TCONS_00067350-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00067350-protein
Unique NameTCONS_00067350-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1629

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00067350-protein ID=TCONS_00067350-protein|Name=TCONS_00067350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1629bp
MRLLILLSFVLNYVWTQDFANNDEYQFGRAIKCKRDDGIGQRCMPVFENV
AYNRIVVANNTCGTYGKPEEYCVQTGVSGATKICETCYEKVPGQNHPADL
MTDIKIDGNPTWWQSQTLLDNRYGVHLILDFKKKYNIAFIRIRFHTIRPH
SFAIHKKSTYSPSERWLPYQFYSRTCNDTYGLPNKGIVTLANQNIALCTD
RYSGMIPLSGGNVAYLTLDHRPGKNNFDRYPSLQEWVTVTQLKISLDQLN
TFGDEVFGDPKVLKSYYFAISDIAVGGRCKCNGHASTCARNQNTARYYCE
CDHNTAGVDCEKCLPLYNDRPWRRASGRFANPCKKCDCNGLADTCVFDEQ
LWIDSNYRSGGRCVNCQKNTDGVNCERCKQYHYRKTSSESCTPCNCNQDG
SRSASCNNDGRCSCKPGVTGDKCDRCISGYYGFSSTGCQQCYCDKEGSLS
NTCDATGQCKCKENVMGKRCDQCKPNHFDLDTTNPKGCKACFCNGHGVSC
THAQGIQSKLISSTFDTDLNGWRLEDQYGNDYTNLLRRQQGTQHITSEAV
GSKTLYMVAPSRYLGDKLSSYAKNFAFTYGIYREPEDPEIVTSREDIIFE
GAGMTATYEITSQNNERPKGRFVKFNYKLVEPSGMTTFNFQKLLSDLTAI
KIRTTFLKNRRFAIDDVNMESTQYVSLNSLDQVTWKEKCQCQVGYAGEQC
EKCQPGFTRENVGSGPLGRCVPCECNNHGTRCDPETGICECQDNTSGRNC
ELCKKGYYGNPTRGTKGDCQPCPCIFANECILIGQSVKCTDCPEGHIGDN
CEKCADGYFGDPEGKLGTPTKCQRCDCNGNVDPNAIGNCDGLTGACLKCI
YNTTNGDEEKCEECADGFYGDALAEPKGNCTACKCFEPGTKKPAGHVAGE
AISCDKNGKCECLDNVKGDHCDQCPAGHWNVQSGNGCEKCNCHPDGSIGE
DCDIETGQCKCRPGVAGRTCNQCAPGHFEFSADGCKACNCHPDGSVHQNC
TSDGVCVCKPGVLGIKCDQCPENNYNLSVGCIACPKCFDLVQLAVNKLRQ
RLSTMNLTKGNFTNEEVGIDVRDENFENAIRALDKAIDELKKKTNSLLDG
DKQLFEFFDGLRKQFEKINERFGELKSMVEQSKEASEKGEVEVTRAEEII
EEIKKLLQDAEDKIAQESAKLFDKNDDSAVDLSDLAKEMREIAKEARKLA
TKHEKEAGEIQSTTDMALNQSTNAYNTAKMARDMEEKINKELKENVVDVD
EAMKLAEESRKLINDSVAESNAAIADGKKLIDEAMEELPDFKAKEMKESA
DEKTKSASDVSEKSDQLLKENKEAIEQLKKDDEEARRLMKEGRELKADSN
DLYAKAKNASDEAMQAQEDGKRVANEAKEMLKTLMEFEETIAKSKANATE
AMKLIPLIKKLIKEANEVANVADKKVSGAEGDAEESHNTASNAHNVTMAA
KNDIDDLIAQAKKLLNETMSFMMNEVVETQNNIKETDKKLDEYKEIAIED
GKKVDKASDDSKMAAEVASKANNDLTKSLEDVDNLIETIENLDEINLAEL
EEAERRFAAAQDQIDGAISFEINSLQNKLKSQNATITEYELDLDPLRAQV
EFVHQLYQYLPKTCFRSPEGLEGNQNAKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042085XLOC_042085Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00067350TCONS_00067350Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008211Laminin_N
IPR002049Laminin_EGF
IPR000742EGF-like_dom
IPR000034Laminin_IV
IPR001368TNFR/NGFR_Cys_rich_reg
IPR008979Galactose-bd-like
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
ZOOM
x 1
POSITION
0
2004006008001000120014001600Score = Score = 42.653SequenceCoilCoilCoilCoilCoilCoilCoilCoilCoilPR00011G3DSA:2.10.25.10G3DSA:2.10.25.10G3DSA:1.10.287.620G3DSA:2.10.25.10G3DSA:1.20.120.570mobidb-litecd00055cd00055cd00055cd00055cd00055cd00055cd00055cd00055SSF57196SSF57196SSF57196SSF57196SSF57196SSF57196SSF57196SSF58104SSF57196SM00136PF00055PS51117SM00180PF00053PS01248PS01248PS01248PS01248PS01248PS50027PS50027PS50027PS50027PS50027PS50027PS50027PS50027PS50027PS50027SM00181SM00281PF00052PS51115SM00208G3DSA:2.60.120.260PS00022
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1239..1259
NoneNo IPR availableCOILSCoilCoilcoord: 1447..1467
NoneNo IPR availableCOILSCoilCoilcoord: 1476..1496
NoneNo IPR availableCOILSCoilCoilcoord: 1307..1397
NoneNo IPR availableCOILSCoilCoilcoord: 1572..1592
NoneNo IPR availableCOILSCoilCoilcoord: 1182..1206
NoneNo IPR availableCOILSCoilCoilcoord: 1143..1177
NoneNo IPR availableCOILSCoilCoilcoord: 1073..1096
NoneNo IPR availableCOILSCoilCoilcoord: 1522..1542
NoneNo IPR availablePRINTSPR00011EGFLAMININcoord: 999..1017
score: 42.34
coord: 952..970
score: 56.94
coord: 971..999
score: 27.27
coord: 732..750
score: 47.37
NoneNo IPR availableGENE3D2.10.25.10coord: 723..772
e-value: 8.1E-14
score: 51.2
coord: 441..491
e-value: 7.5E-9
score: 35.3
NoneNo IPR availableGENE3D2.10.25.10coord: 939..986
e-value: 1.1E-9
score: 38.0
coord: 882..938
e-value: 1.0E-6
score: 28.5
coord: 394..440
e-value: 5.6E-10
score: 38.9
coord: 987..1037
e-value: 5.6E-5
score: 22.9
coord: 825..881
e-value: 2.9E-7
score: 30.2
NoneNo IPR availableGENE3D1.10.287.620coord: 1472..1608
e-value: 0.051
score: 12.5
NoneNo IPR availableGENE3D2.10.25.10coord: 492..722
e-value: 5.4E-14
score: 51.7
coord: 776..824
e-value: 3.8E-8
score: 33.0
coord: 279..336
e-value: 2.5E-9
score: 36.8
coord: 337..393
e-value: 1.5E-8
score: 34.2
NoneNo IPR availableGENE3D1.20.120.570coord: 1073..1234
e-value: 5.2E-5
score: 22.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1292..1316
NoneNo IPR availableCDDcd00055EGF_Lamcoord: 987..1034
e-value: 1.67502E-8
score: 51.9714
NoneNo IPR availableCDDcd00055EGF_Lamcoord: 722..770
e-value: 2.01613E-13
score: 66.609
NoneNo IPR availableCDDcd00055EGF_Lamcoord: 278..324
e-value: 1.94412E-5
score: 43.1118
NoneNo IPR availableCDDcd00055EGF_Lamcoord: 824..874
e-value: 7.70944E-5
score: 41.1858
NoneNo IPR availableCDDcd00055EGF_Lamcoord: 903..938
e-value: 1.35089E-5
score: 43.497
NoneNo IPR availableCDDcd00055EGF_Lamcoord: 441..489
e-value: 1.31224E-11
score: 61.2162
NoneNo IPR availableCDDcd00055EGF_Lamcoord: 940..986
e-value: 7.66914E-14
score: 67.7646
NoneNo IPR availableCDDcd00055EGF_Lamcoord: 393..439
e-value: 2.61372E-12
score: 63.1422
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 441..488
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 723..774
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 778..827
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 279..338
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 394..443
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 336..396
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 825..875
NoneNo IPR availableSUPERFAMILY58104Methyl-accepting chemotaxis protein (MCP) signaling domaincoord: 1075..1318
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 940..981
IPR008211Laminin, N-terminalSMARTSM00136LamNT_2coord: 37..277
e-value: 1.1E-73
score: 260.8
IPR008211Laminin, N-terminalPFAMPF00055Laminin_Ncoord: 43..277
e-value: 3.6E-65
score: 219.7
IPR008211Laminin, N-terminalPROSITEPS51117LAMININ_NTERcoord: 39..278
score: 42.653
IPR002049Laminin EGF domainSMARTSM00180lamegf_3coord: 940..985
e-value: 1.1E-14
score: 64.7
coord: 441..488
e-value: 1.8E-12
score: 57.4
coord: 988..1031
e-value: 1.5E-7
score: 41.1
coord: 825..880
e-value: 4.6E-5
score: 32.8
coord: 883..937
e-value: 3.6E-8
score: 43.1
coord: 394..438
e-value: 2.1E-11
score: 53.9
coord: 723..769
e-value: 2.9E-11
score: 53.4
coord: 336..391
e-value: 1.8E-8
score: 44.1
coord: 772..822
e-value: 1.2E-4
score: 31.4
coord: 677..720
e-value: 2.9
score: 5.8
coord: 279..333
e-value: 0.0019
score: 27.4
IPR002049Laminin EGF domainPFAMPF00053Laminin_EGFcoord: 825..880
e-value: 7.2E-5
score: 22.7
coord: 988..1028
e-value: 1.2E-5
score: 25.3
coord: 687..711
e-value: 2.2E-4
score: 21.2
coord: 883..937
e-value: 7.3E-6
score: 25.9
coord: 279..323
e-value: 2.3E-5
score: 24.3
coord: 940..985
e-value: 4.1E-11
score: 42.7
coord: 336..391
e-value: 4.6E-6
score: 26.6
coord: 441..488
e-value: 5.7E-12
score: 45.5
coord: 723..769
e-value: 1.1E-10
score: 41.4
coord: 778..822
e-value: 0.0029
score: 17.6
IPR002049Laminin EGF domainPROSITEPS01248EGF_LAM_1coord: 459..493
IPR002049Laminin EGF domainPROSITEPS01248EGF_LAM_1coord: 739..774
IPR002049Laminin EGF domainPROSITEPS01248EGF_LAM_1coord: 959..990
IPR002049Laminin EGF domainPROSITEPS01248EGF_LAM_1coord: 412..443
IPR002049Laminin EGF domainPROSITEPS01248EGF_LAM_1coord: 1006..1037
IPR002049Laminin EGF domainPROSITEPS50027EGF_LAM_2coord: 825..882
score: 10.426
IPR002049Laminin EGF domainPROSITEPS50027EGF_LAM_2coord: 988..1033
score: 13.321
IPR002049Laminin EGF domainPROSITEPS50027EGF_LAM_2coord: 336..393
score: 11.512
IPR002049Laminin EGF domainPROSITEPS50027EGF_LAM_2coord: 394..440
score: 21.223
IPR002049Laminin EGF domainPROSITEPS50027EGF_LAM_2coord: 441..490
score: 19.928
IPR002049Laminin EGF domainPROSITEPS50027EGF_LAM_2coord: 772..824
score: 9.322
IPR002049Laminin EGF domainPROSITEPS50027EGF_LAM_2coord: 723..771
score: 19.604
IPR002049Laminin EGF domainPROSITEPS50027EGF_LAM_2coord: 279..335
score: 9.036
IPR002049Laminin EGF domainPROSITEPS50027EGF_LAM_2coord: 940..987
score: 22.327
IPR002049Laminin EGF domainPROSITEPS50027EGF_LAM_2coord: 883..939
score: 12.94
IPR000742EGF-like domainSMARTSM00181egf_5coord: 984..1018
e-value: 97.0
score: 4.7
coord: 719..751
e-value: 69.0
score: 6.4
coord: 838..881
e-value: 43.0
score: 8.8
coord: 390..424
e-value: 72.0
score: 6.2
coord: 332..376
e-value: 180.0
score: 1.5
coord: 768..802
e-value: 3.6
score: 16.6
IPR000034Laminin IVSMARTSM00281LamB_3acoord: 551..674
e-value: 1.9E-9
score: 47.4
IPR000034Laminin IVPFAMPF00052Laminin_Bcoord: 556..673
e-value: 1.8E-17
score: 63.5
IPR000034Laminin IVPROSITEPS51115LAMININ_IVAcoord: 517..688
score: 19.382
IPR001368TNFR/NGFR cysteine-rich regionSMARTSM00208TNFR_3coord: 378..412
e-value: 21.0
score: 7.4
coord: 973..1006
e-value: 1.6
score: 17.7
IPR008979Galactose-binding domain-likeGENE3D2.60.120.260coord: 47..275
e-value: 3.0E-9
score: 36.6
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 299..310

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067350-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
MRLLILLSFVLNYVWTQDFANNDEYQFGRAIKCKRDDGIGQRCMPVFENVAYNRIVVANNTCGTYGKPEEYCVQTGVSGATKICETCYEKVPGQNHPADLMTDIKIDGNPTWWQSQTLLDNRYGVHLILDFKKKYNIAFIRIRFHTIRPHSFAIHKKSTYSPSERWLPYQFYSRTCNDTYGLPNKGIVTLANQNIALCTDRYSGMIPLSGGNVAYLTLDHRPGKNNFDRYPSLQEWVTVTQLKISLDQLNTFGDEVFGDPKVLKSYYFAISDIAVGGRCKCNGHASTCARNQNTARYYCECDHNTAGVDCEKCLPLYNDRPWRRASGRFANPCKKCDCNGLADTCVFDEQLWIDSNYRSGGRCVNCQKNTDGVNCERCKQYHYRKTSSESCTPCNCNQDGSRSASCNNDGRCSCKPGVTGDKCDRCISGYYGFSSTGCQQCYCDKEGSLSNTCDATGQCKCKENVMGKRCDQCKPNHFDLDTTNPKGCKACFCNGHGVSCTHAQGIQSKLISSTFDTDLNGWRLEDQYGNDYTNLLRRQQGTQHITSEAVGSKTLYMVAPSRYLGDKLSSYAKNFAFTYGIYREPEDPEIVTSREDIIFEGAGMTATYEITSQNNERPKGRFVKFNYKLVEPSGMTTFNFQKLLSDLTAIKIRTTFLKNRRFAIDDVNMESTQYVSLNSLDQVTWKEKCQCQVGYAGEQCEKCQPGFTRENVGSGPLGRCVPCECNNHGTRCDPETGICECQDNTSGRNCELCKKGYYGNPTRGTKGDCQPCPCIFANECILIGQSVKCTDCPEGHIGDNCEKCADGYFGDPEGKLGTPTKCQRCDCNGNVDPNAIGNCDGLTGACLKCIYNTTNGDEEKCEECADGFYGDALAEPKGNCTACKCFEPGTKKPAGHVAGEAISCDKNGKCECLDNVKGDHCDQCPAGHWNVQSGNGCEKCNCHPDGSIGEDCDIETGQCKCRPGVAGRTCNQCAPGHFEFSADGCKACNCHPDGSVHQNCTSDGVCVCKPGVLGIKCDQCPENNYNLSVGCIACPKCFDLVQLAVNKLRQRLSTMNLTKGNFTNEEVGIDVRDENFENAIRALDKAIDELKKKTNSLLDGDKQLFEFFDGLRKQFEKINERFGELKSMVEQSKEASEKGEVEVTRAEEIIEEIKKLLQDAEDKIAQESAKLFDKNDDSAVDLSDLAKEMREIAKEARKLATKHEKEAGEIQSTTDMALNQSTNAYNTAKMARDMEEKINKELKENVVDVDEAMKLAEESRKLINDSVAESNAAIADGKKLIDEAMEELPDFKAKEMKESADEKTKSASDVSEKSDQLLKENKEAIEQLKKDDEEARRLMKEGRELKADSNDLYAKAKNASDEAMQAQEDGKRVANEAKEMLKTLMEFEETIAKSKANATEAMKLIPLIKKLIKEANEVANVADKKVSGAEGDAEESHNTASNAHNVTMAAKNDIDDLIAQAKKLLNETMSFMMNEVVETQNNIKETDKKLDEYKEIAIEDGKKVDKASDDSKMAAEVASKANNDLTKSLEDVDNLIETIENLDEINLAELEEAERRFAAAQDQIDGAISFEINSLQNKLKSQNATITEYELDLDPLRAQVEFVHQLYQYLPKTCFRSPEGLEGNQNAKK2004006008001000120014001600Expect = 0.00e+0 / Id = 38.88SequenceLAMC1
Match NameE-valueIdentityDescription
LAMC10.000e+038.88Laminin subunit gamma-1 OS=Homo sapiens GN=LAMC1 P... [more]
back to top