TCONS_00067678-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00067678-protein
Unique NameTCONS_00067678-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length216

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00067678-protein ID=TCONS_00067678-protein|Name=TCONS_00067678-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MASKDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFAT
RSIQVGGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHITYE
NVERWLKELRDHADANIVIMLVGNKSDLRHLRAVPTEEAKAFAERNELSF
IETSALDSTNVEVAFRNILEEIYHIVSQKQIRDANSSSGPQPNEYTQTIQ
VAPTESDTKKQVKCCQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042254XLOC_042254Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00067678TCONS_00067678Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 150..172
score: 41.8
coord: 12..33
score: 55.2
coord: 53..75
score: 52.89
coord: 35..51
score: 36.7
coord: 115..128
score: 55.25
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 14..171
e-value: 4.2E-12
score: 35.3
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 17..212
e-value: 5.7E-6
score: 35.2
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 9..175
e-value: 8.1E-25
score: 98.5
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 12..175
e-value: 2.3E-112
score: 389.3
NoneNo IPR availableGENE3D3.30.70.1390coord: 11..75
e-value: 6.3E-29
score: 99.3
NoneNo IPR availableGENE3D3.40.50.300coord: 76..173
e-value: 1.5E-36
score: 124.0
NoneNo IPR availablePROSITEPS51419RABcoord: 7..215
score: 36.387
NoneNo IPR availableCDDcd01868Rab11_likecoord: 9..173
e-value: 1.76799E-134
score: 376.515
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 13..173
e-value: 4.8E-62
score: 208.2
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 10..168
e-value: 1.8E-44
score: 149.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 7..193

Blast
[Close]
BLAST of TCONS_00067678-protein vs. Swiss-Prot (Human)
Match: RB11A (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 357.066 bits (915), Expect = 4.831e-127
Identity = 175/216 (81.02%), Postives = 190/216 (87.96%), Query Frame = 0 
Query:    1 MASKDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVGGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHITYENVERWLKELRDHADANIVIMLVGNKSDLRHLRAVPTEEAKAFAERNELSFIETSALDSTNVEVAFRNILEEIYHIVSQKQIRDANSSSGPQPNEYTQTIQVAPTESDTKKQVKCCQ 216
            M ++DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKH+TYENVERWLKELRDHAD+NIVIMLVGNKSDLRHLRAVPT+EA+AFAE+N LSFIETSALDSTNVE AF+ IL EIY IVSQKQ+ D   +    P+     I V PT ++ K +V+CCQ
Sbjct:    1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDM-SPSNNVVPIHVPPT-TENKPKVQCCQ 214
The following BLAST results are available for this feature:
BLAST of TCONS_00067678-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RB11A4.831e-12781.02Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
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