TCONS_00065616-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00065616-protein
Unique Name	TCONS_00065616-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	981

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00065616-protein ID=TCONS_00065616-protein|Name=TCONS_00065616-protein|organism=Clytia hemisphaerica|type=polypeptide|length=981bp
RGASVVVNDLGGNFKGQGKSANLADKVVKEIQDEGGQAVANYDSVEEGEK
IIDTAIQNYGKVDIVINNAGILRDRSFLNMKDEDWDKVFQVHVKGAFKVT
KAAWPHMRKQRYGRIIMTTSPAGLYGNFGQSNYSAAKMALLGLCNTLSIE
GKGRNIFVNTIAPLAMTRMTLDVFPEGTDLQPQHICPFVIYLCHEDCQET
GSLVEAAGGFACKTRLQRSQGMQLRQFVADNPTVESVAENWSRLSDFSVS
TPVDDNQAGAAHIMEQIRDIPASPLPANATALERMQAHRIPDLHFAYTSG
DVIRYALSIGAGLPDDLPFIYEGHSDFCVIPTFASVMGQDSVFKDIVGVP
GFDQIDLSRAVHGEQYIELMKPIPSSGEFTTRTRVVDCLDKRKFTQVIIE
SEVMDSNNDVVCKNQFVVLFLGSGGIGRRGKSDVQVSALPPPRRAPDAVC
EEKTGTNQAAYYRLNGDPNPLHIDQDIASMVGFKEPILHGLCTYGYGLRH
ILKTYVKHDVSLFKSIKGQFSKPVIPGQTLVTEMWCEGSRVHFQVKVKEN
GNVVIKGGYVDFHKDVTPVAASPSTSASPPPPAQPNSTGASNLKSDQFFT
ELKSVLSSAPDLAKSMNAAYLFQITVDKKIEAEYLLDFKQSPPVVSNQGG
KGDVTIKVSDDDFVKLADGKLNPMQAFMQGKIKVSGQIALAQKLDTVFKT
AKSKVAAGDSIKVKPVSMTATSSTATSLKSETLFNDLKAALSSDPGLVKT
VKGTFCFQITEKGKSVGSYHLDFNSTPPEITSNEKTKADVTIKVSDDNLI
LLADGKLNPMQAFMQGKIKVSGQIALAQKLDTVFKAGKKQMEAASKAAPT
TATAPTTTLGGDSTLKAHALFSTVKSKIAEMKDTTSAFSTIKGAFLFKVT
RAQKLAGEFLLNFNQSPPVIGLGPGPADVTLTIEDDDLELLATGKLNPMH
AFMNQKLKAKGKVMLAQKLNKVFDMYKPSKL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041106	XLOC_041106	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00065616	TCONS_00065616	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002347	SDR_fam
IPR003033	SCP2_sterol-bd_dom
IPR002539	MaoC_dom
IPR020904	Sc_DH/Rdtase_CS
IPR016040	NAD(P)-bd_dom
IPR029069	HotDog_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016491	oxidoreductase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00081	GDHRDH	coord: 60..71 score: 57.66 coord: 107..123 score: 33.8 coord: 154..171 score: 27.02 coord: 133..152 score: 33.48 coord: 175..195 score: 20.59
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00080	SDRFAMILY	coord: 133..152 score: 31.73 coord: 60..71 score: 55.36
IPR002347	Short-chain dehydrogenase/reductase SDR	PFAM	PF00106	adh_short	coord: 19..166 e-value: 9.9E-35 score: 119.7
None	No IPR available	GENE3D	3.10.129.10		coord: 291..438 e-value: 4.0E-33 score: 113.8
None	No IPR available	PFAM	PF13452	MaoC_dehydrat_N	coord: 298..413 e-value: 3.3E-8 score: 33.6
None	No IPR available	GENE3D	3.10.129.10		coord: 439..565 e-value: 2.1E-24 score: 85.2
None	No IPR available	GENE3D	3.40.50.720		coord: 1..263 e-value: 3.2E-43 score: 147.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 570..591
None	No IPR available	CDD	cd03448	HDE_HSD	coord: 442..563 e-value: 8.30017E-58 score: 193.975
None	No IPR available	CDD	cd05353	hydroxyacyl-CoA-like_DH_SDR_c-like	coord: 1..221 e-value: 3.23615E-123 score: 376.662
IPR003033	SCP2 sterol-binding domain	GENE3D	3.30.1050.10		coord: 860..973 e-value: 5.6E-21 score: 74.4
IPR003033	SCP2 sterol-binding domain	PFAM	PF02036	SCP2	coord: 601..699 e-value: 2.3E-19 score: 69.6 coord: 734..835 e-value: 2.2E-20 score: 72.9 coord: 883..974 e-value: 6.7E-14 score: 52.1
IPR003033	SCP2 sterol-binding domain	GENE3D	3.30.1050.10		coord: 720..837 e-value: 8.1E-33 score: 112.8 coord: 585..701 e-value: 1.9E-31 score: 108.3
IPR003033	SCP2 sterol-binding domain	SUPERFAMILY	55718	SCP-like	coord: 591..701
IPR003033	SCP2 sterol-binding domain	SUPERFAMILY	55718	SCP-like	coord: 725..836
IPR003033	SCP2 sterol-binding domain	SUPERFAMILY	55718	SCP-like	coord: 865..976
IPR002539	MaoC-like domain	PFAM	PF01575	MaoC_dehydratas	coord: 442..555 e-value: 6.1E-27 score: 93.5
IPR020904	Short-chain dehydrogenase/reductase, conserved site	PROSITE	PS00061	ADH_SHORT	coord: 120..148
IPR016040	NAD(P)-binding domain	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 1..216
IPR029069	HotDog domain	SUPERFAMILY	54637	Thioesterase/thiol ester dehydrase-isomerase	coord: 441..557
IPR029069	HotDog domain	SUPERFAMILY	54637	Thioesterase/thiol ester dehydrase-isomerase	coord: 287..432

Blast

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BLAST of TCONS_00065616-protein vs. Swiss-Prot (Human)
Match: DHB4 (Peroxisomal multifunctional enzyme type 2 OS=Homo sapiens GN=HSD17B4 PE=1 SV=3)

HSP 1 Score: 636.721 bits (1641), Expect = 0.000e+0
Identity = 329/718 (45.82%), Postives = 456/718 (63.51%), Query Frame = 0

Query:    1 RGASVVVNDLGGNFKGQGKSANLADKVVKEIQDEGGQAVANYDSVEEGEKIIDTAIQNYGKVDIVINNAGILRDRSFLNMKDEDWDKVFQVHVKGAFKVTKAAWPHMRKQRYGRIIMTTSPAGLYGNFGQSNYSAAKMALLGLCNTLSIEGKGRNIFVNTIAPLAMTRMTLDVFPEG--TDLQPQHICPFVIYLCHEDCQETGSLVEAAGGFACKTRLQRSQGMQLRQFVADNP-TVESVAENWSRLSDFSVSTPVDDNQAGAAHIMEQIRDIPA-SPLPANATALERMQA---------HRIPDLHFAYTSGDVIRYALSIGAGL--PDDLPFIYEGHSDFCVIPTFASVMGQDSVF-KDIVGVPGFDQIDLSRAVHGEQYIELMKPIPSSGEFTTRTRVVDCLDKRKFTQVIIESEVMDSNNDVVCKNQFVVLFLGSGGIGRRGKSDVQVSALPPPRRAPDAVCEEKTGTNQAAYYRLNGDPNPLHIDQDIASMVGFKEPILHGLCTYGYGLRHILKTYVKHDVSLFKSIKGQFSKPVIPGQTLVTEMWCEGSRVHFQVKVKENGNVVIKGGYVDFHKDVTPVAASPSTSASPPPPAQPNSTGASNLKSDQFFTELKSVLSS-APDLAKSMNAAYLFQITVDKKIEAEYLLDFKQSPPVVSNQGGKG--DVTIKVSDDDFVKLADGKLNPMQAFMQGKIKVSGQIALAQKLDTVFK 699
            RGA VVVNDLGG+FKG GK +  ADKVV+EI+  GG+AVANYDSVEEGEK++ TA+  +G++D+V+NNAGILRDRSF  + DEDWD + +VH++G+F+VT+AAW HM+KQ+YGRIIMT+S +G+YGNFGQ+NYSAAK+ LLGL N+L+IEG+  NI  NTIAP A +RMT  V PE     L+P+++ P V++LCHE C+E G L E   G+  K R +R+ G  +RQ   ++P T E+V  NW ++ DF  ++     Q     I+E +  I +   + AN T+     A          ++P   +AYT  + I YAL +GA +  P DL FIYEG SDF  +PTF  ++GQ S+    +  +PG   I+ ++ +HGEQY+EL KP+P +G+      V D LDK     VII      S  +++C NQF +  +GSGG G +  SD    A+  P R PDAV  + T  NQAA YRL+GD NPLHID + AS+ GF +PILHGLCT+G+  R +L+ +  +DVS FK+IK +F+KPV PGQTL TEMW EG+R+HFQ KV+E G++VI   YVD          +P++  S   P++        L+S   F E+   L    P++ K +NA + + IT    I A++ +D K     V     KG  D TI +SD+DF+++  GKL+P +AF  G++K  G I L+QKL  + K
Sbjct:   32 RGALVVVNDLGGDFKGVGKGSLAADKVVEEIRRRGGKAVANYDSVEEGEKVVKTALDAFGRIDVVVNNAGILRDRSFARISDEDWDIIHRVHLRGSFQVTRAAWEHMKKQKYGRIIMTSSASGIYGNFGQANYSAAKLGLLGLANSLAIEGRKSNIHCNTIAPNAGSRMTQTVMPEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKLRWERTLGAIVRQ--KNHPMTPEAVKANWKKICDFENASKPQSIQESTGSIIEVLSKIDSEGGVSANHTSRATSTATSGFAGAIGQKLPPFSYAYTELEAIMYALGVGASIKDPKDLKFIYEGSSDFSCLPTFGVIIGQKSMMGGGLAEIPGL-SINFAKVLHGEQYLELYKPLPRAGKLKCEAVVADVLDKGSGV-VIIMDVYSYSEKELICHNQFSLFLVGSGGFGGKRTSDKVKVAVAIPNRPPDAVLTDTTSLNQAALYRLSGDWNPLHIDPNFASLAGFDKPILHGLCTFGFSARRVLQQFADNDVSRFKAIKARFAKPVYPGQTLQTEMWKEGNRIHFQTKVQETGDIVISNAYVDL---------APTSGTSAKTPSE-----GGKLQSTFVFEEIGRRLKDIGPEVVKKVNAVFEWHITKGGNIGAKWTIDLKSGSGKVYQGPAKGAADTTIILSDEDFMEVVLGKLDPQKAFFSGRLKARGNIMLSQKLQMILK 731

The following BLAST results are available for this feature:

BLAST of TCONS_00065616-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00065616-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DHB4	0.000e+0	45.82	Peroxisomal multifunctional enzyme type 2 OS=Homo ...	[more]

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TCONS_00065616-protein (polypeptide) - C. hemisphaerica