif	PROSITE	PS50896	LISH	coord: 65..97 score: 9.658
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 261..351

Blast

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BLAST of TCONS_00067978-protein vs. Swiss-Prot (Human)
Match: SSBP3 (Single-stranded DNA-binding protein 3 OS=Homo sapiens GN=SSBP3 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.453e-43
Identity = 104/228 (45.61%), Postives = 128/228 (56.14%), Query Frame = 0

Query:   65 AKEKLAIYVYEYLQHQGATRAAQTFLSEIQWEKNIALGDSPGFLTNWWCVFWDLYSAAPERQEPNNHTHEAKAFHDLNSGTLPSPNYIPQPPGDMNN--------MTGMPGY----YARPPMGGNNMNMLG----AFMGGNRYNAGRTPNIRIPNQ--MGMGGQLPF--SNMDPSRQQQVA--GGNYQNMQ-----------ANSMTSGMRPFNNGMGPVPPNYNRLP 259
            A+EKLA+YVYEYL H GA ++AQTFLSEI+WEKNI LG+ PGFL +WWCVFWDLY AAPER++   H+ EAKAFHD ++   PSP     PP D             G PG     +A+PP   N  +M+G     FM   RY  G  P IR+ NQ   G+ G  P   ++MDP+RQQ     GG+ Q M              +  SGMRP  N +GP  P  N  P
Sbjct:   16 AREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPP-HNPSSMMGPHSQPFM-SPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGP 241

The following BLAST results are available for this feature:

BLAST of TCONS_00067978-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00067978-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SSBP3	3.453e-43	45.61	Single-stranded DNA-binding protein 3 OS=Homo sapi...	[more]

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TCONS_00067978-protein (polypeptide) - C. hemisphaerica