Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00066788-protein ID=TCONS_00066788-protein|Name=TCONS_00066788-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term Definition
GO:0005525 GTP binding GO:0003924 GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003924 GTPase activity
molecular_function
GO:0005525 GTP binding
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
20 40 60 80 100 120 140 160 180 200 Score = 44.6 Score = 33.87 Score = 50.69 Score = 53.31 Score = 40.42 Expect = 9.3E-37 / Score = 138.1 Expect = 9.8E-13 / Score = 43.1 Expect = 3.9E-5 / Score = 23.9 Expect = 8.2E-77 / Score = 271.2 Expect = 1.6E-35 / Score = 120.7 Expect = 6.2E-28 / Score = 96.1 Score = Score = 30.648 Expect = 5.21893E-92 / Score = 267.951 Expect = 8.6E-30 / Score = 101.6 Expect = 1.5E-57 / Score = 193.7 Score = Sequence PR00449 SM00173 SM00174 SM00176 SM00175 G3DSA:3.40.50.300 G3DSA:3.30.70.1390 mobidb-lite PS51419 cd01861 TIGR00231 PF00071 SSF52540
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available PRINTS PR00449 RASTRNSFRMNG coord: 11..32 None No IPR available SMART SM00173 ras_sub_4 coord: 8..173 None No IPR available SMART SM00174 rho_sub_3 coord: 13..172 None No IPR available SMART SM00176 ran_sub_2 coord: 16..200 None No IPR available SMART SM00175 rab_sub_5 coord: 11..173 None No IPR available GENE3D 3.40.50.300 coord: 75..170 None No IPR available GENE3D 3.30.70.1390 coord: 9..74 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 179..203 None No IPR available PROSITE PS51419 RAB coord: 5..203 None No IPR available CDD cd01861 Rab6 coord: 11..170 IPR005225 Small GTP-binding protein domain TIGRFAM TIGR00231 TIGR00231 coord: 9..166 IPR001806 Small GTPase superfamily PFAM PF00071 Ras coord: 12..169 IPR027417 P-loop containing nucleoside triphosphate hydrolase SUPERFAMILY 52540 P-loop containing nucleoside triphosphate hydrolases coord: 7..181
Blast
BLAST of TCONS_00066788-protein vs. Swiss-Prot (Human)
Match:
RAB6A (Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3)
HSP 1 Score: 229.95 bits (585), Expect = 4.053e-77
Identity = 114/198 (57.58%), Postives = 151/198 (76.26%), Query Frame = 0
Query: 9 KKYKLVFLGDQSVGKTSLITRFMYDSFDSTYQATIGIDFLSKKLSVDGKEVALQIWDTAGTERFRSLIPNYIRDLSAAVAAYDITSMSSFDSVRSWINDIRQEK-ENVLIVLCGNKSDLAEKRRVSYEQGMRLAEELGTMYMETSAKTGTNVKKLFRTIAVALHEGVENSMPQEPKNHIVIGSPSPEHN--TGEGCYC 203
+K+KLVFLG+QSVGKTSLITRFMYDSFD+TYQATIGIDFLSK + ++ + V LQ+WDTAG ERFRSLIP+YIRD + AV YDIT+++SF WI+D+R E+ +V+I+L GNK+DLA+KR+VS E+G R A+EL M++ETSAK G NVK+LFR +A AL G+E++ + ++ I I P+ + GC C
Sbjct: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP-GMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC 208
The following BLAST results are available for this feature:
BLAST of TCONS_00066788-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
M N T T Q P S A K K Y K L V F L G D Q S V G K T S L I T R F M Y D S F D S T Y Q A T I G I D F L S K K L S V D G K E V A L Q I W D T A G T E R F R S L I P N Y I R D L S A A V A A Y D I T S M S S F D S V R S W I N D I R Q E K E N V L I V L C G N K S D L A E K R R V S Y E Q G M R L A E E L G T M Y M E T S A K T G T N V K K L F R T I A V A L H E G V E N S M P Q E P K N H I V I G S P S P E H N T G E G C Y C 20 40 60 80 100 120 140 160 180 200 Expect = 4.05e-77 / Id = 57.58 Sequence RAB6A
Match Name E-value Identity Description
RAB6A 4.053e-77 57.58 Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6... [more]
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