TCONS_00067375-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00067375-protein
Unique Name	TCONS_00067375-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	633

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00067375-protein ID=TCONS_00067375-protein|Name=TCONS_00067375-protein|organism=Clytia hemisphaerica|type=polypeptide|length=633bp
MSDFSGGRNFHHHNSDNRMHNNYRKDLYQEHYGYSFKQNRIMTVETMKTL
DLLADREHEKSHREVIIYDSGSPVLKVETGTTLKVLKLLYGAEHERKRQI
LGVRPKNIGEGGIPCIVTLDDSKLFEISYDILISEDGKEKKETTGEDGNT
TNRCIDCSRESWKTKRFTNVGMNTELSLNPGVEVDMSKLNNNSNQQSPNS
QAANHDKGAFPPNNGPTVTQHSPSAINPRGGSFLQPKEMHGKPPSRTNGN
HHEEAERPPHERPGVTSPTYGVEIYSNHRSSQIRYPSLEPPAHYERFVQP
HGWMIERGGRYDPTRPHHENPTLASRRSPGHRSRSPISPRAGEYHPHSHY
HAFHEKYRPVLLPTNYMHGSRRRESRHTPAEEKTEPTYIKKENAKEQIQP
LTHASEQNDKMGRANLQPGDEPPVFVLPNDYDVVSGIDPRIASMQDKRSG
KFSPLSPSHEKEDEKPLKASNIENGEKDLKEEFQNSPSESTGSYSPKGSN
GVASGSPDSPPTNSSQKLYCKICSGVFPTKSLLYKHLRGHTSDEKPFKCN
ECGQGFTLSSNLRQHRIIHRGYKPFQCEFCGKKFMRSNVYKQHRRIHTGE
EMHKCGLCPSEFLQKYALLKHMKKNHDIDAVDA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_042093	XLOC_042093	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00067375	TCONS_00067375	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013087	Znf_C2H2_type

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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POSITION

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013087	Zinc finger C2H2-type	SMART	SM00355	c2h2final6	coord: 603..626 e-value: 0.054 score: 22.6 coord: 575..597 e-value: 0.0049 score: 26.1 coord: 518..540 e-value: 0.19 score: 20.8 coord: 547..569 e-value: 0.011 score: 25.0
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 520..540
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 549..569
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 605..626
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 577..597
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 575..602 score: 14.461
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 518..545 score: 10.388
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 603..626 score: 8.538
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 547..574 score: 15.147
IPR013087	Zinc finger C2H2-type	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 569..621
IPR013087	Zinc finger C2H2-type	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 526..584
None	No IPR available	GENE3D	3.30.160.60		coord: 568..587 e-value: 2.4E-14 score: 52.6
None	No IPR available	GENE3D	3.30.160.60		coord: 553..567 e-value: 2.4E-13 score: 49.4
None	No IPR available	PFAM	PF00096	zf-C2H2	coord: 547..569 e-value: 6.4E-4 score: 19.9 coord: 519..540 e-value: 0.0026 score: 18.0
None	No IPR available	GENE3D	2.30.30.380		coord: 531..552 e-value: 3.8E-9 score: 36.1
None	No IPR available	GENE3D	3.30.160.60		coord: 459..530 e-value: 0.015 score: 14.8
None	No IPR available	GENE3D	3.30.160.60		coord: 588..631 e-value: 1.5E-14 score: 53.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..271
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 308..346
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 369..513

Blast

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BLAST of TCONS_00067375-protein vs. Swiss-Prot (Human)
Match: ZSC31 (Zinc finger and SCAN domain-containing protein 31 OS=Homo sapiens GN=ZSCAN31 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.851e-23
Identity = 46/104 (44.23%), Postives = 68/104 (65.38%), Query Frame = 0

Query:  520 CKICSGVFPTKSLLYKHLRGHTSDEKPFKCNECGQGFTLSSNLRQHRIIHRGYKPFQCEFCGKKFMRSNVYKQHRRIHTGEEMHKCGLCPSEFLQKYALLKHMK 623
            C+ C   F  +S L +H R HT  EKP++C ECG+ F+ S+ L +HR IH G KP++C+ CGK F+ S+   QH+RIHTGE+ ++C  C   F+Q   L +H++
Sbjct:  269 CEECGKAFSRRSSLNEHRRSHTG-EKPYQCKECGKAFSASNGLTRHRRIHTGEKPYECKVCGKAFLLSSCLVQHQRIHTGEKRYQCRECGKAFIQNAGLFQHLR 371

HSP 2 Score: 96.2857 bits (238), Expect = 2.712e-21
Identity = 47/104 (45.19%), Postives = 65/104 (62.50%), Query Frame = 0

Query:  520 CKICSGVFPTKSLLYKHLRGHTSDEKPFKCNECGQGFTLSSNLRQHRIIHRGYKPFQCEFCGKKFMRSNVYKQHRRIHTGEEMHKCGLCPSEFLQKYALLKHMK 623
            C  C   F   S+L +H R HT  EKP++C ECG+ F+  S+L +HR  H G KP+QC+ CGK F  SN   +HRRIHTGE+ ++C +C   FL    L++H +
Sbjct:  241 CNECGKSFTKSSVLIEHQRIHTG-EKPYECEECGKAFSRRSSLNEHRRSHTGEKPYQCKECGKAFSASNGLTRHRRIHTGEKPYECKVCGKAFLLSSCLVQHQR 343

HSP 3 Score: 89.3521 bits (220), Expect = 4.858e-19
Identity = 46/104 (44.23%), Postives = 62/104 (59.62%), Query Frame = 0

Query:  520 CKICSGVFPTKSLLYKHLRGHTSDEKPFKCNECGQGFTLSSNLRQHRIIHRGYKPFQCEFCGKKFMRSNVYKQHRRIHTGEEMHKCGLCPSEFLQKYALLKHMK 623
            CK C   F   + L +H R HT  EKP++C  CG+ F LSS L QH+ IH G K +QC  CGK F+++    QH R+HTGE+ ++C  C   F ++  L KH K
Sbjct:  297 CKECGKAFSASNGLTRHRRIHTG-EKPYECKVCGKAFLLSSCLVQHQRIHTGEKRYQCRECGKAFIQNAGLFQHLRVHTGEKPYQCSQCSKLFSKRTLLKKHQK 399

The following BLAST results are available for this feature:

BLAST of TCONS_00067375-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00067375-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
ZSC31	1.851e-23	44.23	Zinc finger and SCAN domain-containing protein 31 ...	[more]

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TCONS_00067375-protein (polypeptide) - C. hemisphaerica

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