TCONS_00066866-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00066866-protein
Unique Name	TCONS_00066866-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	722

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00066866-protein ID=TCONS_00066866-protein|Name=TCONS_00066866-protein|organism=Clytia hemisphaerica|type=polypeptide|length=722bp
MDETRLTYNDSYTTDKDEPFTDEEFIQSKRQKAYQHLGHFNSGSPGSADV
WANHHQQPNTTGFNYHHHISTAGSRPLSSGSGLPLITPSLVPVSLHQVAP
RTDDTETLITPRDHDPATTSPDPAPTSSYQVTVVPPLLHSYSSFSMIDPT
SRTNSRCPKMEWKTHAQDPLYAPSIPTYNETSGPKFDIPEDITIRNLVQL
YLTDDLLDELVQNTNKYAARTKESEGNKPSSRTKQWRPVTRSEILQHIAL
GVLMGMRSLPGISDYWSKDPLFHNPVFGAVMSRNRYQLISKFVHFADENG
PVTESTKTTKLHKILAVLNHLNQRFKDTYNPTKVLNIGEFALTSERSRCK
EPGFEHSGSLKFVSLHDETGYVLNTSIHEGKRQFDPLTETMTKVEPEQIT
LQLVGPFLNKGHQLYVNDVTVSLARNLIANNTGICGEIAPKHIQTTFVDN
FTEQDLNKGETTHLTNNKMLALRYNHHKEKDKFYLSTVHAPELSAATTKR
DRNGNWVSRQKLVLDYNKNSVLADKQYQSIQQSSMVRNSHKWTTKVAYHL
FEIAFVNAHVLYSSQPKKSPVSYLDFKLSFVRQVLSDCPRFLTIMENPTA
PNPSKSGETQHFLMTVPTKNPKYPFPSKRCQLCHKKGKRRESRYQCDSCI
GNPGFCVDPCFKEHHQQRQKQHEQQQHKQQQQQQQQQQQQQQQQQHQQNN
DIKTLAPVFAKEPLEKNSILEE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041817	XLOC_041817	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00066866	TCONS_00066866	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR029526	PGBD
IPR032718	PGBD4_C_Znf-ribbon

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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POSITION

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 662..699
None	No IPR available	GENE3D	1.20.1000.10		coord: 203..706 e-value: 3.6E-8 score: 32.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 667..722
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..128
IPR029526	PiggyBac transposable element-derived protein	PFAM	PF13843	DDE_Tnp_1_7	coord: 199..559 e-value: 3.1E-53 score: 181.2
IPR032718	PiggyBac transposable element-derived protein 4, C-terminal zinc-ribbon	PFAM	PF13842	Tnp_zf-ribbon_2	coord: 628..660 e-value: 1.1E-5 score: 26.0

Blast

[Close]

BLAST of TCONS_00066866-protein vs. Swiss-Prot (Human)
Match: PGBD4 (PiggyBac transposable element-derived protein 4 OS=Homo sapiens GN=PGBD4 PE=2 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 8.647e-40
Identity = 133/529 (25.14%), Postives = 239/529 (45.18%), Query Frame = 0

Query:  160 MEWKTHAQDPLYAPSIPTYNETSGPKFDIPEDITIRNLVQLYLTDDLLDELVQNTNKYAAR-TKESEGNKPSSRTKQWRPVTRSEILQHIALGVLMGMRSLPGISDYWSKDPLFHNPVFGAVMSRNRYQLISKFVHFADENG-PVTESTKTTKLHKILAVLNHLNQRFKDTYNPTKVLNIGEFALTSERSRCKE---PGFEHSGSLK-FVSLHDETGYVLNTSIHEGKRQFDPLTETMTKVEPEQITLQLVGPFLNKGHQLYVNDVTVS--LARNLIANNTGICGEIAPKHIQTTFVDNFTEQDLNKGETTHLTNNKMLALRYNHHKEKDKFYLSTVHAPELSAATTKRDRNGNWVSRQKLVLDYNKNSVLADKQYQSIQQSSMVRNSHK-WTTKVAYHLFEIAFVNAHVLYSSQPKKSPVSYLDFKLSFVRQVLSD--CPRFLTIMENPTAPNPSK---SGETQHFLMTVPTKNPKYPFPSKRCQLC----HKKGK--RRESRYQCDSCIGNPGFCVDPCFKEHHQQR 668
            M+W   A  P        +  T G K D+ +        +L+ T++L+ ++ + TN  AA    +  G K  SR  +W+     E+    A+ +L G+   P +  +WS  PL   P    +M+  R+ L+ + +HF + +     +S     L KI  V + L  +F   Y P + + + E  +  +     +   P       LK +V    ++GYV N  +H G      L ++   ++  +I L LV   L +G+ +++++  +S  L R L  N T   G       Q   + N  ++ + KG T      +++AL++   KE     LST H   +       +RNG    R ++++DYN+N    D   Q +      R  HK W  K  +HL  I  +N+++L+     +  +S+++F+L+ + ++L     P    +   P + + +    SG  +HF  ++P  + K   P+ RC++C     K GK  R+E+RY C  C  +   CV PCF+ +H ++
Sbjct:   73 MKWSARAMIPRQRYD---FTGTPGRKVDVSDITDPLQYFELFFTEELVSKITRETNAQAALLASKPPGPKGFSRMDKWKDTDNDELKVFFAVMLLQGIVQKPELEMFWSTRPLLDTPYLRQIMTGERFLLLFRCLHFVNNSSISAGQSKAQISLQKIKPVFDFLVNKFSTVYTPNRNIAVDESLMLFKGPLAMKQYLPTKRVRFGLKLYVLCESQSGYVWNALVHTGPGM--NLKDSADGLKSSRIVLTLVNDLLGQGYCVFLDNFNISPMLFRELHQNRTDAVGTARLNRKQ---IPNDLKKRIAKGTTVARFCGELMALKWCDGKEVT--MLSTFHNDTVIEVN---NRNGKKTKRPRVIVDYNENMGAVDSADQMLTSYPSERKRHKVWYKKFFHHLLHITVLNSYILFKKDNPEHTMSHINFRLALIERMLEKHHKPGQQHLRGRPCSDDVTPLRLSG--RHFPKSIPATSGKQN-PTGRCKICCSQYDKDGKKIRKETRYFCAEC--DVPLCVVPCFEIYHTKK 583

The following BLAST results are available for this feature:

BLAST of TCONS_00066866-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00066866-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
PGBD4	8.647e-40	25.14	PiggyBac transposable element-derived protein 4 OS...	[more]

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TCONS_00066866-protein (polypeptide) - C. hemisphaerica

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