TCONS_00064714-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064714-protein
Unique NameTCONS_00064714-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length559

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064714-protein ID=TCONS_00064714-protein|Name=TCONS_00064714-protein|organism=Clytia hemisphaerica|type=polypeptide|length=559bp
MDLLDFSDEIIEQIFLTQRISHQDLGNICQACKRLNEIASSNELWKVKLY
NRWPTQWVSIPKESFRDVYKERSANDAMIMIELRKIMRGSFHLRSIPHKL
MKEISRVSVSERSFIIDGLLAIINNADLKYLRMDLVYYARKVYDYVRCQK
ATSNLMNCVTRDGFHDLFEGIKFLAIGLEVDYLDNIHQIEDLKNMFDEKV
LGTKEYEYPSMSTQEDIKRILWMFNDFLLKDGTFAQKAFLLMSDTDRKFS
SSALKCCFYITLARKLGLDVNAVRIDDTSARKSQFFTSIKPSIGDTIYIE
FRSGMLKMVDEQSNLLARLKATENATKKDIFVCLLHDVIEFYKHGGQISG
RQIQKIQWLIETLLQLSPTEDESRLFLTRIYLHQNSNIDETLEHLTYLIS
HGNLPSEPIHQLLTVTKRLEEEKKNEEKTQPKLRSSTEDNQKVVYKIGMI
MRHRRLGYMCVIYGWDNFCDMPYNWQRQMGVLDMLNGPNQPFYNVMVNDG
SNRYAAQESLMMHANPGEIAHEEIGKYFCSIINSCYYKPTEMLNEMYPED
CDWFGCPDV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040595XLOC_040595Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064714TCONS_00064714Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011722Hemimethylated_DNA-bd_dom
IPR001810F-box_dom
IPR007110Ig-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 409..429
NoneNo IPR availableGENE3D1.20.1280.50coord: 3..443
e-value: 2.4E-9
score: 37.0
IPR011722Hemimethylated DNA-binding domainSMARTSM00992YccV_like_2_acoord: 442..540
e-value: 3.5E-19
score: 79.7
IPR011722Hemimethylated DNA-binding domainTIGRFAMTIGR02097TIGR02097coord: 443..533
e-value: 4.3E-19
score: 66.7
IPR011722Hemimethylated DNA-binding domainGENE3D2.30.30.390coord: 444..541
e-value: 5.5E-25
score: 86.9
IPR011722Hemimethylated DNA-binding domainPFAMPF08755YccV-likecoord: 444..530
e-value: 2.5E-22
score: 79.1
IPR011722Hemimethylated DNA-binding domainSUPERFAMILY141255YccV-likecoord: 443..531
IPR001810F-box domainPFAMPF12937F-box-likecoord: 8..46
e-value: 1.6E-5
score: 24.6
IPR001810F-box domainSUPERFAMILY81383F-box domaincoord: 3..72
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 431..534
score: 6.705

Blast
[Close]
BLAST of TCONS_00064714-protein vs. Swiss-Prot (Human)
Match: FBX21 (F-box only protein 21 OS=Homo sapiens GN=FBXO21 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.462e-44
Identity = 173/607 (28.50%), Postives = 267/607 (43.99%), Query Frame = 0 
Query:    3 LLDFSDEIIEQIFLTQRISHQDLGNICQACKRLNEIA-SSNELWKVKLYNRWPT---QWVSIPKESFRDVYKERSANDAMIMIELRKIMRGSFHLR----SIPHKLMKEISRVSVSERSFIIDGLLAIINNADLKYLRMDLVYYARKVYDYVRCQKATSNLMNCVTR-DGFHDLFEGIKFLAIGLEVDYLDNIHQIEDLKNMFDE------KVLGTKEYEYPSMSTQ----------EDIKRILWMFNDFLLKDGTFAQKAF------------LLMSDTDRKFSSSALKCCFYITLARKLGLDVNAVRIDDTSA-RKSQFFTSIKPSIGDTIYIE-FRSGMLKMVDEQSNLL-----ARLKATENATKKDIFVCLLHDVIEFYKHGGQISGRQIQKIQWLIETLLQLSPTEDESRLFLTRIYLHQNS----------NIDETLEHLTYL--ISHGNLPSEPIHQLLTVTKRLEEEKKNEEKTQPKLRSSTEDNQKVVYKIGMIMRHRRLGYMCVIYGWDNFCDMPYNWQRQMGVLDMLNGPNQPFYNVMVNDGSNRYAAQESLMMHANPGEIAHEEIGKYFCSIINSCYYKPTEMLNEMYPEDCDW 553
            L++   E++E I     ++  D+G +   C+RL E+  SS ++WK +   RWP+    +      ++ + YK R        +E RKI+  SF  R     +P     +I  +   E  F  D L+ I+N    K L     YYA+K+  Y+R QK  +NL   + + D +    EG  +  I    + L +I  ++D++   D       K L      +PS++ +          E   ++L   N  L     F                 +L+  T    S S L    Y+T+AR+LG+ +  V        R  Q        I D IYI+ F  G    V E   L+     A L    N  K  +   ++ +++   K  G     Q+ +    ++  L + P + +  L   R+Y H              + + L+H+  L    HG +     H L  +     E KK E   + KLRS  E ++ V Y IG+IM+H+R GY CVIYGWD  C M + W R M V  + +G +QPFYNV+V DGS RYAAQE+L  +  P EI+H ++G+YF S     +Y P   L   YPED ++
Sbjct:   30 LVNLPGEVLEYILCCGSLTAADIGRVSSTCRRLRELCQSSGKVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAG----LEARKIV-ASFSKRFFSEHVPCNGFSDIENLEGPE-IFFEDELVCILNMEGRKALTWK--YYAKKILYYLRQQKILNNLKAFLQQPDDYESYLEGAVY--IDQYCNPLSDI-SLKDIQAQIDSIVELVCKTLRGINSRHPSLAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGIPISMSLL----YLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTVKECEYLIGQHVTAALYGVVNVKK--VLQRMVGNLLSLGKREGIDQSYQLLRDS--LDLYLAMYPDQVQLLLLQARLYFHLGIWPEKSFCLVLKVLDILQHIQTLDPGQHGAVGYLVQHTLEHI-----ERKKEEVGVEVKLRSD-EKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYF-SEFTGTHYIPNAELEIRYPEDLEF 610
The following BLAST results are available for this feature:
BLAST of TCONS_00064714-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBX211.462e-4428.50F-box only protein 21 OS=Homo sapiens GN=FBXO21 PE... [more]
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