TCONS_00064824-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00064824-protein
Unique Name	TCONS_00064824-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	983

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00064824-protein ID=TCONS_00064824-protein|Name=TCONS_00064824-protein|organism=Clytia hemisphaerica|type=polypeptide|length=983bp
MKRSFSQAESSSSGSATITVPPQTSSTSQINTIPPLKLRIKQQSIVQELT
VSLYESSNVKETLQFLLHFHHQLRLVDSTSEECEQVIRHLKDLIRKESDH
LVRAKAIELIKEICYLPSSNKMQCVEEIFDCLHKESNHFVLSQIFNSLSR
AAILIPNKADIIQKILKASIKKLDDSHHDVRCACLNLIGQLCPSEPIRMS
STRTVDPMELFSEFSADQDPRVRTVVYQSLLTLHQRNRPLDISVYEKATS
ALTDDYENVRLAAIKLVWVFSHTTPNSMMKTESGEEIRLLDDAFIKICNM
SNDISMKVRAKAVGLLGSLHDVSLHLLQQTLDKKLMSHGKKTKSFNQRQL
ERFRGGGSSGGGGAWATGTKWASDDPSILKKEIKEDEVKLMNSGSCGVFV
KSLEDEFMEVRTAGVDSLCELANQNPSFARMSTDFLVDMFNDEIESVRLN
SVNSLMKLHKYVDLREDQLDTILECLNDFNQVVRNAVRDLLAQCQMATQS
CLYATVLALLTNLKKYANDRESIWRCMKSLGERHPYFVSSLVPQIFITHP
FYAIPEPNIDDPAHIAVSALVFNATVHSPPILSLLPPFAKQHYDYLRESL
PEFIPALSKDDSSSSGSNSKDGEEESLENRFFQNTIQRLYNVLEKPSNRS
MSEINSCLSDLNGLKKLHRSIRPSAEFLALFFKSYQMLRKCQNERTWNLP
PALTASTECSSLQNDVENLLEMSYNMEYSFPGITSKSTCVLRMIRILAHS
LHILLHLRALPKAQQTQKNNFKLWKIFFKRLNNFKEHLTTSSSDAHAYQS
VIELQNSLEQNLSDITTLLQLVQNFFVKQTITLDMNNRLRQCSATILEPR
NNVDNPFRFSAGLVLAVDFVSFIHNIDDVANVYIKITYPDSQIVYQKPKN
TEFHWENRSRQKLLCKLLLSHQSWTEPCFIKVCVVLIHPTDIKRELYHKQ
SDNQVQRNDELYKSFLKISDEVKIYVQPKPVTR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040664	XLOC_040664	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00064824	TCONS_00064824	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 3..338 e-value: 3.8E-20 score: 71.2
None	No IPR available	GENE3D	1.25.10.20		coord: 381..520 e-value: 1.2E-12 score: 47.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 607..627
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 74..338 coord: 384..699

Blast

[Close]

BLAST of TCONS_00064824-protein vs. Swiss-Prot (Human)
Match: INT4 (Integrator complex subunit 4 OS=Homo sapiens GN=INTS4 PE=1 SV=2)

HSP 1 Score: 520.776 bits (1340), Expect = 1.515e-169
Identity = 323/971 (33.26%), Postives = 525/971 (54.07%), Query Frame = 0

Query:   37 KLRIKQQSIVQELTVSLYESSNVKETLQFLLHFHHQLRLVDSTSEECEQVIRHLKDLIRKESDHLVRAKAIELIKEICYLPSSNKMQCVEEIFDCLHKESNHFVLSQIFNSLSRAAILIPNKADIIQKILKASIKKLDDSHHDVRCACLNLIGQLCPSEPIRMSSTRTV---DPMELFSEFSADQDPRVRTVVYQSLLTLHQRNRPLDISVYEKATSALTDDYENVRLAAIKLVWVFSHTTPNSMMKT-ESGEEIRLLDDAFIKICNMSNDISMKVRAKAVGLLGSLHDVSLHLLQQTLDKKLMSHGKKTKSFNQRQLERFRGGGSSGGGGAWATGTKWASDDPSILKKEIKEDEVKLMNSGSCGVFVKSLEDEFMEVRTAGVDSLCELANQNPSFARMSTDFLVDMFNDEIESVRLNSVNSLMKLHKYVDLREDQLDTILECLNDFNQVVRNAVRDLLAQCQMATQSCLYATVLALLTNLKKYANDRESIWRCMKSLGERHPYFVSSLVPQIFITHPFYAIPEPNIDDPAHIAVSALVFNATVHSPPILSLLPPFAKQHYDYLRESLPEFIPAL---SKDDSSSSGSNSKDGEEESLENRFFQNTIQRLYNVLEKPSNRSMSEINSCLSDLNGLKKLHRSIRPSAEFLALFFKSYQMLRKCQNERTWNL--PPALTASTECSSLQNDVENLLEMSYNMEYSFPGITSKSTCVLRMIRILAHSLHILLHLRALPKAQQTQKNNFKLWKIFFKRLNNFKEHLTTSSSDAHAYQSVIELQNSLEQNLSDI---------TTLLQLVQNFFVKQT-ITLDMNNRLRQCSATILEPRNNVDNPFRFSAGLVLAVDFVSFIHNIDDVAN-VYIKITYPDSQIVYQKPKNTEFHWENRSRQKLLCKLLLSHQSWTEPCFIKVCVVLIHPTDIKRE----LYHKQSDNQVQRNDELYKSFLKISDEVKIYVQPKPVTR 983
            KLR+ + S    L + L ++++  + LQ+LL F  +       +E  E V+R L +   KE+D  VR K   L+  +      +    +++  + L  E +H VL+Q+ ++L      +P    I  +++  + K L D+ H VR  CL L+G L   E         +   D  ++  ++ +DQDPRVRT   +++L LH+R   L  ++Y +A   L+DDYE VR AA++L+WV S   P S++    S EEIRL+DDAF KIC+M +D S  VR +A  LLGS+  VS H L+QTLDKKLMS  ++ ++ ++R  E +         G +++G KW  D P   K+E+    V L+ SG+CG FV  LEDE  EVR A V++LC LA  +PSFA    DFLVDMFNDEIE VRL S++++ K+   + LREDQLDT+L  L D ++ +R A+ +LL    ++T+  ++  ++ LL NL KY  DR+SIW+C+K LG RHP  V  LVP++  THPF+   EP++DDPA+IAV  L+FNA    P + +L      +HY YLR+SL   +PAL    +   SS+ S S   +E+    +F Q +++R+Y++       +   +   + DL  L +L   +   A+F A + +   +L K   E+ WN+  P  L  S   S+     + ++E +Y ME+ + G+ +K   ++  +R+ A +L +++  R      +     F + + F + ++ F+ +             +  LQ+S    L D+           +++++Q    +   + L +  ++ + SATI+EP    DNP RF++GLV+A+D  + + ++ D  N V +++ YPD Q     PK  +F      R +L+ ++ LSH +WTE C ++V ++L + +  +      +   +   QV+ + E     +  S  VK+Y+ PKP  R
Sbjct:   27 KLRLTKPSKSAALHIDLCKATSPADALQYLLQFARK----PVEAESVEGVVRILLEHYYKENDPSVRLKIASLLGLLSKTAGFSPDCIMDDAINILQNEKSHQVLAQLLDTLLAIGTKLPENQAIQMRLVDVACKHLTDTSHGVRNKCLQLLGNLGSLEKSVTKDAEGLAARDVQKIIGDYFSDQDPRVRTAAIKAMLQLHERGLKLHQTIYNQACKLLSDDYEQVRSAAVQLIWVVSQLYPESIVPIPSSNEEIRLVDDAFGKICHMVSDGSWVVRVQAAKLLGSMEQVSSHFLEQTLDKKLMSDLRRKRTAHERAKELY-------SSGEFSSGRKWGDDAP---KEEVDTGAVNLIESGACGAFVHGLEDEMYEVRIAAVEALCMLAQSSPSFAEKCLDFLVDMFNDEIEEVRLQSIHTMRKISNNITLREDQLDTVLAVLEDSSRDIREALHELLCCTNVSTKEGIHLALVELLKNLTKYPTDRDSIWKCLKFLGSRHPTLVLPLVPELLSTHPFFDTAEPDMDDPAYIAVLVLIFNAAKTCPTMPALFSDHTFRHYAYLRDSLSHLVPALRLPGRKLVSSAVSPSIIPQEDP-SQQFLQQSLERVYSLQHLDPQGAQELLEFTIRDLQRLGELQSELAGVADFSATYLRCQLLLIKALQEKLWNVAAPLYLKQSDLASAA---AKQIMEETYKMEFMYSGVENKQVVIIHHMRLQAKALQLIVTAR----TTRGLDPLFGMCEKFLQEVDFFQRYFIA---------DLPHLQDSFVDKLLDLMPRLMTSKPAEVVKILQTMLRQSAFLHLPLPEQIHKASATIIEPAGESDNPLRFTSGLVVALDVDATLEHVQDPQNTVKVQVLYPDGQAQMIHPKPADFRNPGPGRHRLITQVYLSHTAWTEACQVEVRLLLAYNSSARIPKCPWMEGGEMSPQVETSIE---GTIPFSKPVKVYIMPKPARR 963

The following BLAST results are available for this feature:

BLAST of TCONS_00064824-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00064824-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
INT4	1.515e-169	33.26	Integrator complex subunit 4 OS=Homo sapiens GN=IN...	[more]

You are here

TCONS_00064824-protein (polypeptide) - C. hemisphaerica